Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007497.2 Cucumis melo HOM05D005860 ORTHO05D006977 6.4e-192 674.5 499 100.0
CsaV3_6G042570 Cucumis sativus L. HOM05D005860 ORTHO05D006977 1.5e-148 530.4 456 93.9
ClCG01G016270 Citrullus lanatus HOM05D005860 ORTHO05D006977 4.3e-140 502.3 458 89.7
Sed0023405 Sechium edule HOM05D005860 ORTHO05D006977 6.1e-134 481.9 453 87.4
Sed0015041 Sechium edule HOM05D005860 ORTHO05D006977 3.2e-119 433.0 454 72.5
QL02p072028 Quercus lobata HOM05D005860 ORTHO05D006977 5.0e-104 382.5 441 71.2
CiPaw.04G034700 Carya illinoinensis HOM05D005860 ORTHO05D006977 1.5e-103 380.9 438 66.7
Eucgr.J02311 Eucalyptus grandis HOM05D005860 ORTHO05D006977 3.6e-102 376.3 443 67.0
Atru.chr4.382 Acer truncatum HOM05D005860 ORTHO05D006977 6.8e-101 372.1 456 70.6
TAR622G0256 Trochodendron aralioides HOM05D005860 ORTHO05D006977 4.8e-99 365.9 450 66.9
Haze_14838 Corylus avellana HOM05D005860 ORTHO05D006977 6.3e-99 365.5 489 67.7
Cpa.g.sc171.37 Carica papaya HOM05D005860 ORTHO05D006977 8.3e-99 365.2 473 69.3
Phvul.004G147000 Phaseolus vulgaris HOM05D005860 ORTHO05D006977 1.1e-98 364.8 440 77.0
Manes.15G158200 Manihot esculenta HOM05D005860 ORTHO05D006977 5.4e-98 362.5 461 74.0
Glyma.05G075600 Glycine max HOM05D005860 ORTHO05D006977 7.0e-98 362.1 447 70.9
Potri.017G067600 Populus trichocarpa HOM05D005860 ORTHO05D006977 7.0e-98 362.1 473 69.8
COL.COLO4_03595 Corchorus olitorius HOM05D005860 ORTHO05D006977 3.5e-97 359.8 437 76.4
VMungo0464G0018 Vigna mungo HOM05D005860 ORTHO05D006977 4.5e-97 359.4 437 76.7
Phvul.004G055500 Phaseolus vulgaris HOM05D005860 ORTHO05D006977 1.7e-96 357.5 453 68.0
Lj2g0013553 Lotus japonicus HOM05D005860 ORTHO05D006977 1.1e-95 354.8 453 71.5
Ciclev10011572m.g Citrus clementina HOM05D005860 ORTHO05D006977 3.6e-94 349.7 447 70.0
Gohir.A10G079300 Gossypium hirsutum HOM05D005860 ORTHO05D006977 3.6e-94 349.7 422 69.9
Sabra17G0063700 Salix brachista HOM05D005860 ORTHO05D006977 2.3e-93 347.1 460 67.4
PSO782G4049 Papaver somniferum HOM05D005860 ORTHO05D006977 3.0e-93 346.7 462 67.1
Duzib116G0811 Durio zibethinus HOM05D005860 ORTHO05D006977 2.6e-92 343.6 450 66.4
Gorai.011G077700 Gossypium raimondii HOM05D005860 ORTHO05D006977 5.7e-92 342.4 422 69.0
CANSAT64G0040 Cannabis sativa HOM05D005860 ORTHO05D006977 7.5e-92 342.0 465 66.9
CAN.G473.79 Capsicum annuum HOM05D005860 ORTHO05D006977 7.5e-92 342.0 476 63.9
TWI56G1326 Tripterygium wilfordii HOM05D005860 ORTHO05D006977 7.5e-92 342.0 451 71.6
RcHm_v2.0_Chr2g0174841 Rosa chinensis HOM05D005860 ORTHO05D006977 1.3e-91 341.3 437 76.2
GSVIVG01001819001 Vitis vinifera HOM05D005860 ORTHO05D006977 1.3e-91 341.3 438 72.1
arahy.Tifrunner.gnm1.ann1.SB3XQV Arachis hypogaea HOM05D005860 ORTHO05D006977 1.7e-91 340.9 444 71.4
arahy.Tifrunner.gnm1.ann1.WZ54PF Arachis hypogaea HOM05D005860 ORTHO05D006977 3.7e-91 339.7 444 71.8
PGR083G1804 Punica granatum HOM05D005860 ORTHO05D006977 4.9e-91 339.3 445 52.8
