Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007486.2 Cucumis melo HOM05D006985 ORTHO05D008749 6.8e-105 384.0 199 100.0
CsaV3_6G042430 Cucumis sativus L. HOM05D006985 ORTHO05D008749 1.2e-96 356.7 197 93.4
ClCG01G016160 Citrullus lanatus HOM05D006985 ORTHO05D008749 3.4e-88 328.6 197 88.8
Sed0020932 Sechium edule HOM05D006985 ORTHO05D008749 1.0e-79 300.4 199 79.4
Glyma.08G141300 Glycine max HOM05D006985 ORTHO05D008749 6.7e-60 234.6 200 64.0
CiPaw.04G092100 Carya illinoinensis HOM05D006985 ORTHO05D008749 9.7e-59 230.7 199 61.8
Lalb_Chr13g0296201 Lupinus albus HOM05D006985 ORTHO05D008749 1.3e-58 230.3 199 63.8
Glyma.05G183500 Glycine max HOM05D006985 ORTHO05D008749 2.8e-58 229.2 200 63.5
Manes.12G142400 Manihot esculenta HOM05D006985 ORTHO05D008749 4.8e-58 228.4 199 61.8
VMungo0251G1437 Vigna mungo HOM05D006985 ORTHO05D008749 1.1e-57 227.3 198 64.6
Potri.005G084200 Populus trichocarpa HOM05D006985 ORTHO05D008749 2.4e-57 226.1 196 64.3
Sabra05G0069300 Salix brachista HOM05D006985 ORTHO05D008749 6.9e-57 224.6 197 63.5
Thecc.01G112400 Theobroma cacao HOM05D006985 ORTHO05D008749 6.9e-57 224.6 202 61.9
CAN.G276.1 Capsicum annuum HOM05D006985 ORTHO05D008749 1.5e-56 223.4 186 65.6
TAR625G1052 Trochodendron aralioides HOM05D006985 ORTHO05D008749 1.5e-56 223.4 199 63.3
Nn5g28916 Nelumbo nucifera HOM05D006985 ORTHO05D008749 3.4e-56 222.2 198 62.1
arahy.Tifrunner.gnm1.ann1.MHK3H7 Arachis hypogaea HOM05D006985 ORTHO05D008749 5.9e-56 221.5 200 62.5
Duzib147G0418 Durio zibethinus HOM05D006985 ORTHO05D008749 5.9e-56 221.5 200 62.0
CANSAT01G0007 Cannabis sativa HOM05D006985 ORTHO05D008749 7.7e-56 221.1 207 60.4
TWI53G2009 Tripterygium wilfordii HOM05D006985 ORTHO05D008749 1.0e-55 220.7 178 68.5
GSVIVG01022222001 Vitis vinifera HOM05D006985 ORTHO05D008749 1.3e-55 220.3 198 63.1
arahy.Tifrunner.gnm1.ann1.7DG6XK Arachis hypogaea HOM05D006985 ORTHO05D008749 1.7e-55 219.9 200 62.0
PGR004G1495 Punica granatum HOM05D006985 ORTHO05D008749 2.2e-55 219.5 208 62.0
Atru.chr4.358 Acer truncatum HOM05D006985 ORTHO05D008749 2.9e-55 219.2 156 75.0
Actinidia28892 Actinidia chinensis HOM05D006985 ORTHO05D008749 3.8e-55 218.8 196 60.7
Cfa002750 Carpinus fangiana HOM05D006985 ORTHO05D008749 5.0e-55 218.4 203 59.6
QL06p032211 Quercus lobata HOM05D006985 ORTHO05D008749 8.5e-55 217.6 205 61.0
Ciclev10026526m.g Citrus clementina HOM05D006985 ORTHO05D008749 1.1e-54 217.2 154 74.0
Haze_25036 Corylus avellana HOM05D006985 ORTHO05D008749 1.4e-54 216.9 203 60.1
