Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007516.2 Cucumis melo HOM05D004524 ORTHO05D005477 0.0e+00 6010.6 3037 100.0
CsaV3_6G042750 Cucumis sativus L. HOM05D004524 ORTHO05D005477 0.0e+00 5325.0 3156 87.0
Sed0025355 Sechium edule HOM05D004524 ORTHO05D005477 0.0e+00 4253.4 3183 71.0
ClCG01G016470 Citrullus lanatus HOM05D004524 ORTHO05D005477 0.0e+00 3511.1 2543 74.0
CiPaw.01G027900 Carya illinoinensis HOM05D004524 ORTHO05D005477 0.0e+00 2562.7 3220 47.2
Prupe.7G144700 Prunus persica HOM05D004524 ORTHO05D005477 0.0e+00 2561.2 3219 46.4
Atru.chr3.464 Acer truncatum HOM05D004524 ORTHO05D005477 0.0e+00 2545.8 3232 46.9
Cfa004228 Carpinus fangiana HOM05D004524 ORTHO05D005477 0.0e+00 2537.7 3224 46.6
Ciclev10024678m.g Citrus clementina HOM05D004524 ORTHO05D005477 0.0e+00 2445.6 3220 45.0
MD02G1159300 Malus domestica HOM05D004524 ORTHO05D005477 0.0e+00 2431.4 3206 45.1
RcHm_v2.0_Chr2g0103341 Rosa chinensis HOM05D004524 ORTHO05D005477 0.0e+00 2431.0 3258 44.8
TAR628G0958 Trochodendron aralioides HOM05D004524 ORTHO05D005477 0.0e+00 2400.5 3280 44.8
Manes.13G131650 Manihot esculenta HOM05D004524 ORTHO05D005477 0.0e+00 2391.7 3227 44.6
CANSAT01G1357 Cannabis sativa HOM05D004524 ORTHO05D005477 0.0e+00 2369.3 3227 44.4
FAN19G0876 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 2358.6 3254 44.0
QL06p044160 Quercus lobata HOM05D004524 ORTHO05D005477 0.0e+00 2353.2 3881 39.6
FAN23G1697 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 2341.2 3256 43.7
Duzib187G1201 Durio zibethinus HOM05D004524 ORTHO05D005477 0.0e+00 2339.3 3222 44.3
Potri.007G034900 Populus trichocarpa HOM05D004524 ORTHO05D005477 0.0e+00 2325.8 3221 44.1
Gorai.007G208400 Gossypium raimondii HOM05D004524 ORTHO05D005477 0.0e+00 2325.1 3202 44.0
TWI53G1766 Tripterygium wilfordii HOM05D004524 ORTHO05D005477 0.0e+00 2317.3 3220 44.2
FvH4_1g14580 Fragaria vesca HOM05D004524 ORTHO05D005477 0.0e+00 2313.1 3258 43.4
Sabra07G0030300 Salix brachista HOM05D004524 ORTHO05D005477 0.0e+00 2294.2 3346 42.4
Lalb_Chr05g0226951 Lupinus albus HOM05D004524 ORTHO05D005477 0.0e+00 2277.3 3217 42.8
Glyma.16G144200 Glycine max HOM05D004524 ORTHO05D005477 0.0e+00 2240.3 3234 42.7
Lj4g0019712 Lotus japonicus HOM05D004524 ORTHO05D005477 0.0e+00 2230.3 3215 42.8
Gohir.A11G188400 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 2213.7 3191 43.0
Nn5g29420 Nelumbo nucifera HOM05D004524 ORTHO05D005477 0.0e+00 2185.2 3254 41.7
Ca_22222_v3 Cicer arietinum L. HOM05D004524 ORTHO05D005477 0.0e+00 2184.1 3221 42.0
Medtr8g078970 Medicago truncatula HOM05D004524 ORTHO05D005477 0.0e+00 2183.3 3222 42.0
Thecc.01G046200 Theobroma cacao HOM05D004524 ORTHO05D005477 0.0e+00 2175.2 2667 47.5