Sopen02g038590 Solanum pennellii HOM05D005860 ORTHO05D006977 6.3e-91 339.0 476 64.7
Hma1.2p1_1219F.1_g267900 Hydrangea macrophylla HOM05D005860 ORTHO05D006977 8.3e-91 338.6 461 65.3
Lj7A609T51 Lonicera japonica HOM05D005860 ORTHO05D006977 1.4e-90 337.8 448 68.1
PGSC0003DMG400020220 Solanum tuberosum HOM05D005860 ORTHO05D006977 1.4e-90 337.8 476 64.7
Solyc02g093940.3 Solanum lycopersicum HOM05D005860 ORTHO05D006977 1.8e-90 337.4 476 64.7
Peaxi162Scf00420g00442 Petunia axillaris HOM05D005860 ORTHO05D006977 4.1e-90 336.3 447 68.9
FvH4_6g53060 Fragaria vesca HOM05D005860 ORTHO05D006977 5.4e-90 335.9 437 75.3
FAN05G4081 Fragaria x ananassa HOM05D005860 ORTHO05D006977 5.4e-90 335.9 437 75.1
MD17G1015100 Malus domestica HOM05D005860 ORTHO05D006977 1.2e-89 334.7 456 71.5
Dinv19535 Davidia involucrata HOM05D005860 ORTHO05D006977 1.6e-89 334.3 433 69.3
Glyma.19G075100 Glycine max HOM05D005860 ORTHO05D006977 4.5e-89 332.8 437 66.4
Oeu058768.1 Olea europaea HOM05D005860 ORTHO05D006977 5.9e-89 332.4 451 65.9
FAN09G0694 Fragaria x ananassa HOM05D005860 ORTHO05D006977 7.7e-89 332.0 437 74.8
Nitab4.5_0002887g0110 Nicotiana tabacum HOM05D005860 ORTHO05D006977 1.3e-88 331.3 467 65.7
Cc02_g00900 Coffea canephora HOM05D005860 ORTHO05D006977 6.6e-88 328.9 443 64.8
Nitab4.5_0009757g0020 Nicotiana tabacum HOM05D005860 ORTHO05D006977 2.5e-87 327.0 455 66.8
Migut.K01447 Erythranthe guttata HOM05D005860 ORTHO05D006977 3.3e-87 326.6 449 64.6
ATR0686G114 Amborella trichopoda HOM05D005860 ORTHO05D006977 7.2e-87 325.5 436 68.1
PSO063G3212 Papaver somniferum HOM05D005860 ORTHO05D006977 9.5e-87 325.1 425 69.2
Actinidia30891 Actinidia chinensis HOM05D005860 ORTHO05D006977 1.2e-86 324.7 459 69.5
Lalb_Chr02g0157831 Lupinus albus HOM05D005860 ORTHO05D006977 2.8e-86 323.6 444 71.2
TPR.G5727 Trifolium pratense HOM05D001503 ORTHO05D003820 2.8e-86 323.6 440 67.3
TAR629G2046 Trochodendron aralioides HOM05D005860 ORTHO05D006977 2.8e-86 323.6 460 62.2
SalBow1G3206 Salvia bowleyana HOM05D005860 ORTHO05D006977 1.8e-85 320.9 452 68.6
SalBow7G2829 Salvia bowleyana HOM05D005860 ORTHO05D006977 1.8e-85 320.9 452 68.6
CSS0015596 Camellia sinensis var. sinensis HOM05D005860 ORTHO05D006977 4.0e-85 319.7 454 69.6
Sc16g0003100 Simmondsia chinensis HOM05D005860 ORTHO05D006977 5.2e-85 319.3 460 66.5
Psat1g161720 Pisum sativum HOM05D005860 ORTHO05D006977 6.8e-85 318.9 443 67.5
CSS0028115 Camellia sinensis var. sinensis HOM05D005860 ORTHO05D006977 1.2e-84 318.2 455 69.5
FAN14G2391 Fragaria x ananassa HOM05D005860 ORTHO05D006977 4.4e-84 316.2 437 65.2
PSO478G3943 Papaver somniferum HOM05D005860 ORTHO05D006977 5.7e-84 315.8 441 68.0
Medtr2g034600 Medicago truncatula HOM05D005860 ORTHO05D006977 2.9e-83 313.5 440 65.9
MSTRG.15567 Avicennia marina HOM05D005860 ORTHO05D006977 3.7e-83 313.2 451 67.6
Aqoxy5G03469 Aquilegia oxysepala HOM05D005860 ORTHO05D006977 4.9e-83 312.8 453 68.2
