Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007384.2 Cucumis melo HOM05D005226 ORTHO05D004666 4.8e-55 217.6 113 100.0
CsaV3_6G049110 Cucumis sativus L. HOM05D005226 ORTHO05D004666 6.1e-50 200.7 113 92.0
ClCG01G022050 Citrullus lanatus HOM05D005226 ORTHO05D004666 3.7e-47 191.4 113 86.7
Sed0005209 Sechium edule HOM05D005226 ORTHO05D004666 2.8e-39 165.2 115 75.7
Gohir.A05G169600 Gossypium hirsutum HOM05D005226 ORTHO05D004666 4.3e-27 124.8 93 67.7
Gorai.009G178000 Gossypium raimondii HOM05D005226 ORTHO05D004666 9.5e-27 123.6 93 66.7
Gohir.D05G172800 Gossypium hirsutum HOM05D005226 ORTHO05D004666 8.0e-26 120.6 93 65.6
COL.COLO4_31758 Corchorus olitorius HOM05D005226 ORTHO05D004666 2.3e-25 119.0 103 57.3
Duzib235G0113 Durio zibethinus HOM05D005226 ORTHO05D004666 8.9e-25 117.1 103 57.3
Thecc.06G219100 Theobroma cacao HOM05D005226 ORTHO05D004666 3.4e-24 115.2 101 59.4
Duzib160G0401 Durio zibethinus HOM05D005226 ORTHO05D004666 4.4e-24 114.8 94 61.7
FAN25G2807 Fragaria x ananassa HOM05D005226 ORTHO05D004666 7.5e-24 114.0 102 56.9
FvH4_3g02270 Fragaria vesca HOM05D005226 ORTHO05D004666 9.8e-24 113.6 102 56.9
Prupe.4G022200 Prunus persica HOM05D005226 ORTHO05D004666 9.8e-24 113.6 109 54.1
Ciclev10017536m.g Citrus clementina HOM05D005226 ORTHO05D004666 1.7e-23 112.8 107 52.3
Glyma.13G205400 Glycine max HOM05D005226 ORTHO05D004666 2.9e-23 112.1 109 52.3
RcHm_v2.0_Chr5g0003391 Rosa chinensis HOM05D005226 ORTHO05D004666 3.7e-23 111.7 100 57.0
Gohir.A10G013400 Gossypium hirsutum HOM05D005226 ORTHO05D004666 4.9e-23 111.3 92 62.0
Medtr2g022960 Medicago truncatula HOM05D005226 ORTHO05D004666 6.4e-23 110.9 106 50.0
VMungo0540G0286 Vigna mungo HOM05D005226 ORTHO05D004666 6.4e-23 110.9 94 55.3
TPR.G7637 Trifolium pratense HOM05D005226 ORTHO05D004666 8.3e-23 110.5 106 49.1
Phvul.006G150300 Phaseolus vulgaris HOM05D005226 ORTHO05D004666 1.1e-22 110.2 94 56.4
Duzib192G0836 Durio zibethinus HOM05D005226 ORTHO05D004666 1.4e-22 109.8 102 56.9
Glyma.15G107000 Glycine max HOM05D005226 ORTHO05D004666 2.4e-22 109.0 108 51.9
Gohir.D10G013300 Gossypium hirsutum HOM05D005226 ORTHO05D004666 3.2e-22 108.6 91 60.4
Gorai.011G015000 Gossypium raimondii HOM05D005226 ORTHO05D004666 3.2e-22 108.6 91 60.4
Thecc.06G087600 Theobroma cacao HOM05D005226 ORTHO05D004666 4.1e-22 108.2 92 62.0
MD00G1206700 Malus domestica HOM05D005226 ORTHO05D004666 9.2e-22 107.1 113 52.2
MD10G1320200 Malus domestica HOM05D005226 ORTHO05D004666 9.2e-22 107.1 113 52.2
CANSAT56G2875 Cannabis sativa HOM05D005226 ORTHO05D004666 5.9e-21 104.4 108 50.9
Sabra04G0009100 Salix brachista HOM05D005226 ORTHO05D004666 5.9e-21 104.4 112 51.8
Lj6g0027274 Lotus japonicus HOM05D005226 ORTHO05D004666 7.8e-21 104.0 106 47.2
