Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007416.2 Cucumis melo HOM05D004397 ORTHO05D005271 9.0e-218 760.0 389 100.0
CsaV3_6G048740 Cucumis sativus L. HOM05D004397 ORTHO05D005271 2.4e-114 416.4 328 71.3
ClCG01G021700 Citrullus lanatus HOM05D004397 ORTHO05D005271 2.4e-101 373.2 287 73.5
Sed0027185 Sechium edule HOM05D004397 ORTHO05D005271 2.0e-100 370.2 326 66.6
Sed0005973 Sechium edule HOM05D004397 ORTHO05D005271 4.9e-99 365.5 326 65.0
Thecc.06G227900 Theobroma cacao HOM05D004397 ORTHO05D005271 3.0e-96 356.3 328 64.3
CiPaw.09G097700 Carya illinoinensis HOM05D004397 ORTHO05D005271 2.5e-95 353.2 269 71.4
Gohir.D05G176000 Gossypium hirsutum HOM05D004397 ORTHO05D005271 4.3e-95 352.4 279 70.3
Gorai.009G181400 Gossypium raimondii HOM05D004397 ORTHO05D005271 5.6e-95 352.1 279 70.3
Gohir.A05G173000 Gossypium hirsutum HOM05D004397 ORTHO05D005271 2.1e-94 350.1 279 69.9
Haze_06856 Corylus avellana HOM05D004397 ORTHO05D005271 2.8e-94 349.7 285 68.8
CiPaw.10G074300 Carya illinoinensis HOM05D004397 ORTHO05D005271 3.7e-94 349.4 279 69.2
Duzib192G0217 Durio zibethinus HOM05D004397 ORTHO05D005271 3.7e-94 349.4 287 68.6
Manes.16G003100 Manihot esculenta HOM05D004397 ORTHO05D005271 8.1e-94 348.2 271 70.1
COL.COLO4_31830 Corchorus olitorius HOM05D004397 ORTHO05D005271 3.1e-93 346.3 327 61.2
MSTRG.1068 Avicennia marina HOM05D004397 ORTHO05D005271 6.9e-93 345.1 271 69.4
Solyc12g088730.2 Solanum lycopersicum HOM05D004397 ORTHO05D005271 6.9e-93 345.1 270 69.3
Hma1.2p1_0226F.1_g095780 Hydrangea macrophylla HOM05D004397 ORTHO05D005271 9.0e-93 344.7 276 68.5
Sopen12g030630 Solanum pennellii HOM05D004397 ORTHO05D005271 1.2e-92 344.4 270 69.3
Lj6g0022899 Lotus japonicus HOM05D004397 ORTHO05D005271 2.0e-92 343.6 281 66.9
HanXRQChr01g0014371 Helianthus annuus HOM05D004397 ORTHO05D005271 2.6e-92 343.2 271 69.0
Ca_00691_v3 Cicer arietinum L. HOM05D004397 ORTHO05D005271 4.5e-92 342.4 266 69.9
Dinv12378 Davidia involucrata HOM05D004397 ORTHO05D005271 4.5e-92 342.4 271 69.0
TAR629G1518 Trochodendron aralioides HOM05D004397 ORTHO05D005271 1.7e-91 340.5 271 69.4
Nitab4.5_0003508g0010 Nicotiana tabacum HOM05D004397 ORTHO05D005271 3.8e-91 339.3 280 66.8
Eucgr.G00454 Eucalyptus grandis HOM05D004397 ORTHO05D005271 6.5e-91 338.6 278 68.0
Potri.004G004800 Populus trichocarpa HOM05D004397 ORTHO05D005271 6.5e-91 338.6 269 69.1
TAR626G0623 Trochodendron aralioides HOM05D004397 ORTHO05D005271 1.1e-90 337.8 326 60.7
PGSC0003DMG400015407 Solanum tuberosum HOM05D004397 ORTHO05D005271 2.5e-90 336.7 277 67.1
