Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007295.2 Cucumis melo HOM05D007576 ORTHO05D009576 0.0e+00 1421.4 732 100.0
CsaV3_6G050020 Cucumis sativus L. HOM05D007576 ORTHO05D009576 0.0e+00 1351.7 732 95.2
ClCG01G022850 Citrullus lanatus HOM05D007576 ORTHO05D009576 0.0e+00 1307.7 732 91.3
Sed0017500 Sechium edule HOM05D007576 ORTHO05D009576 0.0e+00 1113.2 739 79.2
Cfa000420 Carpinus fangiana HOM05D007576 ORTHO05D009576 9.6e-205 717.6 722 54.7
QL05p039732 Quercus lobata HOM05D007576 ORTHO05D009576 1.0e-193 681.0 751 52.3
Manes.17G043700 Manihot esculenta HOM05D007576 ORTHO05D009576 4.8e-188 662.1 745 51.7
Sabra11G0034500 Salix brachista HOM05D007576 ORTHO05D009576 1.5e-186 657.1 684 54.2
Potri.011G050600 Populus trichocarpa HOM05D007576 ORTHO05D009576 1.1e-184 651.0 690 54.2
Duzib192G1068 Durio zibethinus HOM05D007576 ORTHO05D009576 1.4e-184 650.6 741 52.1
Dinv07540 Davidia involucrata HOM05D007576 ORTHO05D009576 2.5e-184 649.8 757 49.8
CiPaw.09G057800 Carya illinoinensis HOM05D007576 ORTHO05D009576 1.8e-182 643.7 690 52.8
RcHm_v2.0_Chr5g0008071 Rosa chinensis HOM05D007576 ORTHO05D009576 8.8e-182 641.3 743 50.2
CSS0005805 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 1.4e-179 634.0 757 49.9
Thecc.06G190300 Theobroma cacao HOM05D007576 ORTHO05D009576 1.4e-179 634.0 706 52.4
FAN11G2000 Fragaria x ananassa HOM05D007576 ORTHO05D009576 4.1e-179 632.5 736 49.7
FAN16G1901 Fragaria x ananassa HOM05D007576 ORTHO05D009576 1.5e-178 630.6 738 50.1
Ciclev10014397m.g Citrus clementina HOM05D007576 ORTHO05D009576 3.4e-178 629.4 721 49.2
FAN25G3788 Fragaria x ananassa HOM05D007576 ORTHO05D009576 1.0e-177 627.9 737 49.9
MD10G1296200 Malus domestica HOM05D007576 ORTHO05D009576 1.1e-176 624.4 721 49.4
FvH4_3g04910 Fragaria vesca HOM05D007576 ORTHO05D009576 4.2e-176 622.5 731 49.4
FAN21G0504 Fragaria x ananassa HOM05D007576 ORTHO05D009576 1.5e-173 614.0 738 49.2
COL.COLO4_31497 Corchorus olitorius HOM05D007576 ORTHO05D009576 7.7e-170 601.7 709 50.1
MD05G1314800 Malus domestica HOM05D007576 ORTHO05D009576 6.5e-169 598.6 721 48.7
Prupe.4G044400 Prunus persica HOM05D007576 ORTHO05D009576 2.7e-167 593.2 735 48.3
Glyma.05G009500 Glycine max HOM05D007576 ORTHO05D009576 2.3e-166 590.1 702 48.0
TWI38G1553 Tripterygium wilfordii HOM05D007576 ORTHO05D009576 2.4e-163 580.1 731 47.9
RhsimUnG0044800 Rhododendron simsii HOM05D007576 ORTHO05D009576 1.2e-162 577.8 752 46.3
Gohir.A06G126300 Gossypium hirsutum HOM05D007576 ORTHO05D009576 2.6e-162 576.6 683 49.9
Gorai.010G153000 Gossypium raimondii HOM05D007576 ORTHO05D009576 2.6e-162 576.6 709 48.5
Haze_06496 Corylus avellana HOM05D007576 ORTHO05D009576 1.0e-161 574.7 631 50.7
Gohir.D06G131100 Gossypium hirsutum HOM05D007576 ORTHO05D009576 1.3e-161 574.3 709 48.4
Phvul.003G161900 Phaseolus vulgaris HOM05D007576 ORTHO05D009576 2.9e-161 573.2 687 46.6
