Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007453.2 Cucumis melo HOM05D000786 ORTHO05D006216 6.1e-42 173.7 87 100.0
CsaV3_6G042150 Cucumis sativus L. HOM05D000786 ORTHO05D006216 1.3e-39 166.0 85 95.3
ClCG01G015870 Citrullus lanatus HOM05D000786 ORTHO05D006216 6.0e-37 157.1 85 89.4
Atru.chr4.724 Acer truncatum HOM05D000786 ORTHO05D006216 1.1e-22 109.8 89 62.9
RcHm_v2.0_Chr2g0117891 Rosa chinensis HOM05D000786 ORTHO05D006216 1.6e-21 105.9 93 60.2
FAN26G3223 Fragaria x ananassa HOM05D000786 ORTHO05D006216 3.0e-20 101.7 93 58.1
FAN19G0145 Fragaria x ananassa HOM05D000786 ORTHO05D006216 6.6e-20 100.5 93 57.0
FAN23G1700 Fragaria x ananassa HOM05D000786 ORTHO05D006216 6.6e-20 100.5 93 57.0
PGR119G2557 Punica granatum HOM05D000786 ORTHO05D006216 6.6e-20 100.5 90 61.1
FvH4_1g23170 Fragaria vesca HOM05D000786 ORTHO05D006216 8.6e-20 100.1 93 57.0
Ciclev10026866m.g Citrus clementina HOM05D000786 ORTHO05D006216 1.5e-19 99.4 83 65.1
Prupe.6G166900 Prunus persica HOM05D000786 ORTHO05D006216 3.3e-19 98.2 91 57.1
Potri.007G077500 Populus trichocarpa HOM05D000786 ORTHO05D006216 4.3e-19 97.8 90 57.8
Manes.12G145200 Manihot esculenta HOM05D000786 ORTHO05D006216 5.6e-19 97.4 91 59.3
MD15G1335800 Malus domestica HOM05D000786 ORTHO05D006216 9.5e-19 96.7 91 57.1
Haze_25081 Corylus avellana HOM05D000786 ORTHO05D006216 2.8e-18 95.1 88 58.0
FAN28G3029 Fragaria x ananassa HOM05D000786 ORTHO05D006216 3.6e-18 94.7 86 58.1
Lsat_1_v5_gn_4_138400 Lactuca sativa HOM05D000786 ORTHO05D006216 6.2e-18 94.0 82 61.0
COL.COLO4_03470 Corchorus olitorius HOM05D000786 ORTHO05D006216 1.1e-17 93.2 91 60.4
HanXRQChr15g0493541 Helianthus annuus HOM05D000786 ORTHO05D006216 1.4e-17 92.8 82 59.8
Hma1.2p1_0529F.1_g173260 Hydrangea macrophylla HOM05D000786 ORTHO05D006216 1.4e-17 92.8 85 56.5
Cfa002784 Carpinus fangiana HOM05D000786 ORTHO05D006216 2.4e-17 92.0 88 56.8
Migut.L00056 Erythranthe guttata HOM05D000786 ORTHO05D006216 2.4e-17 92.0 84 54.8
HanXRQChr09g0254011 Helianthus annuus HOM05D000786 ORTHO05D006216 5.2e-17 90.9 82 58.5
QL06p031416 Quercus lobata HOM05D000786 ORTHO05D006216 6.8e-17 90.5 89 53.9
Cc07_g16650 Coffea canephora HOM05D000786 ORTHO05D006216 8.9e-17 90.1 84 57.1
Sabra07G0065500 Salix brachista HOM05D000786 ORTHO05D006216 1.2e-16 89.7 83 59.0
MSTRG.3817 Avicennia marina HOM05D000786 ORTHO05D006216 2.6e-16 88.6 85 55.3
Rhsim10G0146600 Rhododendron simsii HOM05D000786 ORTHO05D006216 3.4e-16 88.2 86 54.7
Rhsim10G0147300 Rhododendron simsii HOM05D000786 ORTHO05D006216 3.4e-16 88.2 86 54.7
