Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007446.2 Cucumis melo HOM05D007365 ORTHO05D009309 1.2e-71 273.5 177 100.0
CsaV3_6G048350 Cucumis sativus L. HOM05D007365 ORTHO05D009309 1.0e-67 260.4 177 85.9
ClCG01G021340 Citrullus lanatus HOM05D007365 ORTHO05D009309 4.0e-64 248.4 177 78.0
Sed0008513 Sechium edule HOM05D007365 ORTHO05D009309 1.5e-55 219.9 181 67.4
GSVIVG01003482001 Vitis vinifera HOM05D007365 ORTHO05D009309 3.0e-43 179.1 122 73.0
GSVIVG01004669001 Vitis vinifera HOM05D007365 ORTHO05D009309 6.6e-43 177.9 122 72.1
Duzib235G0282 Durio zibethinus HOM05D007365 ORTHO05D009309 6.2e-41 171.4 115 73.9
Thecc.06G237900 Theobroma cacao HOM05D007365 ORTHO05D009309 1.1e-40 170.6 110 75.5
QL05p068234 Quercus lobata HOM05D007365 ORTHO05D009309 2.4e-40 169.5 115 70.4
Cfa000056 Carpinus fangiana HOM05D007365 ORTHO05D009309 3.1e-40 169.1 120 68.3
Haze_06998 Corylus avellana HOM05D007365 ORTHO05D009309 3.1e-40 169.1 116 70.7
TPR.G5966 Trifolium pratense HOM05D007365 ORTHO05D009309 4.0e-40 168.7 107 77.6
CANSAT56G0830 Cannabis sativa HOM05D007365 ORTHO05D009309 5.3e-40 168.3 108 76.9
MSTRG.7141 Avicennia marina HOM05D007365 ORTHO05D009309 6.9e-40 167.9 111 73.9
Ciclev10016816m.g Citrus clementina HOM05D007365 ORTHO05D009309 1.2e-39 167.2 116 71.6
PGR004G1025 Punica granatum HOM05D007365 ORTHO05D009309 5.8e-39 164.9 115 73.0
TAR629G1651 Trochodendron aralioides HOM05D007365 ORTHO05D009309 7.6e-39 164.5 126 63.5
Gohir.A06G155600 Gossypium hirsutum HOM05D007365 ORTHO05D009309 1.7e-38 163.3 115 68.7
Gohir.D06G162000 Gossypium hirsutum HOM05D007365 ORTHO05D009309 1.7e-38 163.3 115 68.7
Gorai.010G189000 Gossypium raimondii HOM05D007365 ORTHO05D009309 1.7e-38 163.3 115 68.7
Psat4g002120 Pisum sativum HOM05D007365 ORTHO05D009309 2.9e-38 162.5 113 69.0
Potri.006G017500 Populus trichocarpa HOM05D007365 ORTHO05D009309 2.9e-38 162.5 108 73.1
Nn1g07480 Nelumbo nucifera HOM05D007365 ORTHO05D009309 3.8e-38 162.2 123 63.4
TWI63G0678 Tripterygium wilfordii HOM05D007365 ORTHO05D009309 3.8e-38 162.2 116 69.8
Manes.08G070500 Manihot esculenta HOM05D007365 ORTHO05D009309 4.9e-38 161.8 109 74.3
PSO017G7035 Papaver somniferum HOM05D007365 ORTHO05D009309 8.4e-38 161.0 127 62.2
Atru.chr1.2317 Acer truncatum HOM05D007365 ORTHO05D009309 1.1e-37 160.6 108 75.0
Oeu057031.1 Olea europaea HOM05D007365 ORTHO05D009309 2.4e-37 159.5 108 70.4
RcHm_v2.0_Chr5g0000731 Rosa chinensis HOM05D007365 ORTHO05D009309 2.4e-37 159.5 109 73.4
SGA_v2.0_scaffold7G03712 Striga asiatica HOM05D007365 ORTHO05D009309 2.4e-37 159.5 108 71.3
FAN21G3283 Fragaria x ananassa HOM05D007365 ORTHO05D009309 3.2e-37 159.1 109 72.5
Rhsim13G0142400 Rhododendron simsii HOM05D007365 ORTHO05D009309 3.2e-37 159.1 111 67.6
Sabra06G0012500 Salix brachista HOM05D007365 ORTHO05D009309 3.2e-37 159.1 111 69.4
PSO170G2578 Papaver somniferum HOM05D007365 ORTHO05D009309 4.2e-37 158.7 127 61.4
FAN25G1820 Fragaria x ananassa HOM05D007365 ORTHO05D009309 7.1e-37 157.9 118 66.1
Sc05g0009760 Simmondsia chinensis HOM05D007365 ORTHO05D009309 7.1e-37 157.9 122 66.4
