Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007420.2 Cucumis melo HOM05D004496 ORTHO05D005513 1.3e-159 566.6 351 100.0
CsaV3_6G048690 Cucumis sativus L. HOM05D004496 ORTHO05D005513 3.6e-125 452.2 323 84.2
ClCG01G021640 Citrullus lanatus HOM05D004496 ORTHO05D005513 2.0e-123 446.4 325 80.0
Sed0021394 Sechium edule HOM05D004496 ORTHO05D005513 3.7e-77 292.7 324 57.7
Sed0016463 Sechium edule HOM05D004496 ORTHO05D005513 2.2e-69 266.9 276 64.5
Dinv20109 Davidia involucrata HOM05D004496 ORTHO05D005950 2.0e-67 260.4 284 59.2
Dinv13941 Davidia involucrata HOM05D004496 ORTHO05D005513 2.0e-62 243.8 292 55.8
TAR627G0164 Trochodendron aralioides HOM05D004496 ORTHO05D005513 2.0e-62 243.8 326 55.5
TAR627G0966 Trochodendron aralioides HOM05D004496 ORTHO05D005513 3.3e-62 243.0 326 55.5
Ciclev10015792m.g Citrus clementina HOM05D004496 ORTHO05D005513 7.4e-62 241.9 336 48.8
Nitab4.5_0006125g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 2.2e-61 240.4 350 50.0
CiPaw.09G098400 Carya illinoinensis HOM05D004496 ORTHO05D005513 6.3e-61 238.8 340 51.8
CiPaw.10G074800 Carya illinoinensis HOM05D004496 ORTHO05D005513 6.9e-60 235.3 331 53.8
Nn1g03388 Nelumbo nucifera HOM05D004496 ORTHO05D005513 6.9e-60 235.3 330 52.1
MD10G1327300 Malus domestica HOM05D004496 ORTHO05D005513 9.1e-60 235.0 347 53.3
Prupe.4G014700 Prunus persica HOM05D004496 ORTHO05D005513 2.0e-59 233.8 337 56.4
Psat1g175480 Pisum sativum HOM05D004496 ORTHO05D005513 2.9e-58 229.9 325 51.4
FAN25G1366 Fragaria x ananassa HOM05D004496 ORTHO05D005513 1.4e-57 227.6 327 53.5
Phvul.006G145400 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 1.4e-57 227.6 336 53.3
Gohir.D05G176300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.9e-57 227.3 358 48.6
Gohir.A05G173300 Gossypium hirsutum HOM05D004496 ORTHO05D005513 9.4e-57 224.9 358 50.3
Thecc.06G228600 Theobroma cacao HOM05D004496 ORTHO05D005513 9.4e-57 224.9 330 51.8
Glyma.15G112200 Glycine max HOM05D004496 ORTHO05D005513 1.6e-56 224.2 342 52.3
Ca_00696_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 4.7e-56 222.6 331 52.6
PGSC0003DMG400016725 Solanum tuberosum HOM05D004496 ORTHO05D005513 4.7e-56 222.6 343 49.0
TAR624G0763 Trochodendron aralioides HOM05D001218 ORTHO05D003142 4.7e-56 222.6 327 51.7
Nitab4.5_0009517g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 7.9e-56 221.9 355 49.0
Duzib192G0344 Durio zibethinus HOM05D004496 ORTHO05D005513 1.0e-55 221.5 325 50.5
Nn1g07279 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.0e-55 221.5 348 49.7
Lalb_Chr18g0056781 Lupinus albus HOM05D004496 ORTHO05D005513 1.4e-55 221.1 324 55.9
Glyma.09G007852 Glycine max HOM05D004496 ORTHO05D005513 5.1e-55 219.2 318 53.5
