Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007264.2 Cucumis melo HOM05D007507 ORTHO05D009420 3.2e-63 245.0 127 100.0
CsaV3_6G050370 Cucumis sativus L. HOM05D007507 ORTHO05D009420 3.1e-50 201.8 126 87.3
ClCG01G023220 Citrullus lanatus HOM05D007507 ORTHO05D009420 2.4e-39 165.6 127 70.9
Sed0011593 Sechium edule HOM05D007507 ORTHO05D009420 4.6e-30 134.8 127 64.6
VMungo0251G0526 Vigna mungo HOM05D007507 ORTHO05D009420 4.5e-17 91.7 132 46.2
Glyma.13G175400 Glycine max HOM05D007507 ORTHO05D009420 3.8e-16 88.6 119 50.4
Hma1.2p1_0558F.1_g178550 Hydrangea macrophylla HOM05D007507 ORTHO05D009420 6.5e-16 87.8 102 51.0
Glyma.07G201000 Glycine max HOM05D007507 ORTHO05D009420 8.5e-16 87.4 119 48.7
Actinidia16570 Actinidia chinensis HOM05D007507 ORTHO05D009420 3.2e-15 85.5 124 41.1
QL05p042078 Quercus lobata HOM05D007507 ORTHO05D009420 3.2e-15 85.5 129 43.4
RcHm_v2.0_Chr5g0009091 Rosa chinensis HOM05D007507 ORTHO05D009420 1.6e-14 83.2 103 46.6
Actinidia05654 Actinidia chinensis HOM05D007507 ORTHO05D009420 4.6e-14 81.6 97 47.4
FAN21G1585 Fragaria x ananassa HOM05D007507 ORTHO05D009420 6.1e-14 81.3 104 47.1
CiPaw.10G052300 Carya illinoinensis HOM05D007507 ORTHO05D009420 7.9e-14 80.9 101 47.5
Glyma.15G077500 Glycine max HOM05D007507 ORTHO05D009420 7.9e-14 80.9 117 47.0
FvH4_3g08680 Fragaria vesca HOM05D007507 ORTHO05D009420 3.0e-13 79.0 103 45.6
Glyma.13G236200 Glycine max HOM05D007507 ORTHO05D009420 3.0e-13 79.0 113 48.7
MD10G1289800 Malus domestica HOM05D007507 ORTHO05D009420 3.0e-13 79.0 100 44.0
Lsat_1_v5_gn_7_22681 Lactuca sativa HOM05D007507 ORTHO05D009420 5.1e-13 78.2 98 44.9
Phvul.002G232000 Phaseolus vulgaris HOM05D007507 ORTHO05D009420 6.7e-13 77.8 103 46.6
Sabra11G0039300 Salix brachista HOM05D007507 ORTHO05D009420 6.7e-13 77.8 131 42.7
TPR.G19926 Trifolium pratense HOM05D007507 ORTHO05D009420 6.7e-13 77.8 123 39.8
arahy.Tifrunner.gnm1.ann1.IERL18 Arachis hypogaea HOM05D007507 ORTHO05D009420 8.8e-13 77.4 114 45.6
CSS0001598 Camellia sinensis var. sinensis HOM05D007507 ORTHO05D009420 8.8e-13 77.4 125 40.8
TPR.G39426 Trifolium pratense HOM05D007507 ORTHO05D009420 8.8e-13 77.4 105 43.8
Cc02_g13780 Coffea canephora HOM05D007507 ORTHO05D009420 1.1e-12 77.0 128 42.2
Migut.H01473 Erythranthe guttata HOM05D007507 ORTHO05D009420 1.1e-12 77.0 131 42.0
GSVIVG01021107001 Vitis vinifera HOM05D007507 ORTHO05D009420 1.1e-12 77.0 130 43.1
Thecc.06G181600 Theobroma cacao HOM05D007507 ORTHO05D009420 1.5e-12 76.6 125 41.6