Lalb_Chr15g0087551 Lupinus albus HOM05D005226 ORTHO05D004666 1.0e-20 103.6 106 47.2
MD05G1344200 Malus domestica HOM05D005226 ORTHO05D004666 1.0e-20 103.6 98 53.1
Manes.16G008100 Manihot esculenta HOM05D005226 ORTHO05D004666 1.7e-20 102.8 112 51.8
CiPaw.09G090600 Carya illinoinensis HOM05D005226 ORTHO05D004666 4.3e-19 98.2 90 57.8
MELO3C002462.2 Cucumis melo HOM05D005226 ORTHO05D004666 4.3e-19 98.2 113 47.8
Sed0027353 Sechium edule HOM05D005226 ORTHO05D004666 4.3e-19 98.2 113 49.6
TAR627G0695 Trochodendron aralioides HOM05D005226 ORTHO05D004666 4.3e-19 98.2 91 58.2
QL05p073519 Quercus lobata HOM05D005226 ORTHO05D004666 5.6e-19 97.8 98 50.0
QL05p073756 Quercus lobata HOM05D005226 ORTHO05D004666 5.6e-19 97.8 98 50.0
ClCG03G004790 Citrullus lanatus HOM05D005226 ORTHO05D004666 7.3e-19 97.4 105 49.5
CsaV3_1G010830 Cucumis sativus L. HOM05D005226 ORTHO05D004666 9.5e-19 97.1 113 48.7
TWI38G0534 Tripterygium wilfordii HOM05D005226 ORTHO05D004666 2.1e-18 95.9 94 53.2
Aqoxy1G03603 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 2.8e-18 95.5 95 53.7
Lalb_Chr18g0056301 Lupinus albus HOM05D005226 ORTHO05D004666 2.8e-18 95.5 106 45.3
Potri.011G002100 Populus trichocarpa HOM05D005226 ORTHO05D004666 3.6e-18 95.1 112 49.1
Sed0011520 Sechium edule HOM05D005226 ORTHO05D004666 6.2e-18 94.4 110 48.2
Potri.004G016800 Populus trichocarpa HOM05D005226 ORTHO05D004666 1.8e-17 92.8 102 52.0
Nn5g29365 Nelumbo nucifera HOM05D005226 ORTHO05D004666 2.3e-17 92.4 98 49.0
Cfa000235 Carpinus fangiana HOM05D005226 ORTHO05D004666 3.1e-17 92.0 101 48.5
Eucgr.E04074 Eucalyptus grandis HOM05D005226 ORTHO05D004666 3.1e-17 92.0 91 51.6
Cc09_g01800 Coffea canephora HOM05D005226 ORTHO05D004666 4.0e-17 91.7 93 47.3
DCAR_004212 Daucus carota HOM05D005226 ORTHO05D004666 4.0e-17 91.7 101 50.5
CAN.G569.14 Capsicum annuum HOM05D005226 ORTHO05D004666 6.8e-17 90.9 112 38.4
TAR624G0719 Trochodendron aralioides HOM05D005226 ORTHO05D004666 8.9e-17 90.5 106 45.3
Haze_06787 Corylus avellana HOM05D005226 ORTHO05D004666 1.2e-16 90.1 101 51.5
Gohir.D06G153975 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.2e-16 90.1 90 54.4
Gorai.010G180000 Gossypium raimondii HOM05D005226 ORTHO05D004666 1.2e-16 90.1 90 53.3
Nn1g03549 Nelumbo nucifera HOM05D005226 ORTHO05D004666 1.2e-16 90.1 97 48.5
Dinv20040 Davidia involucrata HOM05D005226 ORTHO05D004666 2.0e-16 89.4 90 54.4
CiPaw.10G070100 Carya illinoinensis HOM05D005226 ORTHO05D004666 4.4e-16 88.2 87 52.9
Eucgr.D01311 Eucalyptus grandis HOM05D005226 ORTHO05D004666 7.5e-16 87.4 113 46.9
Gohir.A06G148050 Gossypium hirsutum HOM05D005226 ORTHO05D004666 1.3e-15 86.7 90 51.1
Solyc02g080450.1 Solanum lycopersicum HOM05D005226 ORTHO05D004666 1.7e-15 86.3 100 40.0
Sopen02g025140 Solanum pennellii HOM05D005226 ORTHO05D004666 1.7e-15 86.3 100 40.0