Solyc02g081150.1 Solanum lycopersicum HOM05D004496 ORTHO05D005513 5.1e-55 219.2 347 48.4
Sopen02g025790 Solanum pennellii HOM05D004496 ORTHO05D005513 6.7e-55 218.8 341 49.6
Lj6g0013804 Lotus japonicus HOM05D004496 ORTHO05D005513 1.5e-54 217.6 329 50.5
Duzib235G0420 Durio zibethinus HOM05D004496 ORTHO05D005513 5.7e-54 215.7 355 47.3
TWI38G0464 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 5.7e-54 215.7 336 50.3
Phvul.003G081900 Phaseolus vulgaris HOM05D004496 ORTHO05D005513 9.7e-54 214.9 317 47.6
Sabra11G0010200 Salix brachista HOM05D004496 ORTHO05D005513 9.7e-54 214.9 338 51.2
Sabra11G0008600 Salix brachista HOM05D004496 ORTHO05D005513 1.3e-53 214.5 338 50.3
CANSAT56G2524 Cannabis sativa HOM05D004496 ORTHO05D005513 3.7e-53 213.0 363 47.9
CAN.G1014.49 Capsicum annuum HOM05D004496 ORTHO05D005513 3.7e-53 213.0 320 48.4
Sabra11G0011700 Salix brachista HOM05D004496 ORTHO05D005513 1.8e-52 210.7 338 52.1
FvH4_3g01370 Fragaria vesca HOM05D004496 ORTHO05D005513 4.1e-52 209.5 338 52.1
Sabra04G0002100 Salix brachista HOM05D004496 ORTHO05D005513 2.0e-51 207.2 337 48.7
MSTRG.13128 Avicennia marina HOM05D004496 ORTHO05D005513 3.5e-51 206.5 348 43.4
MD05G1352700 Malus domestica HOM05D004496 ORTHO05D005513 1.0e-50 204.9 342 53.8
VMungo1215G0904 Vigna mungo HOM05D004496 ORTHO05D005513 1.3e-50 204.5 317 46.4
Lalb_Chr15g0087811 Lupinus albus HOM05D004496 ORTHO05D005513 1.7e-50 204.1 328 47.3
Potri.004G003900 Populus trichocarpa HOM05D004496 ORTHO05D005513 3.8e-50 203.0 342 49.7
Medtr2g024980 Medicago truncatula HOM05D004496 ORTHO05D005513 5.0e-50 202.6 338 49.4
Lj2P264T22 Lonicera japonica HOM05D004496 ORTHO05D005513 6.5e-50 202.2 330 44.2
TWI38G0680 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 6.5e-50 202.2 350 49.7
Potri.011G015500 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.1e-49 201.4 334 50.3
Migut.M01368 Erythranthe guttata HOM05D004496 ORTHO05D005513 1.9e-49 200.7 330 44.5
Hma1.2p1_0298F.1_g117440 Hydrangea macrophylla HOM05D004496 ORTHO05D005513 4.2e-49 199.5 343 48.1
Gorai.009G181700 Gossypium raimondii HOM05D004496 ORTHO05D005513 4.7e-48 196.1 303 52.1
Atru.chr10.2286 Acer truncatum HOM05D004496 ORTHO05D005513 6.1e-48 195.7 287 55.1
Haze_06861 Corylus avellana HOM05D004496 ORTHO05D005513 8.0e-48 195.3 339 49.3
MSTRG.7183 Avicennia marina HOM05D004496 ORTHO05D005513 2.3e-47 193.7 352 42.6
Rhsim13G0149900 Rhododendron simsii HOM05D004496 ORTHO05D005513 2.3e-47 193.7 332 51.8
Glyma.07G263700 Glycine max HOM05D004496 ORTHO05D005513 8.8e-47 191.8 323 47.1
TAR626G0621 Trochodendron aralioides HOM05D004496 ORTHO05D005513 2.0e-46 190.7 319 48.0
