Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007262.2 Cucumis melo HOM05D007882 ORTHO05D009870 9.1e-95 350.1 166 100.0
ClCG00G004760 Citrullus lanatus HOM05D007882 ORTHO05D009870 6.8e-82 307.4 155 92.3
ClCG01G023240 Citrullus lanatus HOM05D007882 ORTHO05D009870 6.8e-82 307.4 155 92.3
CsaV3_6G050400 Cucumis sativus L. HOM05D007882 ORTHO05D009870 3.7e-72 275.0 131 96.9
Sed0022369 Sechium edule HOM05D007882 ORTHO05D009870 1.6e-67 259.6 156 78.2
TWI38G0780 Tripterygium wilfordii HOM05D007882 ORTHO05D009870 3.5e-62 241.9 154 72.1
CSS0041544 Camellia sinensis var. sinensis HOM05D007882 ORTHO05D009870 4.6e-62 241.5 150 73.3
Manes.17G049100 Manihot esculenta HOM05D007882 ORTHO05D009870 1.9e-60 236.1 155 69.0
QL05p042203 Quercus lobata HOM05D007882 ORTHO05D009870 1.6e-59 233.0 153 71.9
Haze_06385 Corylus avellana HOM05D007882 ORTHO05D009870 2.1e-59 232.6 157 68.8
Duzib235G1325 Durio zibethinus HOM05D007882 ORTHO05D009870 4.7e-59 231.5 154 69.5
Sabra04G0030400 Salix brachista HOM05D007882 ORTHO05D009870 6.2e-59 231.1 158 67.1
Prupe.4G052300 Prunus persica HOM05D007882 ORTHO05D009870 1.1e-58 230.3 150 68.0
Manes.16G031800 Manihot esculenta HOM05D007882 ORTHO05D009870 8.9e-58 227.3 151 68.2
Potri.004G048400 Populus trichocarpa HOM05D007882 ORTHO05D009870 8.9e-58 227.3 154 67.5
Cfa000524 Carpinus fangiana HOM05D007882 ORTHO05D009870 1.5e-57 226.5 150 70.7
Nn1g06425 Nelumbo nucifera HOM05D007882 ORTHO05D009870 2.0e-57 226.1 152 67.8
Atru.chr10.1801 Acer truncatum HOM05D007882 ORTHO05D009870 4.4e-57 224.9 154 66.9
Cc02_g13810 Coffea canephora HOM05D007882 ORTHO05D009870 4.4e-57 224.9 149 67.8
Gohir.A05G159200 Gossypium hirsutum HOM05D007882 ORTHO05D009870 4.4e-57 224.9 154 67.5
Gorai.009G166900 Gossypium raimondii HOM05D007882 ORTHO05D009870 4.4e-57 224.9 154 67.5
Thecc.06G181400 Theobroma cacao HOM05D007882 ORTHO05D009870 1.7e-56 223.0 154 66.2
CiPaw.10G052500 Carya illinoinensis HOM05D007882 ORTHO05D009870 4.9e-56 221.5 150 66.7
COL.COLO4_31420 Corchorus olitorius HOM05D007882 ORTHO05D009870 8.4e-56 220.7 150 68.0
MD10G1289500 Malus domestica HOM05D007882 ORTHO05D009870 8.4e-56 220.7 149 69.1
Nitab4.5_0004359g0010 Nicotiana tabacum HOM05D007882 ORTHO05D009870 1.9e-55 219.5 152 63.8
RcHm_v2.0_Chr5g0009121 Rosa chinensis HOM05D007882 ORTHO05D009870 6.0e-54 214.5 149 65.1
FvH4_3g08670 Fragaria vesca HOM05D007882 ORTHO05D009870 7.8e-54 214.2 149 65.8
Ciclev10017073m.g Citrus clementina HOM05D007882 ORTHO05D009870 1.0e-53 213.8 152 61.2
Gohir.D05G161900 Gossypium hirsutum HOM05D007882 ORTHO05D009870 1.3e-53 213.4 147 67.3
FAN11G2645 Fragaria x ananassa HOM05D007882 ORTHO05D009870 2.3e-53 212.6 149 65.1