Sabra05G0071600 Salix brachista HOM05D000786 ORTHO05D006216 3.4e-16 88.2 89 51.7
CAN.G1248.27 Capsicum annuum HOM05D000786 ORTHO05D006216 9.9e-16 86.7 84 54.8
SalBow5G2955 Salvia bowleyana HOM05D000786 ORTHO05D006216 1.7e-15 85.9 84 53.6
PGSC0003DMG402019696 Solanum tuberosum HOM05D000786 ORTHO05D006216 1.7e-15 85.9 84 54.8
DCAR_011463 Daucus carota HOM05D000786 ORTHO05D006216 3.8e-15 84.7 83 56.6
Hund03512 Selenicereus undatus HOM05D005778 ORTHO05D007245 4.9e-15 84.3 90 53.3
Solyc04g051470.1 Solanum lycopersicum HOM05D000786 ORTHO05D006216 4.9e-15 84.3 84 53.6
Sopen04g022850 Solanum pennellii HOM05D000786 ORTHO05D006216 4.9e-15 84.3 84 53.6
CiPaw.03G131800 Carya illinoinensis HOM05D000786 ORTHO05D006216 6.4e-15 84.0 94 51.1
TAR381G0907 Trochodendron aralioides HOM05D000786 ORTHO05D006216 1.9e-14 82.4 90 51.1
Oeu028354.1 Olea europaea HOM05D000786 ORTHO05D006216 5.4e-14 80.9 86 54.7
Glyma.06G148000 Glycine max HOM05D000786 ORTHO05D006216 1.2e-13 79.7 84 54.8
Oeu015843.1 Olea europaea HOM05D000786 ORTHO05D006216 1.2e-13 79.7 87 51.7
unitig_747.g21813 Utricularia gibba HOM05D000786 ORTHO05D006216 2.7e-13 78.6 79 54.4
CSS0001280 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D006216 3.5e-13 78.2 87 50.6
SGA_v2.0_scaffold34G13633 Striga asiatica HOM05D000786 ORTHO05D006216 3.5e-13 78.2 79 54.4
EL10Ac6g15224 Beta vulgaris HOM05D005778 ORTHO05D007245 4.6e-13 77.8 82 52.4
CANSAT25G1840 Cannabis sativa HOM05D000786 ORTHO05D006216 4.6e-13 77.8 87 48.3
MBI16_g14985_MAGBIO Magnolia biondii HOM05D000786 ORTHO05D006216 4.6e-13 77.8 83 49.4
Glyma.04G217900 Glycine max HOM05D000786 ORTHO05D006216 6.0e-13 77.4 84 56.0
Actinidia17774 Actinidia chinensis HOM05D000786 ORTHO05D006216 7.8e-13 77.0 90 44.4
Potri.005G195800 Populus trichocarpa HOM05D000786 ORTHO05D006216 1.3e-12 76.3 90 47.8
Sabra05G0149300 Salix brachista HOM05D000786 ORTHO05D006216 1.3e-12 76.3 83 50.6
Lalb_Chr08g0238761 Lupinus albus HOM05D000786 ORTHO05D006216 1.7e-12 75.9 84 50.0
Manes.18G094200 Manihot esculenta HOM05D000786 ORTHO05D006216 1.7e-12 75.9 82 51.2
Cfa018290 Carpinus fangiana HOM05D000786 ORTHO05D006216 2.3e-12 75.5 90 47.8
Haze_17797 Corylus avellana HOM05D000786 ORTHO05D006216 2.3e-12 75.5 90 47.8
GSVIVG01034575001 Vitis vinifera HOM05D000786 ORTHO05D006216 2.3e-12 75.5 89 48.3
Gohir.A02G063100 Gossypium hirsutum HOM05D000786 ORTHO05D006216 3.0e-12 75.1 91 46.2
Potri.002G065200 Populus trichocarpa HOM05D000786 ORTHO05D006216 3.0e-12 75.1 90 47.8
unitig_0.g1746 Utricularia gibba HOM05D000786 ORTHO05D006216 3.0e-12 75.1 67 58.2