ECA238G4202 Erigeron canadensis HOM05D006985 ORTHO05D008749 1.4e-54 216.9 202 60.4
Peaxi162Scf00323g00052 Petunia axillaris HOM05D006985 ORTHO05D008749 1.4e-54 216.9 198 62.1
Phvul.002G264600 Phaseolus vulgaris HOM05D006985 ORTHO05D008749 3.2e-54 215.7 198 62.1
Ca_17697_v3 Cicer arietinum L. HOM05D006985 ORTHO05D008749 4.2e-54 215.3 197 62.9
Lj2A564T40 Lonicera japonica HOM05D006985 ORTHO05D008749 4.2e-54 215.3 201 60.2
Solyc04g053130.4 Solanum lycopersicum HOM05D006985 ORTHO05D008749 4.2e-54 215.3 182 64.8
PGSC0003DMG400016590 Solanum tuberosum HOM05D006985 ORTHO05D008749 5.5e-54 214.9 155 73.5
Eucgr.I00326 Eucalyptus grandis HOM05D006985 ORTHO05D008749 7.2e-54 214.5 206 59.7
Sopen04g023520 Solanum pennellii HOM05D006985 ORTHO05D008749 7.2e-54 214.5 182 64.3
COL.COLO4_11016 Corchorus olitorius HOM05D006985 ORTHO05D008749 1.6e-53 213.4 198 61.6
Gohir.A02G134801 Gossypium hirsutum HOM05D006985 ORTHO05D008749 2.7e-53 212.6 199 60.8
Gohir.D03G045800 Gossypium hirsutum HOM05D006985 ORTHO05D008749 3.6e-53 212.2 199 60.8
Gorai.003G047000 Gossypium raimondii HOM05D006985 ORTHO05D008749 3.6e-53 212.2 199 60.8
Oeu028373.1 Olea europaea HOM05D006985 ORTHO05D008749 1.0e-52 210.7 194 61.9
Oeu030683.1 Olea europaea HOM05D006985 ORTHO05D008749 1.0e-52 210.7 177 67.2
Rhsim08G0007300 Rhododendron simsii HOM05D006985 ORTHO05D008749 1.4e-52 210.3 202 59.9
Cc07_g16120 Coffea canephora HOM05D006985 ORTHO05D008749 1.8e-52 209.9 161 68.3
Dinv42695 Davidia involucrata HOM05D006985 ORTHO05D008749 1.8e-52 209.9 188 63.8
Lsat_1_v5_gn_2_67381 Lactuca sativa HOM05D006985 ORTHO05D008749 2.3e-52 209.5 204 60.3
Nitab4.5_0000471g0030 Nicotiana tabacum HOM05D006985 ORTHO05D008749 2.3e-52 209.5 199 59.8
Duzib187G0142 Durio zibethinus HOM05D006985 ORTHO05D008749 3.9e-52 208.8 200 59.0
Lj4g0016816 Lotus japonicus HOM05D006985 ORTHO05D008749 3.9e-52 208.8 202 58.4
Rhsim10G0013600 Rhododendron simsii HOM05D006985 ORTHO05D008749 5.2e-52 208.4 197 59.9
Cpa.g.sc196.10 Carica papaya HOM05D006985 ORTHO05D008749 1.1e-51 207.2 192 62.5
Rhsim08G0006600 Rhododendron simsii HOM05D006985 ORTHO05D008749 2.0e-51 206.5 154 70.1
Psat7g051440 Pisum sativum HOM05D006985 ORTHO05D008749 2.6e-51 206.1 193 60.6
THA.LOC104804144 Tarenaya hassleriana HOM05D006985 ORTHO05D008749 2.6e-51 206.1 203 57.1
MSTRG.23313 Avicennia marina HOM05D006985 ORTHO05D008749 3.7e-50 202.2 195 59.0
Hma1.2p1_0375F.1_g138690 Hydrangea macrophylla HOM05D006985 ORTHO05D008749 3.7e-50 202.2 183 60.7