CSS0021903 Camellia sinensis var. sinensis HOM05D004397 ORTHO05D005271 3.2e-90 336.3 270 68.5
Cpa.g.sc152.55 Carica papaya HOM05D004397 ORTHO05D005271 4.2e-90 335.9 289 65.4
THA.LOC104823539 Tarenaya hassleriana HOM05D004397 ORTHO05D005271 4.2e-90 335.9 271 68.3
Aa31LG8G17020 Aethionema arabicum HOM05D004397 ORTHO05D005271 5.5e-90 335.5 269 67.7
CSS0044102 Camellia sinensis var. sinensis HOM05D004397 ORTHO05D005271 5.5e-90 335.5 270 68.5
THA.LOC104809478 Tarenaya hassleriana HOM05D004397 ORTHO05D005271 9.3e-90 334.7 276 67.4
PGR004G1068 Punica granatum HOM05D004397 ORTHO05D005271 2.1e-89 333.6 271 68.6
RcHm_v2.0_Chr5g0002131 Rosa chinensis HOM05D004397 ORTHO05D005271 2.1e-89 333.6 261 68.6
Phvul.006G146000 Phaseolus vulgaris HOM05D004397 ORTHO05D005271 2.7e-89 333.2 266 69.2
QL03p004896 Quercus lobata HOM05D004397 ORTHO05D005271 2.7e-89 333.2 276 66.7
Nn1g07269 Nelumbo nucifera HOM05D004397 ORTHO05D005271 3.5e-89 332.8 271 66.8
GSVIVG01004810001 Vitis vinifera HOM05D004397 ORTHO05D005271 3.5e-89 332.8 272 69.1
Atru.chr10.2278 Acer truncatum HOM05D004397 ORTHO05D005271 4.6e-89 332.4 285 64.9
Carub.0003s3434 Capsella rubella HOM05D004397 ORTHO05D005271 4.6e-89 332.4 276 66.3
Migut.L00082 Erythranthe guttata HOM05D004397 ORTHO05D005271 1.0e-88 331.3 266 67.3
FvH4_3g01410 Fragaria vesca HOM05D004397 ORTHO05D005271 1.0e-88 331.3 261 69.0
Sp3g33370 Schrenkiella parvula HOM05D004397 ORTHO05D005271 1.3e-88 330.9 269 66.5
Phvul.010G046600 Phaseolus vulgaris HOM05D004397 ORTHO05D005271 1.8e-88 330.5 266 68.8
VMungo0540G2306 Vigna mungo HOM05D004397 ORTHO05D005271 3.0e-88 329.7 264 68.9
Thhalv10002043m.g Eutrema salsugineum HOM05D004397 ORTHO05D005271 5.1e-88 328.9 276 65.2
BcaB08g34896 Brassica carinata HOM05D004397 ORTHO05D005271 2.5e-87 326.6 276 65.9
A07p00590 Brassica napus HOM05D004397 ORTHO05D005271 2.5e-87 326.6 276 65.9
BraA07t27855Z Brassica rapa HOM05D004397 ORTHO05D005271 2.5e-87 326.6 276 65.9
AT2G20060 Arabidopsis thaliana HOM05D004397 ORTHO05D005271 4.3e-87 325.9 276 65.6
Sc16g0006660 Simmondsia chinensis HOM05D004397 ORTHO05D005271 4.3e-87 325.9 268 67.5
arahy.Tifrunner.gnm1.ann1.K9NX2S Arachis hypogaea HOM05D004397 ORTHO05D005271 5.7e-87 325.5 283 67.5
Prupe.2G035900 Prunus persica HOM05D004397 ORTHO05D005271 5.7e-87 325.5 277 66.4
BcaC06g36686 Brassica carinata HOM05D004397 ORTHO05D005271 1.3e-86 324.3 276 65.6
C07p01050 Brassica napus HOM05D004397 ORTHO05D005271 1.3e-86 324.3 276 65.6