Eucgr.E04072 Eucalyptus grandis HOM05D005226 ORTHO05D004666 2.9e-15 85.5 91 49.5
Haze_09878 Corylus avellana HOM05D005226 ORTHO05D004666 4.9e-15 84.7 97 51.5
Eucgr.D01314 Eucalyptus grandis HOM05D005226 ORTHO05D004666 4.9e-15 84.7 113 44.2
PGR004G1778 Punica granatum HOM05D005226 ORTHO05D004666 4.9e-15 84.7 104 43.3
Atru.chr10.2207 Acer truncatum HOM05D005226 ORTHO05D004666 6.4e-15 84.3 114 43.9
Cfa021903 Carpinus fangiana HOM05D005226 ORTHO05D004666 6.4e-15 84.3 98 51.0
Eucgr.E04071 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.4e-14 83.2 91 48.4
Eucgr.L02166 Eucalyptus grandis HOM05D005226 ORTHO05D004666 1.4e-14 83.2 113 45.1
Oeu051213.1 Olea europaea HOM05D005226 ORTHO05D004666 1.4e-14 83.2 87 47.1
PSO210G5560 Papaver somniferum HOM05D005226 ORTHO05D004666 1.4e-14 83.2 116 44.0
Migut.M01309 Erythranthe guttata HOM05D005226 ORTHO05D004666 1.6e-13 79.7 102 42.2
DCAR_008143 Daucus carota HOM05D005226 ORTHO05D004666 2.0e-13 79.3 96 44.8
PGR042G2779 Punica granatum HOM05D005226 ORTHO05D004666 2.7e-13 79.0 93 48.4
Rhsim02G0109500 Rhododendron simsii HOM05D005226 ORTHO05D004666 2.7e-13 79.0 102 42.2
PGSC0003DMG400016491 Solanum tuberosum HOM05D005226 ORTHO05D004666 2.7e-13 79.0 84 42.9
Nitab4.5_0003254g0050 Nicotiana tabacum HOM05D005226 ORTHO05D004666 3.5e-13 78.6 95 41.1
PSO832G1518 Papaver somniferum HOM05D005226 ORTHO05D004666 4.6e-13 78.2 98 45.9
Rhsim02G0108700 Rhododendron simsii HOM05D005226 ORTHO05D004666 4.6e-13 78.2 87 43.7
Glyma.18G063800 Glycine max HOM05D005226 ORTHO05D004666 1.3e-12 76.6 103 44.7
Hma1.2p1_1142F.1_g260990 Hydrangea macrophylla HOM05D005226 ORTHO05D004666 1.7e-12 76.3 92 44.6
SGA_v2.0_scaffold89G27461 Striga asiatica HOM05D005226 ORTHO05D004666 1.7e-12 76.3 107 39.3
Nitab4.5_0006137g0040 Nicotiana tabacum HOM05D005226 ORTHO05D004666 2.3e-12 75.9 100 39.0
Rhsim02G0108200 Rhododendron simsii HOM05D005226 ORTHO05D004666 3.9e-12 75.1 88 43.2
PGSC0003DMG400004522 Solanum tuberosum HOM05D005226 ORTHO05D004666 1.1e-11 73.6 88 40.9
SGA_v2.0_scaffold4G01918 Striga asiatica HOM05D005226 ORTHO05D004666 1.1e-11 73.6 105 38.1
Aqoxy4G01362 Aquilegia oxysepala HOM05D005226 ORTHO05D004666 1.9e-11 72.8 73 53.4
MBI18_g02740_MAGBIO Magnolia biondii HOM05D005226 ORTHO05D004666 1.9e-11 72.8 92 41.3
MSTRG.13145 Avicennia marina HOM05D005226 ORTHO05D004666 3.3e-11 72.0 79 45.6
THA.LOC104818840 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 3.3e-11 72.0 76 48.7
Nitab4.5_0000005g0440 Nicotiana tabacum HOM05D005226 ORTHO05D004666 4.3e-11 71.6 104 37.5
Carub.0001s1129 Capsella rubella HOM05D005226 ORTHO05D004666 5.6e-11 71.2 96 43.8
Peaxi162Scf00262g00094 Petunia axillaris HOM05D005226 ORTHO05D004666 5.6e-11 71.2 80 43.8