RcHm_v2.0_Chr5g0001991 Rosa chinensis HOM05D004496 ORTHO05D005513 2.6e-46 190.3 329 51.7
arahy.Tifrunner.gnm1.ann1.SI7QTZ Arachis hypogaea HOM05D004496 ORTHO05D005513 3.3e-46 189.9 330 47.3
SalBow8G1688 Salvia bowleyana HOM05D004496 ORTHO05D005513 1.7e-45 187.6 318 42.1
QL05p071740 Quercus lobata HOM05D004496 ORTHO05D005513 2.8e-45 186.8 327 52.0
GSVIVG01004818001 Vitis vinifera HOM05D004496 ORTHO05D005513 2.8e-45 186.8 215 53.0
CSS0046352 Camellia sinensis var. sinensis HOM05D004496 ORTHO05D005513 3.7e-45 186.4 328 49.1
Nitab4.5_0005882g0010 Nicotiana tabacum HOM05D004496 ORTHO05D005513 4.8e-45 186.0 325 45.2
arahy.Tifrunner.gnm1.ann1.EH65IB Arachis hypogaea HOM05D004496 ORTHO05D005513 6.3e-45 185.7 330 47.0
Cfa000158 Carpinus fangiana HOM05D004496 ORTHO05D005513 6.3e-45 185.7 341 48.7
THA.LOC104812981 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 6.3e-45 185.7 353 45.6
Nitab4.5_0000005g0040 Nicotiana tabacum HOM05D004496 ORTHO05D005513 1.1e-44 184.9 323 44.9
Potri.006G270100 Populus trichocarpa HOM05D004496 ORTHO05D005513 1.4e-44 184.5 282 50.4
vmacro03662 Vaccinium macrocarpon HOM05D004496 ORTHO05D005513 2.4e-44 183.7 336 48.8
Cpa.g.sc3209.1 Carica papaya HOM05D004496 ORTHO05D005513 5.3e-44 182.6 337 48.7
Migut.H01591 Erythranthe guttata HOM05D004496 ORTHO05D005513 5.3e-44 182.6 336 46.1
Thhalv10028862m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 1.2e-43 181.4 325 41.5
Manes.16G002700 Manihot esculenta HOM05D004496 ORTHO05D005513 1.2e-43 181.4 332 45.8
Thhalv10025698m.g Eutrema salsugineum HOM05D004496 ORTHO05D005513 3.5e-43 179.9 330 45.8
Manes.17G027100 Manihot esculenta HOM05D004496 ORTHO05D005513 5.9e-43 179.1 307 50.8
BraA01t01298Z Brassica rapa HOM05D004496 ORTHO05D005513 7.7e-43 178.7 337 45.7
A01p13560 Brassica napus HOM05D004496 ORTHO05D005513 1.0e-42 178.3 337 45.7
BcaNung01704 Brassica carinata HOM05D004496 ORTHO05D005513 2.2e-42 177.2 326 45.7
Aqoxy1G03511 Aquilegia oxysepala HOM05D004496 ORTHO05D005513 2.9e-42 176.8 343 43.4
Sp7g20330 Schrenkiella parvula HOM05D004496 ORTHO05D005513 2.9e-42 176.8 334 45.2
TWI63G1509 Tripterygium wilfordii HOM05D004496 ORTHO05D005513 3.8e-42 176.4 346 47.4
BcaC09g51153 Brassica carinata HOM05D004496 ORTHO05D005513 5.0e-42 176.0 339 45.7
C01p16430 Brassica napus HOM05D004496 ORTHO05D005513 5.0e-42 176.0 339 45.7
BolC1t01593H Brassica oleracea HOM05D004496 ORTHO05D005513 5.0e-42 176.0 339 45.7
BcaNung03756 Brassica carinata HOM05D004496 ORTHO05D005513 8.5e-42 175.3 331 44.7
Peaxi162Scf00708g00013 Petunia axillaris HOM05D004496 ORTHO05D005513 8.5e-42 175.3 326 47.9
Actinidia26886 Actinidia chinensis HOM05D004496 ORTHO05D005513 1.5e-41 174.5 332 46.1