FvH4_3g00530 Fragaria vesca HOM05D007365 ORTHO05D009309 9.3e-37 157.5 109 72.5
THA.LOC104814483 Tarenaya hassleriana HOM05D007365 ORTHO05D009309 1.6e-36 156.8 118 62.7
Prupe.4G006400 Prunus persica HOM05D007365 ORTHO05D009309 2.1e-36 156.4 111 69.4
Lj2P258T31 Lonicera japonica HOM05D007365 ORTHO05D009309 2.7e-36 156.0 129 58.1
unitig_37.g12181 Utricularia gibba HOM05D007365 ORTHO05D009309 2.7e-36 156.0 114 66.7
CAN.G1156.8 Capsicum annuum HOM05D007365 ORTHO05D009309 4.6e-36 155.2 108 67.6
Cc09_g00550 Coffea canephora HOM05D007365 ORTHO05D009309 7.9e-36 154.5 119 64.7
MD00G1057700 Malus domestica HOM05D007365 ORTHO05D009309 1.0e-35 154.1 115 67.8
Nitab4.5_0001668g0010 Nicotiana tabacum HOM05D007365 ORTHO05D009309 1.3e-35 153.7 109 68.8
Hma1.2p1_0657F.1_g196870 Hydrangea macrophylla HOM05D007365 ORTHO05D009309 1.7e-35 153.3 121 62.8
Hma1.2p1_1963F.1_g309285 Hydrangea macrophylla HOM05D007365 ORTHO05D009309 1.7e-35 153.3 121 62.8
Ca_21002_v3 Cicer arietinum L. HOM05D007365 ORTHO05D009309 6.6e-35 151.4 100 75.0
Medtr4g133770 Medicago truncatula HOM05D007365 ORTHO05D009309 6.6e-35 151.4 134 59.7
Eucgr.D01445 Eucalyptus grandis HOM05D007365 ORTHO05D009309 8.7e-35 151.0 112 68.8
Eucgr.D01449 Eucalyptus grandis HOM05D007365 ORTHO05D009309 8.7e-35 151.0 110 69.1
Eucgr.L00170 Eucalyptus grandis HOM05D007365 ORTHO05D009309 8.7e-35 151.0 112 68.8
Sopen11g007370 Solanum pennellii HOM05D007365 ORTHO05D009309 8.7e-35 151.0 110 66.4
CSS0050100 Camellia sinensis var. sinensis HOM05D007365 ORTHO05D009309 1.5e-34 150.2 113 65.5
Lalb_Chr07g0176961 Lupinus albus HOM05D007365 ORTHO05D009309 1.5e-34 150.2 105 74.3
Solyc11g012640.1 Solanum lycopersicum HOM05D007365 ORTHO05D009309 1.5e-34 150.2 110 66.4
PGSC0003DMG400013294 Solanum tuberosum HOM05D007365 ORTHO05D009309 2.5e-34 149.4 110 66.4
Lj4g0011771 Lotus japonicus HOM05D007365 ORTHO05D009309 7.3e-34 147.9 107 68.2
VMungo1215G0355 Vigna mungo HOM05D007365 ORTHO05D009309 9.6e-34 147.5 108 66.7
Phvul.003G085500 Phaseolus vulgaris HOM05D007365 ORTHO05D009309 1.6e-33 146.7 108 66.7
Migut.M01433 Erythranthe guttata HOM05D007365 ORTHO05D009309 2.1e-33 146.4 114 61.4
MBI19_g37436_MAGBIO Magnolia biondii HOM05D007365 ORTHO05D009309 2.1e-33 146.4 123 58.5
ATR0624G051 Amborella trichopoda HOM05D007365 ORTHO05D009309 6.2e-33 144.8 111 60.4
Carub.0007s2512 Capsella rubella HOM05D007365 ORTHO05D009309 6.2e-33 144.8 108 64.8
Glyma.17G007100 Glycine max HOM05D007365 ORTHO05D009309 6.2e-33 144.8 108 66.7
Sp7g14940 Schrenkiella parvula HOM05D007365 ORTHO05D009309 6.2e-33 144.8 108 64.8
AT4G16410 Arabidopsis thaliana HOM05D007365 ORTHO05D009309 8.1e-33 144.4 108 63.9
Cpa.g.sc1092.2 Carica papaya HOM05D007365 ORTHO05D009309 8.1e-33 144.4 126 56.3
AL7G38600 Arabidopsis lyrata HOM05D007365 ORTHO05D009309 1.4e-32 143.7 108 64.8
Aqoxy1G04233 Aquilegia oxysepala HOM05D007365 ORTHO05D009309 1.8e-32 143.3 121 58.7
Thhalv10026910m.g Eutrema salsugineum HOM05D007365 ORTHO05D009309 1.8e-32 143.3 108 63.9