Thhalv10009573m.g Eutrema salsugineum HOM05D005226 ORTHO05D004666 7.3e-11 70.9 97 42.3
Rhsim02G0109000 Rhododendron simsii HOM05D005226 ORTHO05D004666 9.5e-11 70.5 76 44.7
HanXRQChr16g0515991 Helianthus annuus HOM05D005226 ORTHO05D004666 1.2e-10 70.1 84 47.6
AT1G11655 Arabidopsis thaliana HOM05D005226 ORTHO05D004666 1.6e-10 69.7 96 41.7
A09p64400 Brassica napus HOM05D005226 ORTHO05D004666 1.6e-10 69.7 109 40.4
BraA09t41784Z Brassica rapa HOM05D005226 ORTHO05D004666 1.6e-10 69.7 109 40.4
Medtr3g463740 Medicago truncatula HOM05D005226 ORTHO05D004666 1.6e-10 69.7 65 56.9
Lsat_1_v5_gn_4_59601 Lactuca sativa HOM05D005226 ORTHO05D004666 2.1e-10 69.3 79 48.1
Peaxi162Scf00565g00021 Petunia axillaris HOM05D005226 ORTHO05D004666 2.8e-10 68.9 90 38.9
C08p48100 Brassica napus HOM05D005226 ORTHO05D004666 3.6e-10 68.6 109 38.5
ECA234G1355 Erigeron canadensis HOM05D005226 ORTHO05D004666 4.7e-10 68.2 107 41.1
AL1G22790 Arabidopsis lyrata HOM05D005226 ORTHO05D004666 6.2e-10 67.8 96 41.7
BcaC07g41768 Brassica carinata HOM05D005226 ORTHO05D004666 6.2e-10 67.8 103 39.8
BcaNung04807 Brassica carinata HOM05D005226 ORTHO05D004666 6.2e-10 67.8 97 40.2
Nitab4.5_0000389g0060 Nicotiana tabacum HOM05D005226 ORTHO05D004666 8.1e-10 67.4 90 40.0
BcaB01g02575 Brassica carinata HOM05D009543 ORTHO05D004666 1.1e-09 67.0 70 50.0
BolC8t49112H Brassica oleracea HOM05D005226 ORTHO05D004666 1.4e-09 66.6 115 36.5
Oeu033894.1 Olea europaea HOM05D005226 ORTHO05D004666 1.4e-09 66.6 107 32.7
CARHR011960 Cardamine hirsuta HOM05D005226 ORTHO05D004666 2.3e-09 65.9 97 41.2
Aa31LG1G3110 Aethionema arabicum HOM05D005226 ORTHO05D004666 3.1e-09 65.5 67 50.7
A08p33360 Brassica napus HOM05D005226 ORTHO05D004666 3.1e-09 65.5 113 38.9
BolC5t29718H Brassica oleracea HOM05D005226 ORTHO05D004666 3.1e-09 65.5 97 38.1
THA.LOC104806304 Tarenaya hassleriana HOM05D005226 ORTHO05D004666 3.1e-09 65.5 113 36.3
arahy.Tifrunner.gnm1.ann1.0GES1T Arachis hypogaea HOM05D005226 ORTHO05D004666 4.0e-09 65.1 73 52.1
arahy.Tifrunner.gnm1.ann1.1P1WAU Arachis hypogaea HOM05D005226 ORTHO05D004666 4.0e-09 65.1 73 52.1
arahy.Tifrunner.gnm1.ann1.89FC4C Arachis hypogaea HOM05D005226 ORTHO05D004666 5.2e-09 64.7 101 43.6
AT4G04745 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 6.8e-09 64.3 78 44.9
BcaC07g38677 Brassica carinata HOM05D005226 ORTHO05D004666 8.9e-09 63.9 111 36.9
C08p14770 Brassica napus HOM05D005226 ORTHO05D004666 8.9e-09 63.9 103 37.9
Thhalv10029169m.g Eutrema salsugineum HOM05D009543 ORTHO05D004666 8.9e-09 63.9 78 43.6
A06p08210 Brassica napus HOM05D005226 ORTHO05D004666 1.2e-08 63.5 97 38.1
BraA06t24021Z Brassica rapa HOM05D005226 ORTHO05D004666 1.2e-08 63.5 97 38.1
BraA08t35253Z Brassica rapa HOM05D005226 ORTHO05D004666 2.0e-08 62.8 113 38.1