PSO017G5933 Papaver somniferum HOM05D005860 ORTHO05D006977 8.3e-83 312.0 441 68.9
Thecc.08G160800 Theobroma cacao HOM05D005860 ORTHO05D006977 1.8e-82 310.8 382 73.6
Carub.0007s2760 Capsella rubella HOM05D005860 ORTHO05D006977 2.7e-81 307.0 443 65.9
THA.LOC104825612 Tarenaya hassleriana HOM05D005860 ORTHO05D006977 1.3e-80 304.7 450 64.4
DCAR_021767 Daucus carota HOM05D005860 ORTHO05D006977 2.3e-80 303.9 430 71.2
SGA_v2.0_scaffold7G03541 Striga asiatica HOM05D005860 ORTHO05D006977 8.6e-80 302.0 456 62.5
Lju41A50T54 Lonicera japonica HOM05D005860 ORTHO05D006977 1.1e-79 301.6 451 63.4
CARHR220830 Cardamine hirsuta HOM05D005860 ORTHO05D006977 7.3e-79 298.9 440 66.4
EL10Ac1g02122 Beta vulgaris HOM05D005860 ORTHO05D006977 4.7e-78 296.2 426 69.0
AT4G14605 Arabidopsis thaliana HOM05D005860 ORTHO05D006977 1.0e-77 295.0 443 64.6
Sp7g12700 Schrenkiella parvula HOM05D005860 ORTHO05D006977 1.8e-77 294.3 466 62.0
AL7G41520 Arabidopsis lyrata HOM05D005860 ORTHO05D006977 3.1e-77 293.5 443 63.9
Thhalv10025001m.g Eutrema salsugineum HOM05D005860 ORTHO05D006977 4.0e-77 293.1 444 64.2
C01p28690 Brassica napus HOM05D005860 ORTHO05D006977 1.2e-76 291.6 446 64.1
BolC1t02795H Brassica oleracea HOM05D005860 ORTHO05D006977 1.2e-76 291.6 446 64.1
BcaC09g50132 Brassica carinata HOM05D005860 ORTHO05D006977 1.5e-76 291.2 446 64.1
BraA01t02219Z Brassica rapa HOM05D005860 ORTHO05D006977 2.0e-76 290.8 443 64.6
A01p23060 Brassica napus HOM05D005860 ORTHO05D006977 5.8e-76 289.3 448 64.1
CiPaw.01G128900 Carya illinoinensis HOM05D005860 ORTHO05D006977 1.3e-75 288.1 441 69.2
Aa31LG9G2730 Aethionema arabicum HOM05D005860 ORTHO05D006977 2.2e-75 287.3 447 64.2
unitig_0.g543 Utricularia gibba HOM05D005860 ORTHO05D006977 3.7e-75 286.6 441 64.6
BcaNung00353 Brassica carinata HOM05D005860 ORTHO05D006977 6.4e-75 285.8 445 63.8
Hund24045 Selenicereus undatus HOM05D005860 ORTHO05D006977 1.9e-74 284.3 465 62.8
ECA232G2764 Erigeron canadensis HOM05D005860 ORTHO05D006977 1.6e-73 281.2 455 62.2
HanXRQChr15g0486891 Helianthus annuus HOM05D005860 ORTHO05D006977 1.6e-73 281.2 466 62.9
Ah.03g142080 Amaranthus hybridus HOM05D005860 ORTHO05D006977 4.6e-73 279.6 424 67.0
Nn4g22386 Nelumbo nucifera HOM05D005860 ORTHO05D006977 7.8e-73 278.9 385 56.4
AUR62043070 Chenopodium quinoa HOM05D005860 ORTHO05D006977 5.0e-72 276.2 426 67.1
AUR62032474 Chenopodium quinoa HOM05D005860 ORTHO05D006977 5.6e-71 272.7 426 66.2
Glyma.09G171700 Glycine max HOM05D005860 ORTHO05D006977 2.3e-69 267.3 215 66.0
CDE09G0687 Ceratophyllum demersum HOM05D005860 ORTHO05D006977 3.7e-67 260.0 407 59.0
vmacro18326 Vaccinium macrocarpon HOM05D005860 ORTHO05D006977 1.6e-65 254.6 451 53.7
Rhsim08G0044500 Rhododendron simsii HOM05D005860 ORTHO05D006977 1.5e-63 248.1 452 46.5
Zm00001eb246440 Zea mays HOM05D005860 ORTHO05D006977 8.1e-62 242.3 434 57.1
Prupe.3G302700 Prunus persica HOM05D005860 ORTHO05D006977 1.4e-61 241.5 348 77.3