Dinv15365 Davidia involucrata HOM05D007365 ORTHO05D009309 2.4e-32 142.9 97 71.1
Ah.14g087440 Amaranthus hybridus HOM05D007365 ORTHO05D009309 5.3e-32 141.7 109 64.2
CARHR222780 Cardamine hirsuta HOM05D007365 ORTHO05D009309 6.9e-32 141.4 108 63.0
TAR629G0160 Trochodendron aralioides HOM05D007365 ORTHO05D009309 6.9e-32 141.4 94 72.3
A03p49790 Brassica napus HOM05D007365 ORTHO05D009309 2.6e-31 139.4 108 64.8
BraA03t14074Z Brassica rapa HOM05D007365 ORTHO05D009309 2.6e-31 139.4 108 64.8
C07p47850 Brassica napus HOM05D007365 ORTHO05D009309 4.5e-31 138.7 108 63.9
HanXRQChr10g0285121 Helianthus annuus HOM05D007365 ORTHO05D009309 4.5e-31 138.7 109 60.6
BolC7t45307H Brassica oleracea HOM05D007365 ORTHO05D009309 7.6e-31 137.9 105 64.8
CiPaw.09G107000 Carya illinoinensis HOM05D007365 ORTHO05D009309 9.9e-31 137.5 95 69.5
HPP92_007730 Vanilla planifolia HOM05D007365 ORTHO05D009309 1.3e-30 137.1 108 60.2
Hma1.2p1_0657F.1_g196860 Hydrangea macrophylla HOM05D007365 ORTHO05D009309 2.9e-30 136.0 108 63.0
EL10Ac8g20243 Beta vulgaris HOM05D007365 ORTHO05D009309 6.4e-30 134.8 105 66.7
CDE02G4560 Ceratophyllum demersum HOM05D007365 ORTHO05D009309 5.4e-29 131.7 97 67.0
ECA248G3442 Erigeron canadensis HOM05D000864 ORTHO05D002353 9.3e-29 131.0 108 57.4
DCAR_030849 Daucus carota HOM05D007365 ORTHO05D009309 1.2e-28 130.6 95 65.3
BraA01t02028Z Brassica rapa HOM05D007365 ORTHO05D009309 4.6e-28 128.6 96 64.6
Glyma.07G267200 Glycine max HOM05D007365 ORTHO05D009309 5.1e-27 125.2 95 67.4
Lsat_1_v5_gn_1_129921 Lactuca sativa HOM05D007365 ORTHO05D009309 4.3e-26 122.1 97 59.8
Zm00001eb380530 Zea mays HOM05D007365 ORTHO05D009309 7.4e-26 121.3 102 59.8
Zm00001eb280810 Zea mays HOM05D007365 ORTHO05D009309 2.1e-25 119.8 102 57.8
SEGI_39039 Sequoiadendron giganteum HOM05D007365 ORTHO05D009309 1.2e-23 114.0 109 49.5
MELO3C035474.2 Cucumis melo HOM05D007365 ORTHO05D009309 3.4e-23 112.5 103 67.0
Peaxi162Scf00008g00111 Petunia axillaris HOM05D007365 ORTHO05D009309 3.2e-21 105.9 72 70.8
Mapoly0009s0214 Marchantia polymorpha HOM05D007365 ORTHO05D009309 4.2e-21 105.5 83 54.2
BcaNung00199 Brassica carinata HOM05D007365 ORTHO05D009309 7.1e-21 104.8 83 62.7
C01p26480 Brassica napus HOM05D002647 ORTHO05D032546 9.3e-21 104.4 100 54.0
Pp3c8_24380 Physcomitrium patens HOM05D007365 ORTHO05D009309 1.6e-20 103.6 115 47.0
Os07g0607200 Oryza sativa ssp. japonica HOM05D007365 ORTHO05D009309 2.1e-20 103.2 107 50.5
Aa31LG2G12470 Aethionema arabicum HOM05D002647 ORTHO05D000003 2.7e-20 102.8 88 58.0
BcaC09g50340 Brassica carinata HOM05D007365 ORTHO05D009309 3.9e-19 99.0 88 56.8
CBR_g31098 Chara braunii HOM05D000019 ORTHO05D000048 6.2e-17 91.7 90 50.0
CsaV3_2G014000 Cucumis sativus L. HOM05D007365 ORTHO05D009309 5.3e-16 88.6 63 74.6
MD10G1337000 Malus domestica HOM05D007365 ORTHO05D009309 6.9e-16 88.2 61 65.6
Actinidia02294 Actinidia chinensis HOM05D007365 ORTHO05D009309 2.9e-14 82.8 98 46.9
A01p21190 Brassica napus HOM05D007365 ORTHO05D009309 1.8e-08 63.5 115 40.0


User provided reference genes

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