THA.LOC104806318 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 2.5e-41 173.7 348 45.7
PSO210G3984 Papaver somniferum HOM05D004496 ORTHO05D005513 3.2e-41 173.3 390 43.6
Carub.0007s1912 Capsella rubella HOM05D004496 ORTHO05D005513 4.2e-41 172.9 329 44.7
A03p53360 Brassica napus HOM05D004496 ORTHO05D005513 5.5e-41 172.6 327 46.8
Aa31LG6G4310 Aethionema arabicum HOM05D004496 ORTHO05D005513 7.2e-41 172.2 342 45.0
CDE04G1983 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 2.1e-40 170.6 319 40.1
Lsat_1_v5_gn_7_14880 Lactuca sativa HOM05D004496 ORTHO05D005513 2.7e-40 170.2 324 45.1
Actinidia02342 Actinidia chinensis HOM05D004496 ORTHO05D005513 1.8e-39 167.5 332 44.0
Lj4g0028181 Lotus japonicus HOM05D004496 ORTHO05D005513 2.3e-39 167.2 323 50.8
C07p51660 Brassica napus HOM05D004496 ORTHO05D005513 3.0e-39 166.8 331 44.1
PGR042G2934 Punica granatum HOM05D004496 ORTHO05D005513 3.0e-39 166.8 355 43.1
BcaNung00807 Brassica carinata HOM05D004496 ORTHO05D005513 1.2e-38 164.9 331 46.2
AL7G31460 Arabidopsis lyrata HOM05D004496 ORTHO05D005513 1.5e-38 164.5 338 45.6
Gohir.D06G157600 Gossypium hirsutum HOM05D004496 ORTHO05D005513 3.4e-38 163.3 316 43.7
Gorai.010G184200 Gossypium raimondii HOM05D004496 ORTHO05D005513 4.4e-38 162.9 316 43.7
MBI19_g19808_MAGBIO Magnolia biondii HOM05D004496 ORTHO05D005513 4.4e-38 162.9 352 40.6
CARHR229080 Cardamine hirsuta HOM05D004496 ORTHO05D005513 9.8e-38 161.8 342 42.7
PSO832G0430 Papaver somniferum HOM05D004496 ORTHO05D005513 2.2e-37 160.6 403 42.9
Sc17g0007590 Simmondsia chinensis HOM05D004496 ORTHO05D005513 3.5e-35 153.3 327 46.2
Oeu007154.1 Olea europaea HOM05D004496 ORTHO05D005513 5.9e-35 152.5 272 46.7
AT4G22190 Arabidopsis thaliana HOM05D004496 ORTHO05D005513 1.3e-34 151.4 289 49.8
DCAR_002205 Daucus carota HOM05D004496 ORTHO05D005513 1.3e-34 151.4 342 38.6
THA.LOC104813445 Tarenaya hassleriana HOM05D004496 ORTHO05D005513 6.5e-34 149.1 335 41.5
Potri.006G282500 Populus trichocarpa HOM05D004496 ORTHO05D005513 8.5e-34 148.7 335 44.5
Lsat_1_v5_gn_4_61701 Lactuca sativa HOM05D004496 ORTHO05D005513 7.2e-33 145.6 326 41.4
PGR004G2243 Punica granatum HOM05D004496 ORTHO05D005513 7.2e-33 145.6 354 42.4
Nn1g01506 Nelumbo nucifera HOM05D004496 ORTHO05D005513 2.7e-32 143.7 152 53.3
Peaxi162Scf00294g00097 Petunia axillaris HOM05D004496 ORTHO05D005513 3.6e-32 143.3 278 42.4
Potri.006G282000 Populus trichocarpa HOM05D004496 ORTHO05D005513 6.1e-32 142.5 338 43.5
Aa31LG9G9910 Aethionema arabicum HOM05D004496 ORTHO05D005950 2.3e-31 140.6 200 46.0
Ah.09g234500 Amaranthus hybridus HOM05D004496 ORTHO05D005950 2.3e-31 140.6 273 44.0