Gohir.D10G072200 Gossypium hirsutum HOM05D005860 ORTHO05D006977 5.2e-61 239.6 184 65.8
Rhsim08G0044400 Rhododendron simsii HOM05D005860 ORTHO05D006977 8.4e-59 232.3 448 54.7
Rhsim08G0045000 Rhododendron simsii HOM05D005860 ORTHO05D006977 1.4e-58 231.5 474 58.0
Oeu050423.1 Olea europaea HOM05D005860 ORTHO05D006977 1.9e-58 231.1 210 60.0
Rhsim08G0044700 Rhododendron simsii HOM05D005860 ORTHO05D006977 1.3e-56 224.9 464 44.2
Cfa015733 Carpinus fangiana HOM05D005860 ORTHO05D006977 5.6e-47 193.0 153 64.1
Lsat_1_v5_gn_4_185440 Lactuca sativa HOM05D005860 ORTHO05D006977 6.6e-40 169.5 357 65.0
Haze_00763 Corylus avellana HOM05D005860 ORTHO05D006977 2.1e-38 164.5 364 46.4
HPP92_024250 Vanilla planifolia HOM05D005860 ORTHO05D006977 1.8e-37 161.4 329 59.3
HPP92_024230 Vanilla planifolia HOM05D005860 ORTHO05D006977 1.7e-35 154.8 322 60.2
Migut.C00523 Erythranthe guttata HOM05D005860 ORTHO05D006977 6.7e-32 142.9 125 63.2
Rhsim08G0044900 Rhododendron simsii HOM05D005860 ORTHO05D006977 7.4e-31 139.4 362 43.6
ATR0686G162 Amborella trichopoda HOM05D005860 ORTHO05D006977 9.0e-29 132.5 351 33.9
FAN14G0528 Fragaria x ananassa HOM05D005860 ORTHO05D006977 1.2e-28 132.1 262 70.6
Sed0001458 Sechium edule HOM05D005860 ORTHO05D006977 2.6e-28 131.0 108 69.4
Mapoly0029s0044 Marchantia polymorpha HOM05D005860 ORTHO05D006977 2.1e-25 121.3 408 42.6
Os02g0602400 Oryza sativa ssp. japonica HOM05D005860 ORTHO05D006977 3.5e-25 120.6 260 51.2
Glyma.09G171766 Glycine max HOM05D005860 ORTHO05D006977 3.0e-24 117.5 135 75.6
Pp3c9_18330 Physcomitrium patens HOM05D005860 ORTHO05D006977 1.0e-19 102.4 433 42.3
ATR0609G011 Amborella trichopoda HOM05D005860 ORTHO05D006977 1.9e-18 98.2 263 38.0
Rhsim08G0044800 Rhododendron simsii HOM05D005860 ORTHO05D006977 3.2e-18 97.4 103 55.3
vmacro18330 Vaccinium macrocarpon HOM05D005860 ORTHO05D006977 3.2e-18 97.4 116 47.4
Pp3c15_12290 Physcomitrium patens HOM05D005860 ORTHO05D006977 2.1e-17 94.7 422 46.7
AagrBONN_evm.TU.Sc2ySwM_117.926 Anthoceros agrestis HOM05D000273 ORTHO05D006977 5.1e-16 90.1 152 35.5
TAR374G0650 Trochodendron aralioides HOM05D005860 ORTHO05D006977 8.7e-16 89.4 172 37.8
HPP92_024251 Vanilla planifolia HOM05D005860 ORTHO05D006977 3.3e-15 87.4 93 45.2
vmacro18328 Vaccinium macrocarpon HOM05D005860 ORTHO05D006977 5.9e-12 76.6 88 51.1
TAR374G0834 Trochodendron aralioides HOM05D005860 ORTHO05D006977 1.6e-09 68.6 49 65.3
TPR.G88 Trifolium pratense HOM05D005860 ORTHO05D006977 4.6e-09 67.0 49 61.2
Mapoly0007s0012 Marchantia polymorpha HOM05D005860 ORTHO05D006977 3.3e-07 60.8 156 32.1
vmacro18327 Vaccinium macrocarpon HOM05D005860 ORTHO05D006977 4.4e-07 60.5 98 53.1
SHI09181 Sapria himalayana HOM05D002901 ORTHO05D003183 3.7e-06 57.4 96 35.4
Potri.013G116700 Populus trichocarpa HOM05D002901 ORTHO05D003183 6.3e-06 56.6 90 33.3


User provided reference genes

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