Gohir.D11G194900 Gossypium hirsutum HOM05D004524 ORTHO05D005477 0.0e+00 2172.5 2914 45.0
PGR102G0585 Punica granatum HOM05D004524 ORTHO05D005477 0.0e+00 2165.6 3214 41.7
FAN26G3430 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 2162.5 3295 41.4
Rhsim08G0108900 Rhododendron simsii HOM05D004524 ORTHO05D005477 0.0e+00 2154.8 3485 40.5
arahy.Tifrunner.gnm1.ann1.7NUW0V Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 2147.1 3207 42.1
Dinv26770 Davidia involucrata HOM05D004524 ORTHO05D005477 0.0e+00 2133.6 2976 43.8
THA.LOC104827123 Tarenaya hassleriana HOM05D004524 ORTHO05D005477 0.0e+00 2118.2 3221 40.9
PSO170G3447 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 2094.7 3232 40.3
Aqoxy5G01755 Aquilegia oxysepala HOM05D004524 ORTHO05D005477 0.0e+00 2061.2 3237 40.6
TPR.G11249 Trifolium pratense HOM05D004524 ORTHO05D005477 0.0e+00 2059.6 3021 42.3
AL5G30510 Arabidopsis lyrata HOM05D004524 ORTHO05D005477 0.0e+00 2033.8 3212 39.5
Cc07_g05430 Coffea canephora HOM05D004524 ORTHO05D005477 0.0e+00 2018.4 3253 39.4
PSO700G0043 Papaver somniferum HOM05D004524 ORTHO05D005477 0.0e+00 2016.9 3219 39.4
Carub.0005s1670 Capsella rubella HOM05D004524 ORTHO05D005477 0.0e+00 2016.1 3211 39.9
Thhalv10027614m.g Eutrema salsugineum HOM05D004524 ORTHO05D005477 0.0e+00 2006.5 3222 40.0
Sc16g0001530 Simmondsia chinensis HOM05D004524 ORTHO05D005477 0.0e+00 2000.7 3220 39.8
A01p24160 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 1987.6 3218 39.6
BraA01t02328Z Brassica rapa HOM05D004524 ORTHO05D005477 0.0e+00 1987.6 3218 39.6
AUR62003242 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 1976.8 3238 39.3
Phvul.003G249100 Phaseolus vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 1975.7 3045 41.0
GSVIVG01005092001 Vitis vinifera HOM05D004524 ORTHO05D005477 0.0e+00 1975.7 2102 52.5
BolC1t02927H Brassica oleracea HOM05D004524 ORTHO05D005477 0.0e+00 1969.5 3199 39.3
BcaB05g23215 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 1957.2 3218 39.0
Hund14111 Selenicereus undatus HOM05D004524 ORTHO05D005477 0.0e+00 1957.2 3241 39.0
BcaC09g50025 Brassica carinata HOM05D004524 ORTHO05D005477 0.0e+00 1949.9 3213 38.9
EL10Ac6g14835 Beta vulgaris HOM05D004524 ORTHO05D005477 0.0e+00 1943.7 3277 38.7
Migut.H00497 Erythranthe guttata HOM05D004524 ORTHO05D005477 0.0e+00 1939.5 3234 39.1
Aa31LG4G18620 Aethionema arabicum HOM05D004524 ORTHO05D005477 0.0e+00 1938.3 3260 38.6
arahy.Tifrunner.gnm1.ann1.S59764 Arachis hypogaea HOM05D004524 ORTHO05D005477 0.0e+00 1924.4 2349 48.0
Psat0s4220g0040 Pisum sativum HOM05D004524 ORTHO05D005477 0.0e+00 1922.1 2301 48.3
Sopen02g034830 Solanum pennellii HOM05D004524 ORTHO05D005477 0.0e+00 1921.4 3252 38.4
MSTRG.23802 Avicennia marina HOM05D004524 ORTHO05D005477 0.0e+00 1905.2 3257 38.7