QL02p038248 Quercus lobata HOM05D000786 ORTHO05D006216 3.9e-12 74.7 89 44.9
Gohir.D02G068800 Gossypium hirsutum HOM05D000786 ORTHO05D006216 5.1e-12 74.3 90 46.7
Gorai.005G077700 Gossypium raimondii HOM05D000786 ORTHO05D006216 5.1e-12 74.3 90 46.7
RcHm_v2.0_Chr6g0274371 Rosa chinensis HOM05D000786 ORTHO05D006216 5.1e-12 74.3 90 47.8
Duzib116G0195 Durio zibethinus HOM05D000786 ORTHO05D006216 8.7e-12 73.6 90 46.7
FvH4_2g13100 Fragaria vesca HOM05D000786 ORTHO05D006216 8.7e-12 73.6 90 46.7
FAN15G3470 Fragaria x ananassa HOM05D000786 ORTHO05D006216 8.7e-12 73.6 90 46.7
FAN20G2557 Fragaria x ananassa HOM05D000786 ORTHO05D006216 8.7e-12 73.6 90 46.7
FAN24G2413 Fragaria x ananassa HOM05D000786 ORTHO05D006216 8.7e-12 73.6 90 46.7
FAN27G0158 Fragaria x ananassa HOM05D000786 ORTHO05D006216 8.7e-12 73.6 90 46.7
COL.COLO4_03364 Corchorus olitorius HOM05D000786 ORTHO05D006216 1.5e-11 72.8 90 44.4
Phvul.007G082800 Phaseolus vulgaris HOM05D000786 ORTHO05D006216 1.9e-11 72.4 90 48.9
TPR.G10805 Trifolium pratense HOM05D000786 ORTHO05D006216 1.9e-11 72.4 90 47.8
Aqoxy5G02027 Aquilegia oxysepala HOM05D000786 ORTHO05D006216 2.5e-11 72.0 88 50.0
Aqoxy5G02029 Aquilegia oxysepala HOM05D000786 ORTHO05D006216 2.5e-11 72.0 88 50.0
Nn1g06009 Nelumbo nucifera HOM05D000786 ORTHO05D006216 2.5e-11 72.0 71 52.1
Cpa.g.sc49.82 Carica papaya HOM05D000786 ORTHO05D006216 4.3e-11 71.2 86 48.8
Glyma.20G169300 Glycine max HOM05D000786 ORTHO05D006216 4.3e-11 71.2 90 47.8
Peaxi162Scf00025g00337 Petunia axillaris HOM05D000786 ORTHO05D006216 4.3e-11 71.2 84 50.0
BcaB01g01430 Brassica carinata HOM05D000786 ORTHO05D006216 7.3e-11 70.5 81 49.4
Dinv25892 Davidia involucrata HOM05D000786 ORTHO05D006216 7.3e-11 70.5 90 45.6
Medtr1g098310 Medicago truncatula HOM05D000786 ORTHO05D006216 7.3e-11 70.5 90 46.7
Prupe.8G039100 Prunus persica HOM05D000786 ORTHO05D006216 7.3e-11 70.5 81 48.1
Thecc.08G158200 Theobroma cacao HOM05D000786 ORTHO05D006216 9.6e-11 70.1 90 44.4
CSS0019732 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D006216 1.3e-10 69.7 92 45.7
CARHR260880 Cardamine hirsuta HOM05D000786 ORTHO05D006216 1.3e-10 69.7 87 46.0
ClCG08G003150 Citrullus lanatus HOM05D000786 ORTHO05D006216 1.6e-10 69.3 90 43.3
Glyma.10G222300 Glycine max HOM05D000786 ORTHO05D006216 1.6e-10 69.3 90 45.6
MD10G1033400 Malus domestica HOM05D000786 ORTHO05D006216 2.1e-10 68.9 80 48.8
Cc10_g15160 Coffea canephora HOM05D000786 ORTHO05D006216 3.6e-10 68.2 87 44.8
Sed0024174 Sechium edule HOM05D000786 ORTHO05D006216 3.6e-10 68.2 90 42.2
THA.LOC109116395 Tarenaya hassleriana HOM05D000786 ORTHO05D006216 3.6e-10 68.2 79 48.1