BolC7t40544H Brassica oleracea HOM05D004397 ORTHO05D005271 1.3e-86 324.3 276 65.6
Hund00398 Selenicereus undatus HOM05D004397 ORTHO05D005271 1.3e-86 324.3 270 65.9
CDE03G0208 Ceratophyllum demersum HOM05D004397 ORTHO05D005271 2.1e-86 323.6 272 68.4
Glyma.09G007300 Glycine max HOM05D004397 ORTHO05D005271 2.1e-86 323.6 266 68.8
CDE06G0724 Ceratophyllum demersum HOM05D004397 ORTHO05D005271 3.7e-86 322.8 323 60.7
Lsat_1_v5_gn_4_51441 Lactuca sativa HOM05D004397 ORTHO05D005271 1.1e-85 321.2 286 64.0
Ah.08g214470 Amaranthus hybridus HOM05D004397 ORTHO05D005271 1.8e-85 320.5 270 66.7
BolC8t51793H Brassica oleracea HOM05D004397 ORTHO05D005271 1.8e-85 320.5 276 64.9
AL3G48030 Arabidopsis lyrata HOM05D004397 ORTHO05D005271 4.1e-85 319.3 276 64.5
Psat5g077520 Pisum sativum HOM05D004397 ORTHO05D005271 4.1e-85 319.3 262 65.6
TWI63G0777 Tripterygium wilfordii HOM05D004397 ORTHO05D005271 5.3e-85 318.9 269 66.2
FAN21G0257 Fragaria x ananassa HOM05D004397 ORTHO05D005271 6.9e-85 318.5 277 64.6
Glyma.15G111700 Glycine max HOM05D004397 ORTHO05D005271 1.2e-84 317.8 271 67.2
TWI38G0690 Tripterygium wilfordii HOM05D004397 ORTHO05D005271 1.2e-84 317.8 267 66.3
ECA236G1813 Erigeron canadensis HOM05D004397 ORTHO05D005271 2.0e-84 317.0 275 65.8
PSO782G1961 Papaver somniferum HOM05D004397 ORTHO05D005271 2.0e-84 317.0 303 60.7
Migut.N02747 Erythranthe guttata HOM05D004397 ORTHO05D005271 2.6e-84 316.6 270 65.2
BcaC07g41228 Brassica carinata HOM05D004397 ORTHO05D005271 4.5e-84 315.8 250 68.0
Rhsim04G0075400 Rhododendron simsii HOM05D004397 ORTHO05D005271 4.5e-84 315.8 306 58.5
C08p42330 Brassica napus HOM05D004397 ORTHO05D005271 5.8e-84 315.5 250 68.0
Sabra04G0002500 Salix brachista HOM05D004397 ORTHO05D005271 1.0e-83 314.7 298 62.1
EL10Ac7g17869 Beta vulgaris HOM05D004397 ORTHO05D005271 2.2e-83 313.5 268 65.3
unitig_37.g12949 Utricularia gibba HOM05D004397 ORTHO05D005271 2.2e-83 313.5 266 65.0
PSO063G2973 Papaver somniferum HOM05D004397 ORTHO05D005271 2.9e-83 313.2 303 59.7
AUR62008935 Chenopodium quinoa HOM05D004397 ORTHO05D005271 6.5e-83 312.0 280 63.2
ATR0307G084 Amborella trichopoda HOM05D004397 ORTHO05D005271 1.1e-82 311.2 280 60.7
Medtr3g107920 Medicago truncatula HOM05D004397 ORTHO05D005271 1.9e-82 310.5 366 52.5
TPR.G34683 Trifolium pratense HOM05D004397 ORTHO05D005271 1.2e-81 307.8 263 63.9
HPP92_018530 Vanilla planifolia HOM05D004397 ORTHO05D005271 1.6e-81 307.4 269 63.6
CARHR110570 Cardamine hirsuta HOM05D004397 ORTHO05D005271 4.6e-81 305.8 275 61.5
A09p59050 Brassica napus HOM05D004397 ORTHO05D005271 7.9e-81 305.1 265 64.9