SalBow1G7798 Salvia bowleyana HOM05D004524 ORTHO05D005477 0.0e+00 1877.4 3256 37.7
HanXRQChr12g0378491 Helianthus annuus HOM05D004524 ORTHO05D005477 0.0e+00 1850.1 3191 38.6
C01p29870 Brassica napus HOM05D004524 ORTHO05D005477 0.0e+00 1844.7 2886 40.2
Lsat_1_v5_gn_3_94181 Lactuca sativa HOM05D004524 ORTHO05D005477 0.0e+00 1837.0 3173 38.7
SGA_v2.0_scaffold15G07211 Striga asiatica HOM05D004524 ORTHO05D005477 0.0e+00 1808.5 3280 37.3
Ah.02g126100 Amaranthus hybridus HOM05D004524 ORTHO05D005477 0.0e+00 1806.2 2898 40.0
AT3G50380 Arabidopsis thaliana HOM05D004524 ORTHO05D005477 0.0e+00 1804.3 2483 43.0
ECA246G4564 Erigeron canadensis HOM05D004524 ORTHO05D005477 0.0e+00 1793.9 3146 38.3
ATR0733G201 Amborella trichopoda HOM05D004524 ORTHO05D005477 0.0e+00 1701.4 3309 36.6
Sp5g11790 Schrenkiella parvula HOM05D004524 ORTHO05D005477 0.0e+00 1644.8 2907 37.5
Peaxi162Scf00535g00735 Petunia axillaris HOM05D004524 ORTHO05D005477 0.0e+00 1564.7 1723 50.9
Haze_15172 Corylus avellana HOM05D004524 ORTHO05D005477 0.0e+00 1537.3 1275 64.0
Solyc02g090130.4 Solanum lycopersicum HOM05D004524 ORTHO05D005477 0.0e+00 1534.2 1779 48.9
Zm00001eb030660 Zea mays HOM05D004524 ORTHO05D005477 0.0e+00 1516.9 3275 33.4
DCAR_025673 Daucus carota HOM05D004524 ORTHO05D005477 0.0e+00 1501.5 2823 35.1
Eucgr.H01945 Eucalyptus grandis HOM05D004524 ORTHO05D005477 0.0e+00 1442.9 1443 52.9
CDE01G0297 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 0.0e+00 1417.5 1679 47.8
vmacro17888 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 0.0e+00 1375.1 1381 54.7
VMungo0251G2856 Vigna mungo HOM05D004524 ORTHO05D005477 0.0e+00 1368.6 1362 54.8
CAN.G836.23 Capsicum annuum HOM05D004524 ORTHO05D005477 0.0e+00 1314.3 1328 54.4
HPP92_018815 Vanilla planifolia HOM05D004524 ORTHO05D005477 0.0e+00 1296.6 1739 44.0
Nitab4.5_0000108g0200 Nicotiana tabacum HOM05D004524 ORTHO05D005477 0.0e+00 1290.8 1591 47.8
FAN28G0821 Fragaria x ananassa HOM05D004524 ORTHO05D005477 0.0e+00 1276.5 1215 57.9
CARHR159880 Cardamine hirsuta HOM05D004524 ORTHO05D005477 0.0e+00 1222.6 1335 50.6
AUR62027230 Chenopodium quinoa HOM05D004524 ORTHO05D005477 0.0e+00 1154.8 1210 52.4
unitig_62.g23407 Utricularia gibba HOM05D004524 ORTHO05D005477 0.0e+00 1090.5 3133 30.1
Mapoly0053s0053 Marchantia polymorpha HOM05D004524 ORTHO05D005477 4.2e-311 1072.8 2030 35.4
Pp3c8_13080 Physcomitrium patens HOM05D004524 ORTHO05D005477 2.3e-300 1037.3 2020 34.9
AagrBONN_evm.TU.Sc2ySwM_344.2829 Anthoceros agrestis HOM05D004524 ORTHO05D005477 1.9e-283 981.1 1879 35.6
MBI16_g31331_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 4.3e-267 926.8 2554 31.0
Lj7A15G49 Lonicera japonica HOM05D004524 ORTHO05D005477 1.8e-260 904.8 1405 41.7