AL6G43590 Arabidopsis lyrata HOM05D000786 ORTHO05D006216 4.8e-10 67.8 81 46.9
AT4G09890 Arabidopsis thaliana HOM05D000786 ORTHO05D006216 4.8e-10 67.8 81 46.9
Thhalv10029196m.g Eutrema salsugineum HOM05D000786 ORTHO05D006216 4.8e-10 67.8 87 44.8
Glyma.16G163900 Glycine max HOM05D000786 ORTHO05D006216 4.8e-10 67.8 81 45.7
Sp6g07600 Schrenkiella parvula HOM05D000786 ORTHO05D006216 4.8e-10 67.8 81 46.9
Aa31LG9G12090 Aethionema arabicum HOM05D000786 ORTHO05D006216 6.2e-10 67.4 86 45.3
BcaC04g20992 Brassica carinata HOM05D000786 ORTHO05D006216 6.2e-10 67.4 81 46.9
CsaV3_6G002840 Cucumis sativus L. HOM05D000786 ORTHO05D006216 6.2e-10 67.4 90 42.2
Phvul.004G091400 Phaseolus vulgaris HOM05D000786 ORTHO05D006216 6.2e-10 67.4 81 45.7
MELO3C024975.2 Cucumis melo HOM05D000786 ORTHO05D006216 8.1e-10 67.0 90 42.2
Sc16g0004100 Simmondsia chinensis HOM05D000786 ORTHO05D006216 8.1e-10 67.0 84 42.9
CSS0042693 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D006216 1.1e-09 66.6 90 46.7
Carub.0006s2842 Capsella rubella HOM05D000786 ORTHO05D006216 1.1e-09 66.6 81 46.9
Lj5g0026860 Lotus japonicus HOM05D000786 ORTHO05D006216 1.1e-09 66.6 91 46.2
ATR0800G011 Amborella trichopoda HOM05D000786 ORTHO05D006216 1.4e-09 66.2 79 48.1
Lsat_1_v5_gn_9_42040 Lactuca sativa HOM05D000786 ORTHO05D006216 1.4e-09 66.2 90 42.2
Nn5g28813 Nelumbo nucifera HOM05D000786 ORTHO05D006216 1.4e-09 66.2 90 43.3
Peaxi162Scf00360g10014 Petunia axillaris HOM05D000786 ORTHO05D006216 1.4e-09 66.2 91 41.8
CiPaw.15G013200 Carya illinoinensis HOM05D000786 ORTHO05D006216 1.8e-09 65.9 90 43.3
Thecc.01G116900 Theobroma cacao HOM05D000786 ORTHO05D006216 2.4e-09 65.5 67 59.7
CAN.G495.6 Capsicum annuum HOM05D000786 ORTHO05D006216 3.1e-09 65.1 94 40.4
Eucgr.F02688 Eucalyptus grandis HOM05D000786 ORTHO05D006216 3.1e-09 65.1 89 46.1
Lalb_Chr06g0161691 Lupinus albus HOM05D000786 ORTHO05D006216 4.0e-09 64.7 81 44.4
TWI34G1146 Tripterygium wilfordii HOM05D000786 ORTHO05D006216 4.0e-09 64.7 81 50.6
Ah.05g168150 Amaranthus hybridus HOM05D000786 ORTHO05D006216 5.3e-09 64.3 85 45.9
SalBow6G2838 Salvia bowleyana HOM05D000786 ORTHO05D006216 5.3e-09 64.3 90 44.4
PGSC0003DMG400025091 Solanum tuberosum HOM05D000786 ORTHO05D006216 5.3e-09 64.3 90 44.4
Atru.chr13.2022 Acer truncatum HOM05D000786 ORTHO05D006216 6.9e-09 63.9 88 43.2
Ciclev10003573m.g Citrus clementina HOM05D000786 ORTHO05D006216 9.0e-09 63.5 87 42.5
Dinv41045 Davidia involucrata HOM05D000786 ORTHO05D006216 9.0e-09 63.5 83 42.2