Os11g0585700 Oryza sativa ssp. japonica HOM05D004397 ORTHO05D005271 7.9e-81 305.1 262 64.5
Peaxi162Scf01073g00117 Petunia axillaris HOM05D004397 ORTHO05D005271 2.3e-80 303.5 270 62.6
BraA09t41289Z Brassica rapa HOM05D004397 ORTHO05D005271 3.9e-80 302.8 266 63.5
SGA_v2.0_scaffold543G52819 Striga asiatica HOM05D004397 ORTHO05D005271 1.9e-79 300.4 275 61.5
Nitab4.5_0002335g0060 Nicotiana tabacum HOM05D004397 ORTHO05D005271 2.5e-79 300.1 270 64.1
Lj4A769T44 Lonicera japonica HOM05D004397 ORTHO05D005271 3.3e-79 299.7 266 63.2
Zm00001eb061360 Zea mays HOM05D004397 ORTHO05D005271 7.4e-79 298.5 262 63.4
MD05G1352400 Malus domestica HOM05D004397 ORTHO05D005271 4.8e-78 295.8 308 58.4
Aqoxy1G03506 Aquilegia oxysepala HOM05D004397 ORTHO05D005271 8.2e-78 295.0 263 62.7
FAN25G3034 Fragaria x ananassa HOM05D004397 ORTHO05D005271 3.1e-77 293.1 261 63.6
MD10G1326400 Malus domestica HOM05D004397 ORTHO05D005271 1.1e-74 284.6 340 52.9
AUR62001111 Chenopodium quinoa HOM05D004397 ORTHO05D005271 5.5e-74 282.3 267 61.4
Oeu023826.3 Olea europaea HOM05D004397 ORTHO05D005271 2.0e-71 273.9 308 54.2
MBI05_g23392_MAGBIO Magnolia biondii HOM05D004397 ORTHO05D005271 2.5e-71 273.5 241 65.1
Actinidia22115 Actinidia chinensis HOM05D004397 ORTHO05D005271 1.3e-70 271.2 212 69.8
BcaB03g16800 Brassica carinata HOM05D004397 ORTHO05D005271 6.3e-70 268.9 218 67.0
vmacro09207 Vaccinium macrocarpon HOM05D004397 ORTHO05D005271 1.4e-69 267.7 264 56.8
Gohir.A06G150933 Gossypium hirsutum HOM05D004397 ORTHO05D005271 2.6e-68 263.5 225 66.2
CAN.G1194.11 Capsicum annuum HOM05D004397 ORTHO05D005271 1.3e-67 261.2 212 68.9
Oeu012435.1 Olea europaea HOM05D004397 ORTHO05D005271 3.8e-67 259.6 219 66.7
MBI05_g10534_MAGBIO Magnolia biondii HOM05D004397 ORTHO05D005271 5.0e-67 259.2 232 63.4
SHI04147 Sapria himalayana HOM05D004397 ORTHO05D005271 6.7e-64 248.8 233 60.9
Gorai.010G183700 Gossypium raimondii HOM05D004397 ORTHO05D005271 9.7e-63 245.0 198 70.2
Migut.O00819 Erythranthe guttata HOM05D004397 ORTHO05D005271 3.2e-58 229.9 197 65.0
Pp3c13_15330 Physcomitrium patens HOM05D004397 ORTHO05D005271 7.5e-55 218.8 233 55.4
AagrBONN_evm.TU.Sc2ySwM_228.2975 Anthoceros agrestis HOM05D004397 ORTHO05D005271 4.5e-52 209.5 236 52.1
SMO116G0021 Selaginella moellendorffii HOM05D004397 ORTHO05D005271 1.3e-51 208.0 230 51.3
Nitab4.5_0002335g0080 Nicotiana tabacum HOM05D004397 ORTHO05D005271 2.2e-51 207.2 227 54.6
Gohir.D06G157201 Gossypium hirsutum HOM05D004397 ORTHO05D005271 1.6e-49 201.1 131 80.9