SEGI_08749 Sequoiadendron giganteum HOM05D004524 ORTHO05D005477 7.7e-256 889.4 1312 41.5
Nitab4.5_0001014g0170 Nicotiana tabacum HOM05D004524 ORTHO05D005477 1.6e-240 838.6 1112 44.2
ClCG01G016450 Citrullus lanatus HOM05D004524 ORTHO05D005477 8.0e-213 746.5 454 84.8
Actinidia30986 Actinidia chinensis HOM05D004524 ORTHO05D005477 1.8e-212 745.3 594 65.5
CARHR159890 Cardamine hirsuta HOM05D004524 ORTHO05D005477 2.0e-200 705.3 1874 31.0
CAN.G836.24 Capsicum annuum HOM05D004524 ORTHO05D005477 3.5e-184 651.4 1899 28.4
MBI16_g31332_MAGBIO Magnolia biondii HOM05D004524 ORTHO05D005477 8.7e-175 620.2 658 52.0
HPP92_018739 Vanilla planifolia HOM05D004524 ORTHO05D005477 1.6e-173 615.9 2035 27.5
Haze_15174 Corylus avellana HOM05D004524 ORTHO05D005477 3.2e-161 575.1 1494 32.1
AUR62027229 Chenopodium quinoa HOM05D004524 ORTHO05D005477 1.8e-156 559.3 1830 28.5
Oeu032928.5 Olea europaea HOM05D004524 ORTHO05D005477 1.0e-154 553.5 1755 27.9
VMungo0251G1417 Vigna mungo HOM05D004524 ORTHO05D005477 1.4e-148 533.1 981 37.4
vmacro17889 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 1.7e-114 419.9 885 34.8
CBR_g51675 Chara braunii HOM05D004524 ORTHO05D005477 8.8e-103 380.9 448 45.8
vmacro17890 Vaccinium macrocarpon HOM05D004524 ORTHO05D005477 1.5e-89 337.0 942 29.9
Peaxi162Scf00535g00736 Petunia axillaris HOM05D004524 ORTHO05D005477 2.5e-89 336.3 1318 25.4
Hma1.2p1_0261F.1_g105050 Hydrangea macrophylla HOM05D004524 ORTHO05D005477 5.6e-89 335.1 883 31.4
Nitab4.5_0001014g0150 Nicotiana tabacum HOM05D004524 ORTHO05D005477 1.6e-88 333.6 1307 25.3
Nitab4.5_0000108g0190 Nicotiana tabacum HOM05D004524 ORTHO05D005477 4.0e-87 328.9 1299 25.8
Lj7A15G50 Lonicera japonica HOM05D004524 ORTHO05D005477 2.2e-85 323.2 864 30.3
Migut.H00499 Erythranthe guttata HOM05D004524 ORTHO05D005477 3.9e-82 312.4 332 53.6
Psat0s4301g0040 Pisum sativum HOM05D004524 ORTHO05D005477 8.3e-77 294.7 939 25.3
ClCG01G016440 Citrullus lanatus HOM05D004524 ORTHO05D005477 4.1e-76 292.4 189 79.4
arahy.Tifrunner.gnm1.ann1.Z7Z8T5 Arachis hypogaea HOM05D004524 ORTHO05D005477 1.0e-74 287.7 874 27.0
Dinv26771 Davidia involucrata HOM05D004524 ORTHO05D005477 1.3e-74 287.3 217 67.3
COL.COLO4_22188 Corchorus olitorius HOM05D004524 ORTHO05D005477 8.9e-71 274.6 909 28.4
Eucgr.H01946 Eucalyptus grandis HOM05D004524 ORTHO05D005477 8.4e-69 268.1 899 26.8
PGSC0003DMG400010031 Solanum tuberosum HOM05D004524 ORTHO05D005477 4.6e-67 262.3 1197 23.6
CDE01G0100 Ceratophyllum demersum HOM05D004524 ORTHO05D005477 7.3e-65 255.0 1019 26.0
COL.COLO4_22187 Corchorus olitorius HOM05D004524 ORTHO05D005477 5.2e-63 248.8 221 57.9
Cpa.g.sc15.77 Carica papaya HOM05D004524 ORTHO05D005477 1.8e-55 223.8 436 36.2