HanXRQChr14g0446291 Helianthus annuus HOM05D006985 ORTHO05D008749 1.8e-49 199.9 205 55.6
MBI02_g45734_MAGBIO Magnolia biondii HOM05D006985 ORTHO05D008749 3.1e-49 199.1 173 60.7
MBI02_g20708_MAGBIO Magnolia biondii HOM05D006985 ORTHO05D008749 4.1e-49 198.7 191 57.6
DCAR_010078 Daucus carota HOM05D006985 ORTHO05D008749 9.1e-49 197.6 180 58.9
CSS0027796 Camellia sinensis var. sinensis HOM05D006985 ORTHO05D008749 1.2e-48 197.2 192 59.4
CSS0005033 Camellia sinensis var. sinensis HOM05D006985 ORTHO05D008749 1.6e-48 196.8 193 58.5
MD15G1333400 Malus domestica HOM05D006985 ORTHO05D008749 5.9e-48 194.9 192 58.3
Prupe.6G173300 Prunus persica HOM05D006985 ORTHO05D008749 7.7e-48 194.5 202 55.9
FAN23G1894 Fragaria x ananassa HOM05D006985 ORTHO05D008749 2.2e-47 193.0 176 59.1
RcHm_v2.0_Chr2g0116361 Rosa chinensis HOM05D006985 ORTHO05D008749 2.9e-47 192.6 176 61.9
FvH4_1g22220 Fragaria vesca HOM05D006985 ORTHO05D008749 5.0e-47 191.8 176 58.5
Sp4g01050 Schrenkiella parvula HOM05D006985 ORTHO05D008749 8.5e-47 191.0 202 54.5
AT2G21970 Arabidopsis thaliana HOM05D006985 ORTHO05D008749 2.5e-46 189.5 205 52.7
Thhalv10000325m.g Eutrema salsugineum HOM05D006985 ORTHO05D008749 3.2e-46 189.1 204 51.0
EL10Ac6g14751 Beta vulgaris HOM05D006985 ORTHO05D008749 4.2e-46 188.7 175 58.9
A09p57880 Brassica napus HOM05D006985 ORTHO05D008749 9.4e-46 187.6 198 52.5
Dinv19490 Davidia involucrata HOM05D006985 ORTHO05D008749 9.4e-46 187.6 145 70.3
SalBow6G7167 Salvia bowleyana HOM05D006985 ORTHO05D008749 9.4e-46 187.6 155 63.2
Carub.0004s0111 Capsella rubella HOM05D006985 ORTHO05D008749 1.2e-45 187.2 204 52.9
AL4G11290 Arabidopsis lyrata HOM05D006985 ORTHO05D008749 1.6e-45 186.8 205 54.6
Aa31LG7G14690 Aethionema arabicum HOM05D006985 ORTHO05D008749 2.1e-45 186.4 156 63.5
C08p41110 Brassica napus HOM05D006985 ORTHO05D008749 2.1e-45 186.4 198 52.0
BolC8t51677H Brassica oleracea HOM05D006985 ORTHO05D008749 2.1e-45 186.4 198 52.0
BraA09t41180Z Brassica rapa HOM05D006985 ORTHO05D008749 2.1e-45 186.4 198 52.0
SGA_v2.0_scaffold51G18747 Striga asiatica HOM05D006985 ORTHO05D008749 2.1e-45 186.4 161 60.9
BcaC07g41109 Brassica carinata HOM05D006985 ORTHO05D008749 2.7e-45 186.0 198 52.0
Aqoxy7G01607 Aquilegia oxysepala HOM05D006985 ORTHO05D008749 4.7e-45 185.3 161 59.0
BcaB08g35014 Brassica carinata HOM05D006985 ORTHO05D008749 6.1e-45 184.9 202 53.5
Ah.03g141710 Amaranthus hybridus HOM05D006985 ORTHO05D008749 1.0e-44 184.1 191 56.0
Migut.H02428 Erythranthe guttata HOM05D006985 ORTHO05D008749 1.8e-44 183.3 187 55.1