Mapoly0162s0019 Marchantia polymorpha HOM05D004397 ORTHO05D005271 2.7e-49 200.3 233 50.2
CBR_g40797 Chara braunii HOM05D004397 ORTHO05D005271 3.6e-49 199.9 236 50.4
Cfa000163 Carpinus fangiana HOM05D004397 ORTHO05D005271 6.1e-49 199.1 185 61.6
DCAR_019438 Daucus carota HOM05D004397 ORTHO05D005271 1.0e-48 198.4 194 59.8
DCAR_002834 Daucus carota HOM05D004397 ORTHO05D005271 1.5e-47 194.5 230 53.9
Cc10_g04670 Coffea canephora HOM05D004397 ORTHO05D005271 4.4e-47 193.0 176 63.1
QL05p071977 Quercus lobata HOM05D004397 ORTHO05D005271 6.3e-46 189.1 185 58.4
Peaxi162Scf01027g00012 Petunia axillaris HOM05D004397 ORTHO05D005271 4.1e-45 186.4 247 46.2
Lalb_Chr20g0118941 Lupinus albus HOM05D004397 ORTHO05D005271 7.0e-45 185.7 179 62.0
Nitab4.5_0004376g0020 Nicotiana tabacum HOM05D004397 ORTHO05D005271 3.2e-42 176.8 178 57.9
SalBow7G1927 Salvia bowleyana HOM05D004397 ORTHO05D005271 4.2e-42 176.4 179 59.2
Prupe.4G015300 Prunus persica HOM05D004397 ORTHO05D005271 4.0e-40 169.9 264 45.8
RcHm_v2.0_Chr5g0078391 Rosa chinensis HOM05D004397 ORTHO05D005271 2.0e-39 167.5 282 43.6
SGA_v2.0_scaffold404G51008 Striga asiatica HOM05D004397 ORTHO05D005271 3.7e-38 163.3 256 42.2
MSTRG.25075 Avicennia marina HOM05D004397 ORTHO05D005271 7.0e-37 159.1 144 62.5
arahy.Tifrunner.gnm1.ann1.8Y4J32 Arachis hypogaea HOM05D004397 ORTHO05D005271 2.0e-36 157.5 100 82.0
SalBow7G0488 Salvia bowleyana HOM05D004397 ORTHO05D005271 4.5e-36 156.4 93 84.9
Lalb_Chr20g0118931 Lupinus albus HOM05D004397 ORTHO05D005271 2.9e-35 153.7 93 84.9
Cc10_g04660 Coffea canephora HOM05D004397 ORTHO05D005271 3.6e-33 146.7 92 78.3
FvH4_3g43720 Fragaria vesca HOM05D004397 ORTHO05D005271 3.0e-32 143.7 273 39.6
FAN21G3530 Fragaria x ananassa HOM05D004397 ORTHO05D005271 7.8e-28 129.0 302 36.1
BcaB06g28897 Brassica carinata HOM05D004397 ORTHO05D005271 5.6e-26 122.9 143 53.1
Lsat_1_v5_gn_7_66500 Lactuca sativa HOM05D004397 ORTHO05D005271 1.2e-25 121.7 102 59.8
Aa31LG4G11630 Aethionema arabicum HOM05D008081 ORTHO05D010223 3.1e-24 117.1 102 61.8
BcaB03g16804 Brassica carinata HOM05D004397 ORTHO05D005271 3.7e-22 110.2 69 79.7
Haze_26885 Corylus avellana HOM05D004397 ORTHO05D005271 8.3e-22 109.0 211 35.1
MCO02G150 Micromonas commoda HOM05D004397 ORTHO05D005271 4.3e-18 96.7 205 35.1
PRCOL_00001012 Prasinoderma coloniale HOM05D004397 ORTHO05D005271 5.4e-13 79.7 268 29.1
FvH4_3g43740 Fragaria vesca HOM05D004397 ORTHO05D005271 1.6e-12 78.2 155 36.1
Cre12.g520400 Chlamydomonas reinhardtii HOM05D004397 ORTHO05D005271 2.7e-12 77.4 148 34.5