CSS0018787 Camellia sinensis var. sinensis HOM05D004524 ORTHO05D005477 1.7e-53 217.2 380 39.2
FAN08G2497 Fragaria x ananassa HOM05D007595 ORTHO05D009570 2.9e-45 189.9 226 48.2
VMungo0251G3212 Vigna mungo HOM05D004524 ORTHO05D005477 1.1e-44 188.0 671 27.9
Zm00001eb383180 Zea mays HOM05D004524 ORTHO05D005477 1.8e-42 180.6 146 62.3
Zm00001eb381690 Zea mays HOM05D004524 ORTHO05D005477 2.3e-42 180.3 147 61.9
Zm00001eb381740 Zea mays HOM05D004524 ORTHO05D005477 2.3e-42 180.3 146 62.3
Haze_15173 Corylus avellana HOM05D004524 ORTHO05D005477 7.6e-38 165.2 156 50.6
FvH4_5g25081 Fragaria vesca HOM05D004524 ORTHO05D005477 2.7e-35 156.8 139 59.0
GSVIVG01005094001 Vitis vinifera HOM05D004524 ORTHO05D005477 3.0e-34 153.3 105 72.4
Cpa.g.sc15.79 Carica papaya HOM05D004524 ORTHO05D005477 8.7e-34 151.8 546 28.9
CBR_g36529 Chara braunii HOM05D000019 ORTHO05D000002 8.2e-32 145.2 620 24.4
Duzib147G0073 Durio zibethinus HOM05D004524 ORTHO05D005477 4.5e-30 139.4 123 59.3
HPP92_018740 Vanilla planifolia HOM05D004524 ORTHO05D005477 3.7e-24 119.8 331 29.0
arahy.Tifrunner.gnm1.ann1.Y36QTI Arachis hypogaea HOM05D004524 ORTHO05D005477 2.4e-23 117.1 225 32.4
FAN18G1633 Fragaria x ananassa HOM05D004524 ORTHO05D005477 5.3e-23 115.9 172 41.3
Migut.H00498 Erythranthe guttata HOM05D004524 ORTHO05D005477 1.0e-21 111.7 73 69.9
Cpa.g.sc15.76 Carica papaya HOM05D004524 ORTHO05D005477 5.5e-20 105.9 111 51.4
Cpa.g.sc15.83 Carica papaya HOM05D004524 ORTHO05D005477 7.9e-19 102.1 182 35.2
CBR_g36536 Chara braunii HOM05D000019 ORTHO05D000048 5.1e-18 99.4 396 23.2
Glyma.02G062100 Glycine max HOM05D004524 ORTHO05D005477 1.1e-17 98.2 164 36.0
GSVIVG01006100001 Vitis vinifera HOM05D004524 ORTHO05D005477 9.7e-17 95.1 61 78.7
Glyma.02G062000 Glycine max HOM05D004524 ORTHO05D005477 1.4e-15 91.3 171 36.3
CBR_g18614 Chara braunii HOM05D002653 ORTHO05D002623 1.2e-14 88.2 397 25.9
EL10As4g23458 Beta vulgaris HOM05D004524 ORTHO05D005477 1.5e-14 87.8 102 46.1
EL10As7g23744 Beta vulgaris HOM05D004524 ORTHO05D014474 1.1e-12 81.6 239 30.5
Os12g0594200 Oryza sativa ssp. japonica HOM05D004524 ORTHO05D005477 1.1e-12 81.6 201 27.9
Sc03g0009100 Simmondsia chinensis HOM05D004524 ORTHO05D005477 5.5e-12 79.3 97 41.2
Actinidia04030 Actinidia chinensis HOM05D004524 ORTHO05D005477 1.4e-10 74.7 72 56.9
Psat3g094640 Pisum sativum HOM05D004524 ORTHO05D005477 9.7e-09 68.6 77 50.6
SEGI_01312 Sequoiadendron giganteum HOM05D057139 ORTHO05D037600 2.8e-08 67.0 949 20.7
Lsat_1_v5_gn_8_103301 Lactuca sativa HOM05D004524 ORTHO05D005477 1.8e-07 64.3 119 35.3
Cpa.g.sc15.82 Carica papaya HOM05D004524 ORTHO05D005477 2.4e-07 63.9 80 42.5
Glyma.02G061902 Glycine max HOM05D004524 ORTHO05D005477 7.0e-07 62.4 46 67.4


User provided reference genes

Program Settings