CARHR252810 Cardamine hirsuta HOM05D009543 ORTHO05D004666 2.0e-08 62.8 78 43.6
TPR.G21187 Trifolium pratense HOM05D005226 ORTHO05D004666 2.0e-08 62.8 64 50.0
AL6G48230 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 2.6e-08 62.4 78 43.6
BcaB08g37410 Brassica carinata HOM05D005226 ORTHO05D004666 2.6e-08 62.4 97 39.2
BraA01t01269Z Brassica rapa HOM05D009543 ORTHO05D004666 2.6e-08 62.4 78 44.9
C03p36430 Brassica napus HOM05D009543 ORTHO05D004666 3.4e-08 62.0 70 47.1
BolC3t15955H Brassica oleracea HOM05D009543 ORTHO05D004666 3.4e-08 62.0 70 47.1
BcaC05g25032 Brassica carinata HOM05D005226 ORTHO05D004666 4.4e-08 61.6 97 37.1
BcaC09g51183 Brassica carinata HOM05D009543 ORTHO05D004666 4.4e-08 61.6 76 46.1
C01p15970 Brassica napus HOM05D009543 ORTHO05D004666 4.4e-08 61.6 76 46.1
BolC1t01557H Brassica oleracea HOM05D009543 ORTHO05D004666 4.4e-08 61.6 76 46.1
A03p30180 Brassica napus HOM05D009543 ORTHO05D004666 5.8e-08 61.2 70 45.7
BraA03t12202Z Brassica rapa HOM05D009543 ORTHO05D004666 5.8e-08 61.2 70 45.7
Carub.0006s3264 Capsella rubella HOM05D009543 ORTHO05D004666 5.8e-08 61.2 82 40.2
C05p09770 Brassica napus HOM05D005226 ORTHO05D004666 7.5e-08 60.8 101 35.6
CARHR228690 Cardamine hirsuta HOM05D009543 ORTHO05D004666 1.3e-07 60.1 74 43.2
Peaxi162Scf00565g00036 Petunia axillaris HOM05D005226 ORTHO05D004666 1.3e-07 60.1 94 40.4
Sp6g04195 Schrenkiella parvula HOM05D009543 ORTHO05D004666 1.3e-07 60.1 78 41.0
SalBow8G4932 Salvia bowleyana HOM05D005226 ORTHO05D004666 2.2e-07 59.3 85 38.8
ATR0752G088 Amborella trichopoda HOM05D005226 ORTHO05D004666 2.9e-07 58.9 84 42.9
BcaB03g13244 Brassica carinata HOM05D005226 ORTHO05D004666 3.7e-07 58.5 87 41.4
A09p26130 Brassica napus HOM05D009543 ORTHO05D004666 3.7e-07 58.5 87 39.1
BraA09t38180Z Brassica rapa HOM05D009543 ORTHO05D004666 3.7e-07 58.5 87 39.1
BcaNung02262 Brassica carinata HOM05D009543 ORTHO05D004666 4.9e-07 58.2 97 34.0
unitig_749.g13630 Utricularia gibba HOM05D005226 ORTHO05D004666 4.9e-07 58.2 83 41.0
BcaC04g21321 Brassica carinata HOM05D009543 ORTHO05D004666 6.4e-07 57.8 86 38.4
C09p33170 Brassica napus HOM05D009543 ORTHO05D004666 6.4e-07 57.8 86 38.4
BolC9t56151H Brassica oleracea HOM05D009543 ORTHO05D004666 6.4e-07 57.8 86 38.4
AT4G21902 Arabidopsis thaliana HOM05D009543 ORTHO05D004666 1.1e-06 57.0 76 40.8
BcaB01g01831 Brassica carinata HOM05D009543 ORTHO05D004666 1.1e-06 57.0 86 37.2
AL7G31950 Arabidopsis lyrata HOM05D009543 ORTHO05D004666 2.4e-06 55.8 72 41.7
unitig_26.g9388 Utricularia gibba HOM05D005226 ORTHO05D004666 3.2e-06 55.5 63 42.9
Sp7g20070 Schrenkiella parvula HOM05D009543 ORTHO05D004666 7.1e-06 54.3 78 43.6


User provided reference genes

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