Glyma.02G079500 Glycine max HOM05D000786 ORTHO05D006216 1.5e-08 62.8 81 43.2
Migut.N03203 Erythranthe guttata HOM05D000786 ORTHO05D006216 2.6e-08 62.0 85 44.7
PSO541G3255 Papaver somniferum HOM05D000786 ORTHO05D006216 4.4e-08 61.2 98 39.8
VMungo0720G1602 Vigna mungo HOM05D000786 ORTHO05D006216 4.4e-08 61.2 67 49.3
CDE04G0685 Ceratophyllum demersum HOM05D000786 ORTHO05D006216 5.8e-08 60.8 89 43.8
HPP92_027891 Vanilla planifolia HOM05D000786 ORTHO05D006216 5.8e-08 60.8 86 46.5
Os06g0686600 Oryza sativa ssp. japonica HOM05D000786 ORTHO05D006216 7.6e-08 60.5 93 38.7
Lj1g0021494 Lotus japonicus HOM05D000786 ORTHO05D000779 9.9e-08 60.1 58 50.0
HPP92_018298 Vanilla planifolia HOM05D000786 ORTHO05D006216 1.3e-07 59.7 86 46.5
CsaV3_4G035780 Cucumis sativus L. HOM05D000786 ORTHO05D000779 2.2e-07 58.9 77 41.6
Dinv19455 Davidia involucrata HOM05D000786 ORTHO05D006216 2.2e-07 58.9 67 52.2
ECA232G3182 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.9e-07 58.5 60 53.3
AUR62044756 Chenopodium quinoa HOM05D000786 ORTHO05D006216 3.8e-07 58.2 84 41.7
MBI19_g15944_MAGBIO Magnolia biondii HOM05D000786 ORTHO05D006216 3.8e-07 58.2 85 43.5
CSS0019123 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D000779 4.9e-07 57.8 38 65.8
CiPaw.04G089000 Carya illinoinensis HOM05D000786 ORTHO05D006216 6.4e-07 57.4 68 51.5
AUR62034855 Chenopodium quinoa HOM05D000786 ORTHO05D006216 6.4e-07 57.4 84 40.5
Dinv02076 Davidia involucrata HOM05D000786 ORTHO05D000779 6.4e-07 57.4 49 55.1
Ca_15820_v3 Cicer arietinum L. HOM05D000786 ORTHO05D000779 8.4e-07 57.0 75 42.7
Ca_15854_v3 Cicer arietinum L. HOM05D000786 ORTHO05D000779 8.4e-07 57.0 75 42.7
Glyma.04G052800 Glycine max HOM05D000786 ORTHO05D000779 8.4e-07 57.0 80 41.2
Glyma.06G053300 Glycine max HOM05D000786 ORTHO05D000779 8.4e-07 57.0 80 38.8
Nitab4.5_0005070g0010 Nicotiana tabacum HOM05D000786 ORTHO05D006216 8.4e-07 57.0 89 38.2
Sed0000205 Sechium edule HOM05D000786 ORTHO05D006216 8.4e-07 57.0 90 37.8
A10p25790 Brassica napus HOM05D000786 ORTHO05D000779 1.1e-06 56.6 74 40.5
Lj2g0013103 Lotus japonicus HOM05D000786 ORTHO05D006216 1.1e-06 56.6 82 43.9
Lalb_Chr08g0244991 Lupinus albus HOM05D000786 ORTHO05D000779 1.1e-06 56.6 76 39.5
Phvul.009G079000 Phaseolus vulgaris HOM05D000786 ORTHO05D000779 1.1e-06 56.6 78 42.3
Zm00001eb225670 Zea mays HOM05D000786 ORTHO05D006216 1.1e-06 56.6 92 38.0
ClCG05G018000 Citrullus lanatus HOM05D000786 ORTHO05D000779 1.4e-06 56.2 79 38.0
Nitab4.5_0000099g0130 Nicotiana tabacum HOM05D000786 ORTHO05D006216 2.4e-06 55.5 89 38.2
Psat5g036120 Pisum sativum HOM05D000786 ORTHO05D000779 2.4e-06 55.5 81 40.7