Aqoxy5G01954 Aquilegia oxysepala HOM05D006985 ORTHO05D008749 4.0e-44 182.2 161 58.4
AUR62003309 Chenopodium quinoa HOM05D006985 ORTHO05D008749 5.2e-44 181.8 176 58.5
vmacro18630 Vaccinium macrocarpon HOM05D006985 ORTHO05D008749 5.2e-44 181.8 208 50.5
AUR62016276 Chenopodium quinoa HOM05D006985 ORTHO05D008749 6.7e-44 181.4 207 53.1
MSTRG.3810 Avicennia marina HOM05D006985 ORTHO05D008749 1.2e-43 180.6 155 63.2
Sc16g0004160 Simmondsia chinensis HOM05D006985 ORTHO05D008749 1.3e-42 177.2 197 52.8
Hund03540 Selenicereus undatus HOM05D006985 ORTHO05D008749 8.2e-42 174.5 207 52.2
Zm00001eb431840 Zea mays HOM05D006985 ORTHO05D008749 1.0e-39 167.5 170 50.6
CDE02G4368 Ceratophyllum demersum HOM05D006985 ORTHO05D008749 5.0e-39 165.2 170 52.4
PSO210G1005 Papaver somniferum HOM05D006985 ORTHO05D008749 4.2e-38 162.2 181 47.5
HPP92_013077 Vanilla planifolia HOM05D006985 ORTHO05D008749 2.3e-36 156.4 155 52.3
Os04g0639200 Oryza sativa ssp. japonica HOM05D006985 ORTHO05D008749 6.8e-36 154.8 183 46.4
ATR0564G194 Amborella trichopoda HOM05D006985 ORTHO05D008749 1.2e-32 144.1 162 51.2
SEGI_00004 Sequoiadendron giganteum HOM05D006985 ORTHO05D008749 2.1e-29 133.3 154 46.8
CARHR113060 Cardamine hirsuta HOM05D006985 ORTHO05D008749 9.8e-27 124.4 92 65.2
PSO170G0586 Papaver somniferum HOM05D006985 ORTHO05D008749 4.5e-24 115.5 187 42.8
Hund19658 Selenicereus undatus HOM05D006985 ORTHO05D008749 1.7e-23 113.6 118 50.8
AagrBONN_evm.TU.Sc2ySwM_362.2621 Anthoceros agrestis HOM05D006985 ORTHO05D008749 1.4e-17 94.0 148 36.5
SMO174G0105 Selaginella moellendorffii HOM05D006985 ORTHO05D008749 6.6e-15 85.1 143 31.5
Mapoly0007s0046 Marchantia polymorpha HOM05D006985 ORTHO05D008749 4.7e-13 79.0 151 33.8
SMO356G0636 Selaginella moellendorffii HOM05D006985 ORTHO05D008749 3.1e-12 76.3 143 30.1
FAN26G1540 Fragaria x ananassa HOM05D000436 ORTHO05D000678 8.9e-12 74.7 86 48.8
Pp3c16_13700 Physcomitrium patens HOM05D006985 ORTHO05D008749 1.2e-11 74.3 167 31.1
CARHR113050 Cardamine hirsuta HOM05D006985 ORTHO05D008749 2.0e-11 73.6 115 44.3
Pp3c27_3810 Physcomitrium patens HOM05D006985 ORTHO05D008749 3.4e-11 72.8 143 32.2
CBR_g770 Chara braunii HOM05D006985 ORTHO05D008749 3.7e-10 69.3 142 31.0
CDE08G1171 Ceratophyllum demersum HOM05D000290 ORTHO05D009072 1.2e-08 64.3 82 45.1
unitig_88.g27736 Utricularia gibba HOM05D006985 ORTHO05D008749 1.6e-08 63.9 103 41.7


User provided reference genes

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