Glyma.17G117500 Glycine max HOM05D007576 ORTHO05D009576 1.5e-160 570.9 700 47.0
CANSAT35G0220 Cannabis sativa HOM05D007576 ORTHO05D009576 2.7e-159 566.6 756 46.6
Lalb_Chr13g0302021 Lupinus albus HOM05D007576 ORTHO05D009576 1.0e-158 564.7 719 45.5
VMungo1215G0476 Vigna mungo HOM05D007576 ORTHO05D009576 6.8e-158 562.0 691 46.2
arahy.Tifrunner.gnm1.ann1.TJT9YV Arachis hypogaea HOM05D007576 ORTHO05D009576 1.3e-156 557.8 674 47.5
arahy.Tifrunner.gnm1.ann1.TJX0PA Arachis hypogaea HOM05D007576 ORTHO05D009576 3.7e-156 556.2 675 47.3
Cpa.g.sc1598.2 Carica papaya HOM05D007576 ORTHO05D009576 5.9e-154 548.9 718 47.6
Lj1A1207T83 Lonicera japonica HOM05D007576 ORTHO05D009576 5.2e-150 535.8 726 46.4
Ca_21702_v3 Cicer arietinum L. HOM05D007576 ORTHO05D009576 3.7e-148 529.6 742 43.3
Eucgr.E03347 Eucalyptus grandis HOM05D007576 ORTHO05D009576 1.1e-147 528.1 692 46.8
Lj4g0015142 Lotus japonicus HOM05D007576 ORTHO05D009576 3.1e-147 526.6 738 42.0
Psat4g041840 Pisum sativum HOM05D007576 ORTHO05D009576 7.7e-146 521.9 686 45.5
Medtr4g113740 Medicago truncatula HOM05D007576 ORTHO05D009576 6.6e-145 518.8 744 42.7
Nitab4.5_0009493g0040 Nicotiana tabacum HOM05D007576 ORTHO05D009576 2.5e-144 516.9 753 43.4
Nitab4.5_0001357g0010 Nicotiana tabacum HOM05D007576 ORTHO05D009576 3.6e-143 513.1 757 43.3
Nn1g06600 Nelumbo nucifera HOM05D007576 ORTHO05D009576 2.3e-142 510.4 742 44.3
Hund21235 Selenicereus undatus HOM05D007576 ORTHO05D009576 6.8e-142 508.8 724 44.2
PGSC0003DMG400022439 Solanum tuberosum HOM05D007576 ORTHO05D009576 1.3e-137 494.6 753 42.4
MSTRG.15916 Avicennia marina HOM05D007576 ORTHO05D009576 4.3e-136 489.6 751 42.7
AUR62014798 Chenopodium quinoa HOM05D007576 ORTHO05D009576 9.5e-136 488.4 742 43.9
Sopen02g023320 Solanum pennellii HOM05D007576 ORTHO05D009576 3.6e-135 486.5 754 42.4
AUR62016989 Chenopodium quinoa HOM05D007576 ORTHO05D009576 2.3e-134 483.8 724 44.3
EL10Ac8g20358 Beta vulgaris HOM05D007576 ORTHO05D009576 1.5e-133 481.1 734 42.8
PSO675G5421 Papaver somniferum HOM05D007576 ORTHO05D009576 4.4e-133 479.6 769 41.7
Sc05g0007790 Simmondsia chinensis HOM05D007576 ORTHO05D009576 4.9e-132 476.1 740 42.7
CAN.G1164.10 Capsicum annuum HOM05D007576 ORTHO05D009576 1.9e-131 474.2 747 42.2
Ah.14g089350 Amaranthus hybridus HOM05D007576 ORTHO05D009576 2.0e-130 470.7 743 41.7
Aqoxy1G02531 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 1.9e-128 464.2 759 41.9
Aqoxy1G02534 Aquilegia oxysepala HOM05D007576 ORTHO05D009576 1.9e-128 464.2 759 41.9
Cc02_g13130 Coffea canephora HOM05D007576 ORTHO05D009576 1.8e-126 457.6 754 41.6
Migut.M01192 Erythranthe guttata HOM05D007576 ORTHO05D009576 4.4e-125 453.0 739 41.4
PGR042G0577 Punica granatum HOM05D007576 ORTHO05D009576 2.9e-124 450.3 713 41.4
MBI18_g17005_MAGBIO Magnolia biondii HOM05D007576 ORTHO05D009576 9.2e-123 445.3 838 39.4
SGA_v2.0_scaffold7G03972 Striga asiatica HOM05D007576 ORTHO05D009576 1.3e-121 441.4 699 40.3