SMO172G0046 Selaginella moellendorffii HOM05D000786 ORTHO05D000779 2.4e-06 55.5 69 42.0
AT5G11970 Arabidopsis thaliana HOM05D000786 ORTHO05D000779 3.2e-06 55.1 74 40.5
C09p64860 Brassica napus HOM05D000786 ORTHO05D000779 3.2e-06 55.1 74 39.2
Medtr3g104640 Medicago truncatula HOM05D000786 ORTHO05D000779 3.2e-06 55.1 58 48.3
Prupe.1G409100 Prunus persica HOM05D000786 ORTHO05D000779 3.2e-06 55.1 81 38.3
Rhsim04G0232400 Rhododendron simsii HOM05D000786 ORTHO05D000779 3.2e-06 55.1 38 60.5
Actinidia31889 Actinidia chinensis HOM05D000786 ORTHO05D006216 4.2e-06 54.7 61 49.2
BcaB05g24772 Brassica carinata HOM05D000786 ORTHO05D000779 4.2e-06 54.7 86 40.7
Duzib150G0305 Durio zibethinus HOM05D000786 ORTHO05D000779 4.2e-06 54.7 57 45.6
THA.LOC104811234 Tarenaya hassleriana HOM05D000786 ORTHO05D000779 4.2e-06 54.7 81 38.3
TPR.G3521 Trifolium pratense HOM05D000786 ORTHO05D000779 4.2e-06 54.7 58 48.3
AL6G22750 Arabidopsis lyrata HOM05D000786 ORTHO05D000779 5.4e-06 54.3 74 40.5
BcaB03g14386 Brassica carinata HOM05D000786 ORTHO05D000779 5.4e-06 54.3 71 42.3
C07p23940 Brassica napus HOM05D000786 ORTHO05D000779 5.4e-06 54.3 71 42.3
BolC7t42919H Brassica oleracea HOM05D000786 ORTHO05D000779 5.4e-06 54.3 71 42.3
Nitab4.5_0004121g0030 Nicotiana tabacum HOM05D000786 ORTHO05D006216 5.4e-06 54.3 60 51.7
Peaxi162Scf00569g00525 Petunia axillaris HOM05D000786 ORTHO05D006216 5.4e-06 54.3 61 52.5
Actinidia15584 Actinidia chinensis HOM05D001250 ORTHO05D000627 7.1e-06 53.9 38 60.5
Ah.08g216500 Amaranthus hybridus HOM05D000786 ORTHO05D000779 7.1e-06 53.9 37 62.2
Aqoxy2G02520 Aquilegia oxysepala HOM05D000786 ORTHO05D000779 7.1e-06 53.9 45 53.3
AL4G47040 Arabidopsis lyrata HOM05D000786 ORTHO05D000779 7.1e-06 53.9 39 53.8
Lalb_Chr19g0130081 Lupinus albus HOM05D000786 ORTHO05D006216 7.1e-06 53.9 84 41.7
Manes.09G040902 Manihot esculenta HOM05D000786 ORTHO05D000779 7.1e-06 53.9 80 42.5
Sed0026180 Sechium edule HOM05D000786 ORTHO05D000779 7.1e-06 53.9 76 38.2
Atru.chr1.3791 Acer truncatum HOM05D000786 ORTHO05D000779 9.3e-06 53.5 67 44.8
BcaB08g34861 Brassica carinata HOM05D000786 ORTHO05D000779 9.3e-06 53.5 69 43.5
A07p16280 Brassica napus HOM05D000786 ORTHO05D000779 9.3e-06 53.5 71 42.3
ClCG08G010030 Citrullus lanatus HOM05D000786 ORTHO05D000779 9.3e-06 53.5 83 38.6
Medtr1g015810 Medicago truncatula HOM05D000786 ORTHO05D000779 9.3e-06 53.5 42 54.8
VMungo1309G1255 Vigna mungo HOM05D000786 ORTHO05D000779 9.3e-06 53.5 78 41.0


User provided reference genes

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