FAN11G0818 Fragaria x ananassa HOM05D007507 ORTHO05D009420 2.5e-12 75.9 104 46.2
MD05G1310700 Malus domestica HOM05D007507 ORTHO05D009420 2.5e-12 75.9 96 43.8
Prupe.4G051900 Prunus persica HOM05D007507 ORTHO05D009420 2.5e-12 75.9 101 46.5
HanXRQChr04g0113131 Helianthus annuus HOM05D007507 ORTHO05D009420 4.3e-12 75.1 102 43.1
TAR626G1744 Trochodendron aralioides HOM05D007507 ORTHO05D009420 4.3e-12 75.1 130 43.1
Dinv40597 Davidia involucrata HOM05D007507 ORTHO05D009420 5.7e-12 74.7 100 47.0
Medtr4g088390 Medicago truncatula HOM05D007507 ORTHO05D009420 5.7e-12 74.7 128 39.8
Potri.004G048201 Populus trichocarpa HOM05D007507 ORTHO05D009420 5.7e-12 74.7 131 42.7
Duzib235G0685 Durio zibethinus HOM05D007507 ORTHO05D009420 9.7e-12 73.9 132 42.4
Lalb_Chr20g0121601 Lupinus albus HOM05D007507 ORTHO05D009420 9.7e-12 73.9 128 39.8
Medtr2g014380 Medicago truncatula HOM05D007507 ORTHO05D009420 9.7e-12 73.9 101 40.6
arahy.Tifrunner.gnm1.ann1.UCBT0G Arachis hypogaea HOM05D007507 ORTHO05D009420 1.3e-11 73.6 114 43.9
Gorai.009G167100 Gossypium raimondii HOM05D007507 ORTHO05D009420 1.7e-11 73.2 104 45.2
Gohir.D05G162100 Gossypium hirsutum HOM05D007507 ORTHO05D009420 2.2e-11 72.8 119 42.0
Sabra04G0030100 Salix brachista HOM05D007507 ORTHO05D009420 2.2e-11 72.8 101 46.5
Gohir.A05G159400 Gossypium hirsutum HOM05D007507 ORTHO05D009420 4.8e-11 71.6 104 45.2
MBI07_g29118_MAGBIO Magnolia biondii HOM05D007507 ORTHO05D009420 4.8e-11 71.6 126 39.7
Duzib192G0611 Durio zibethinus HOM05D007507 ORTHO05D009420 6.3e-11 71.2 113 43.4
Psat7g115600 Pisum sativum HOM05D007507 ORTHO05D009420 6.3e-11 71.2 128 38.3
Potri.011G057400 Populus trichocarpa HOM05D007507 ORTHO05D009420 6.3e-11 71.2 132 40.2
PGSC0003DMG400031763 Solanum tuberosum HOM05D007507 ORTHO05D009420 6.3e-11 71.2 100 43.0
Gohir.D06G135900 Gossypium hirsutum HOM05D007507 ORTHO05D009420 8.2e-11 70.9 113 41.6
Rhsim13G0180100 Rhododendron simsii HOM05D007507 ORTHO05D009420 8.2e-11 70.9 83 43.4
Sopen02g022610 Solanum pennellii HOM05D007507 ORTHO05D009420 1.1e-10 70.5 100 46.0
CANSAT35G2017 Cannabis sativa HOM05D007507 ORTHO05D009420 1.4e-10 70.1 122 36.1
Manes.17G048900 Manihot esculenta HOM05D007507 ORTHO05D009420 1.4e-10 70.1 103 43.7
Solyc02g077720.4 Solanum lycopersicum HOM05D007507 ORTHO05D009420 1.4e-10 70.1 100 46.0
Ciclev10016932m.g Citrus clementina HOM05D007507 ORTHO05D009420 3.1e-10 68.9 130 41.5
DCAR_004049 Daucus carota HOM05D007507 ORTHO05D009420 5.3e-10 68.2 120 37.5
Phvul.006G182800 Phaseolus vulgaris HOM05D007507 ORTHO05D009420 5.3e-10 68.2 100 47.0