DCAR_008044 Daucus carota HOM05D007576 ORTHO05D009576 3.3e-120 436.8 681 42.3
SalBow8G3709 Salvia bowleyana HOM05D007576 ORTHO05D009576 2.1e-119 434.1 698 41.7
HanXRQChr16g0518181 Helianthus annuus HOM05D007576 ORTHO05D009576 1.2e-117 428.3 692 40.8
Lsat_1_v5_gn_4_52541 Lactuca sativa HOM05D007576 ORTHO05D009576 1.1e-115 421.8 692 40.8
Peaxi162Scf00947g00422 Petunia axillaris HOM05D007576 ORTHO05D009576 6.2e-111 406.0 589 42.3
ECA234G2395 Erigeron canadensis HOM05D007576 ORTHO05D009576 1.1e-107 395.2 679 40.5
Atru.chr10.1919 Acer truncatum HOM05D007576 ORTHO05D009576 7.8e-106 389.0 534 46.3
GSVIVG01002036001 Vitis vinifera HOM05D007576 ORTHO05D009576 1.6e-103 381.3 303 65.3
CSS0010553 Camellia sinensis var. sinensis HOM05D007576 ORTHO05D009576 3.6e-103 380.2 733 38.5
HPP92_014806 Vanilla planifolia HOM05D007576 ORTHO05D009576 1.3e-100 371.7 794 36.3
TPR.G10703 Trifolium pratense HOM05D007576 ORTHO05D009576 4.0e-94 350.1 334 57.2
PSO541G6317 Papaver somniferum HOM05D007576 ORTHO05D009576 2.0e-93 347.8 464 47.0
Ciclev10008775m.g Citrus clementina HOM05D007576 ORTHO05D009576 2.3e-81 307.8 388 48.2
Oeu038219.1 Olea europaea HOM05D007576 ORTHO05D009576 5.1e-81 306.6 241 65.1
CDE01G0107 Ceratophyllum demersum HOM05D007576 ORTHO05D009576 6.9e-78 296.2 547 37.7
ATR0680G038 Amborella trichopoda HOM05D007576 ORTHO05D009576 2.6e-77 294.3 504 39.7
Os06g0731700 Oryza sativa ssp. japonica HOM05D007576 ORTHO05D009576 1.8e-73 281.6 333 48.6
Zm00001eb229030 Zea mays HOM05D007576 ORTHO05D009576 5.7e-72 276.6 272 55.1
MELO3C003884.2 Cucumis melo HOM05D007576 ORTHO05D009576 2.2e-55 221.5 156 76.9
Pp3c11_25570 Physcomitrium patens HOM05D007576 ORTHO05D009576 8.5e-52 209.5 254 46.1
Mapoly0181s0007 Marchantia polymorpha HOM05D007576 ORTHO05D009576 1.4e-49 202.2 346 37.3
Duzib235G0673 Durio zibethinus HOM05D007576 ORTHO05D009576 1.7e-47 195.3 159 66.0
Ciclev10009735m.g Citrus clementina HOM05D007576 ORTHO05D009576 5.2e-41 173.7 157 59.9
Lj2g0021670 Lotus japonicus HOM05D007576 ORTHO05D009576 2.9e-36 157.9 204 44.1
Atru.chr10.1928 Acer truncatum HOM05D007576 ORTHO05D009576 2.3e-33 148.3 349 35.0
Solyc02g078470.4 Solanum lycopersicum HOM05D007576 ORTHO05D009576 2.3e-28 131.7 100 64.0
MELO3C029166.2 Cucumis melo HOM05D005813 ORTHO05D009576 8.6e-28 129.8 72 93.1
CBR_g49326 Chara braunii HOM05D007576 ORTHO05D000002 5.2e-25 120.6 186 38.2
ECA247G2871 Erigeron canadensis HOM05D000526 ORTHO05D000956 6.8e-17 93.6 80 58.8
SEGI_32076 Sequoiadendron giganteum HOM05D007576 ORTHO05D009576 1.1e-14 86.3 85 47.1
Atru.chr10.1920 Acer truncatum HOM05D007576 ORTHO05D009576 7.3e-11 73.6 114 43.9
Cre13.g589167 Chlamydomonas reinhardtii HOM05D007576 ORTHO05D009576 1.8e-09 68.9 234 27.4
QL05p034837 Quercus lobata HOM05D007576 ORTHO05D009576 7.5e-08 63.5 63 52.4


User provided reference genes

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