Medtr4g132690 Medicago truncatula HOM05D004496 ORTHO05D005513 3.0e-31 140.2 263 49.4
HanXRQChr15g0470781 Helianthus annuus HOM05D004496 ORTHO05D005513 1.2e-30 138.3 321 45.8
SGA_v2.0_scaffold89G27486 Striga asiatica HOM05D004496 ORTHO05D005513 2.0e-30 137.5 357 43.1
BcaNung03755 Brassica carinata HOM05D004496 ORTHO05D005513 4.4e-30 136.3 259 45.2
Oeu003154.1 Olea europaea HOM05D004496 ORTHO05D005513 5.7e-30 136.0 300 39.3
EL10Ac8g20132 Beta vulgaris HOM05D004496 ORTHO05D005513 7.5e-30 135.6 272 40.4
HPP92_023384 Vanilla planifolia HOM05D004496 ORTHO05D005513 2.8e-29 133.7 335 38.8
COL.COLO4_31834 Corchorus olitorius HOM05D004496 ORTHO05D005513 6.3e-29 132.5 171 48.5
Sp6g04650 Schrenkiella parvula HOM05D004496 ORTHO05D005513 3.1e-28 130.2 324 38.9
Nn2g15240 Nelumbo nucifera HOM05D004496 ORTHO05D005513 7.0e-28 129.0 261 42.9
Psat4g004280 Pisum sativum HOM05D004496 ORTHO05D005513 9.1e-28 128.6 150 56.0
Gohir.A06G151400 Gossypium hirsutum HOM05D004496 ORTHO05D005513 1.6e-27 127.9 204 51.5
Ca_21060_v3 Cicer arietinum L. HOM05D004496 ORTHO05D005513 2.9e-26 123.6 203 49.8
TPR.G37047 Trifolium pratense HOM05D004496 ORTHO05D005513 2.5e-25 120.6 187 49.2
ECA236G1118 Erigeron canadensis HOM05D004496 ORTHO05D005513 3.3e-25 120.2 319 35.1
CDE07G1551 Ceratophyllum demersum HOM05D004496 ORTHO05D005513 5.6e-25 119.4 286 35.3
Potri.006G283300 Populus trichocarpa HOM05D004496 ORTHO05D005513 2.8e-24 117.1 327 39.8
unitig_26.g9398 Utricularia gibba HOM05D004496 ORTHO05D005513 4.0e-23 113.2 322 37.3
Nn1g06547 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.3e-21 108.2 115 52.2
ATR0059G030 Amborella trichopoda HOM05D004496 ORTHO05D005513 1.4e-20 104.8 376 35.9
Eucgr.D01366 Eucalyptus grandis HOM05D004496 ORTHO05D005513 5.4e-20 102.8 154 47.4
Lj1P1236T60 Lonicera japonica HOM05D004496 ORTHO05D005513 5.4e-20 102.8 173 41.6
BraA03t14400Z Brassica rapa HOM05D004496 ORTHO05D005513 3.5e-19 100.1 175 44.6
Nn3g21624 Nelumbo nucifera HOM05D004496 ORTHO05D005513 3.3e-17 93.6 270 38.9
unitig_749.g13622 Utricularia gibba HOM05D004496 ORTHO05D005513 4.3e-17 93.2 268 35.1
SGA_v2.0_scaffold4G01894 Striga asiatica HOM05D004496 ORTHO05D005513 2.9e-13 80.5 347 31.4
Zm00001eb169380 Zea mays HOM05D004496 ORTHO05D005513 3.5e-11 73.6 355 32.4
Zm00001eb112850 Zea mays HOM05D004496 ORTHO05D005513 4.6e-11 73.2 359 29.0
HPP92_008063 Vanilla planifolia HOM05D004496 ORTHO05D005513 2.3e-10 70.9 165 34.5
Nn2g15668 Nelumbo nucifera HOM05D004496 ORTHO05D005513 1.4e-07 61.6 92 53.3
Os11g0497350 Oryza sativa ssp. japonica HOM05D004496 ORTHO05D005513 2.3e-07 60.8 209 35.9


User provided reference genes

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