Dinv17350 Davidia involucrata HOM05D007507 ORTHO05D009420 6.9e-10 67.8 127 37.0
Gorai.010G158100 Gossypium raimondii HOM05D007507 ORTHO05D009420 6.9e-10 67.8 113 39.8
Nitab4.5_0007893g0030 Nicotiana tabacum HOM05D007507 ORTHO05D009420 1.2e-09 67.0 129 36.4
Cpa.g.sc27.9 Carica papaya HOM05D007507 ORTHO05D009420 2.0e-09 66.2 99 41.4
Atru.chr10.1803 Acer truncatum HOM05D007507 ORTHO05D009420 5.9e-09 64.7 134 37.3
Migut.M01111 Erythranthe guttata HOM05D007507 ORTHO05D009420 5.9e-09 64.7 98 42.9
Nitab4.5_0002813g0060 Nicotiana tabacum HOM05D007507 ORTHO05D009420 1.0e-08 63.9 126 35.7
Oeu027697.1 Olea europaea HOM05D007507 ORTHO05D009420 1.0e-08 63.9 102 43.1
DCAR_008007 Daucus carota HOM05D007507 ORTHO05D009420 1.3e-08 63.5 128 39.8
PGR042G2392 Punica granatum HOM05D007507 ORTHO05D009420 1.3e-08 63.5 101 41.6
VMungo0540G0304 Vigna mungo HOM05D007507 ORTHO05D009420 1.3e-08 63.5 101 40.6
TWI38G1903 Tripterygium wilfordii HOM05D007507 ORTHO05D009420 1.7e-08 63.2 97 45.4
Gohir.A09G073500 Gossypium hirsutum HOM05D007507 ORTHO05D009420 2.2e-08 62.8 127 36.2
Manes.16G031300 Manihot esculenta HOM05D007507 ORTHO05D009420 2.9e-08 62.4 105 38.1
Oeu015676.1 Olea europaea HOM05D007507 ORTHO05D009420 2.9e-08 62.4 97 42.3
Oeu064800.1 Olea europaea HOM05D007507 ORTHO05D009420 2.9e-08 62.4 100 41.0
Atru.chr10.1804 Acer truncatum HOM05D007507 ORTHO05D009420 3.8e-08 62.0 130 39.2
arahy.Tifrunner.gnm1.ann1.XNU6AG Arachis hypogaea HOM05D007507 ORTHO05D009420 3.8e-08 62.0 102 39.2
Nn1g04226 Nelumbo nucifera HOM05D007507 ORTHO05D009420 3.8e-08 62.0 87 46.0
Gohir.D09G073200 Gossypium hirsutum HOM05D007507 ORTHO05D009420 5.0e-08 61.6 114 36.0
Gorai.006G088200 Gossypium raimondii HOM05D007507 ORTHO05D009420 5.0e-08 61.6 114 36.0
Eucgr.E03247 Eucalyptus grandis HOM05D007507 ORTHO05D009420 6.5e-08 61.2 128 35.9
Psat1g203160 Pisum sativum HOM05D007507 ORTHO05D009420 6.5e-08 61.2 107 38.3
Lj4g0010126 Lotus japonicus HOM05D007507 ORTHO05D009420 1.1e-07 60.5 106 36.8
arahy.Tifrunner.gnm1.ann1.26E61A Arachis hypogaea HOM05D007507 ORTHO05D009420 2.5e-07 59.3 94 41.5
MSTRG.14710 Avicennia marina HOM05D007507 ORTHO05D009420 2.5e-07 59.3 97 45.4
ECA236G3296 Erigeron canadensis HOM05D007507 ORTHO05D009420 5.5e-07 58.2 39 76.9
PSO675G6999 Papaver somniferum HOM05D007507 ORTHO05D009420 6.1e-06 54.7 121 37.2
SalBow8G4682 Salvia bowleyana HOM05D007507 ORTHO05D009420 6.1e-06 54.7 94 38.3


User provided reference genes

Program Settings