Actinidia30586 Actinidia chinensis HOM05D004397 ORTHO05D005271 3.9e-11 73.6 39 92.3
Nitab4.5_0000678g0090 Nicotiana tabacum HOM05D004397 ORTHO05D005271 5.1e-11 73.2 40 82.5
Lsat_1_v5_gn_2_18501 Lactuca sativa HOM05D004397 ORTHO05D005271 2.5e-10 70.9 42 78.6
Nitab4.5_0003603g0020 Nicotiana tabacum HOM05D004397 ORTHO05D005271 4.7e-09 66.6 78 52.6
Nitab4.5_0014148g0010 Nicotiana tabacum HOM05D004397 ORTHO05D005271 4.7e-09 66.6 35 85.7
Nitab4.5_0006802g0080 Nicotiana tabacum HOM05D004397 ORTHO05D005271 1.4e-08 65.1 35 82.9
SEGI_15715 Sequoiadendron giganteum HOM05D005872 ORTHO05D008133 3.1e-08 63.9 214 26.2
Nitab4.5_0003290g0070 Nicotiana tabacum HOM05D004397 ORTHO05D005271 4.0e-08 63.5 40 72.5
CDE07G0691 Ceratophyllum demersum HOM05D005872 ORTHO05D008133 6.8e-08 62.8 216 27.3
SMO269G0034 Selaginella moellendorffii HOM05D028135 ORTHO05D375121 6.8e-08 62.8 57 45.6
unitig_0.g444 Utricularia gibba HOM05D005872 ORTHO05D008133 1.5e-07 61.6 217 26.3
CDE06G2541 Ceratophyllum demersum HOM05D005872 ORTHO05D008133 2.0e-07 61.2 133 32.3
Ciclev10017963m.g Citrus clementina HOM05D004397 ORTHO05D005271 2.0e-07 61.2 35 85.7
DCAR_018967 Daucus carota HOM05D000012 ORTHO05D174931 2.0e-07 61.2 215 24.7
Nitab4.5_0003501g0040 Nicotiana tabacum HOM05D004397 ORTHO05D005271 2.0e-07 61.2 64 53.1
Potri.006G221100 Populus trichocarpa HOM05D005872 ORTHO05D008133 2.0e-07 61.2 265 26.0
Pp3c8_21780 Physcomitrium patens HOM05D005872 ORTHO05D008133 3.4e-07 60.5 215 25.6
MCO16G079 Micromonas commoda HOM05D005872 ORTHO05D008133 4.4e-07 60.1 134 30.6
CBR_g17149 Chara braunii HOM05D005872 ORTHO05D008133 5.8e-07 59.7 245 25.3
Peaxi162Scf00003g04831 Petunia axillaris HOM05D005872 ORTHO05D008133 7.6e-07 59.3 251 24.3
Glyma.07G114900 Glycine max HOM05D005872 ORTHO05D008133 9.9e-07 58.9 288 26.4
Duzib168G1043 Durio zibethinus HOM05D005872 ORTHO05D008133 1.3e-06 58.5 256 26.6
SGA_v2.0_scaffold161G37856 Striga asiatica HOM05D005872 ORTHO05D008133 3.7e-06 57.0 266 24.1
Medtr8g006995 Medicago truncatula HOM05D005872 ORTHO05D008133 4.9e-06 56.6 215 25.6
COL.COLO4_19111 Corchorus olitorius HOM05D005872 ORTHO05D008133 6.4e-06 56.2 259 26.3
Lj1A141T52 Lonicera japonica HOM05D005872 ORTHO05D008133 6.4e-06 56.2 254 22.8
Sabra06G0170900 Salix brachista HOM05D005872 ORTHO05D008133 6.4e-06 56.2 265 25.3
SMO347G0310 Selaginella moellendorffii HOM05D005872 ORTHO05D008133 6.4e-06 56.2 213 22.5


User provided reference genes

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