TAR627G1093 Trochodendron aralioides HOM05D007882 ORTHO05D009870 2.3e-53 212.6 150 65.3
FAN21G3311 Fragaria x ananassa HOM05D001455 ORTHO05D001587 3.0e-53 212.2 149 65.1
CAN.G529.52 Capsicum annuum HOM05D007882 ORTHO05D009870 5.1e-53 211.5 150 61.3
FAN16G0532 Fragaria x ananassa HOM05D007882 ORTHO05D009870 5.1e-53 211.5 149 64.4
Rhsim02G0134400 Rhododendron simsii HOM05D007882 ORTHO05D009870 2.5e-52 209.1 149 65.1
Medtr2g014430 Medicago truncatula HOM05D007882 ORTHO05D009870 1.3e-51 206.8 155 61.9
Oeu012151.1 Olea europaea HOM05D007882 ORTHO05D009870 1.6e-51 206.5 149 62.4
SalBow8G2967 Salvia bowleyana HOM05D007882 ORTHO05D009870 2.1e-51 206.1 157 61.8
SalBow8G3626 Salvia bowleyana HOM05D007882 ORTHO05D009870 2.1e-51 206.1 157 61.8
TPR.G789 Trifolium pratense HOM05D007882 ORTHO05D009870 4.8e-51 204.9 155 59.4
Psat1g202760 Pisum sativum HOM05D007882 ORTHO05D009870 2.4e-50 202.6 155 58.7
PGR004G2459 Punica granatum HOM05D007882 ORTHO05D009870 3.1e-50 202.2 151 62.3
CANSAT35G1953 Cannabis sativa HOM05D007882 ORTHO05D009870 4.0e-50 201.8 149 62.4
Lj6g0021640 Lotus japonicus HOM05D007882 ORTHO05D009870 4.0e-50 201.8 155 60.6
arahy.Tifrunner.gnm1.ann1.CPZJ30 Arachis hypogaea HOM05D007882 ORTHO05D009870 6.9e-50 201.1 154 61.0
Eucgr.D00598 Eucalyptus grandis HOM05D007882 ORTHO05D009870 4.4e-49 198.4 154 60.4
SGA_v2.0_scaffold22G09668 Striga asiatica HOM05D007882 ORTHO05D009870 7.6e-49 197.6 154 59.7
Aqoxy4G00631 Aquilegia oxysepala HOM05D007882 ORTHO05D009870 9.9e-49 197.2 158 59.5
Lalb_Chr18g0059401 Lupinus albus HOM05D007882 ORTHO05D009870 4.9e-48 194.9 156 59.6
Migut.M01110 Erythranthe guttata HOM05D007882 ORTHO05D009870 1.1e-47 193.7 150 62.0
Aa31LG9G13760 Aethionema arabicum HOM05D007882 ORTHO05D009870 1.4e-47 193.4 149 59.1
PSO210G4689 Papaver somniferum HOM05D007882 ORTHO05D009870 1.9e-47 193.0 156 57.7
PSO210G1466 Papaver somniferum HOM05D007882 ORTHO05D009870 3.5e-46 188.7 156 57.7
C04p63420 Brassica napus HOM05D007882 ORTHO05D009870 3.9e-45 185.3 150 59.3
BolC4t27817H Brassica oleracea HOM05D007882 ORTHO05D009870 3.9e-45 185.3 150 59.3
THA.LOC104820567 Tarenaya hassleriana HOM05D007882 ORTHO05D009870 8.7e-45 184.1 152 58.6
Sp4g16270 Schrenkiella parvula HOM05D007882 ORTHO05D009870 1.1e-44 183.7 150 59.3
A04p26080 Brassica napus HOM05D007882 ORTHO05D009870 1.5e-44 183.3 150 58.7
BraA04t18110Z Brassica rapa HOM05D007882 ORTHO05D009870 1.5e-44 183.3 150 58.7
HanXRQChr01g0014401 Helianthus annuus HOM05D007882 ORTHO05D009870 1.9e-44 183.0 151 56.3
DCAR_028056 Daucus carota HOM05D007882 ORTHO05D009870 2.1e-43 179.5 151 58.3
CARHR128020 Cardamine hirsuta HOM05D007882 ORTHO05D009870 6.2e-43 177.9 150 55.3
Thhalv10017644m.g Eutrema salsugineum HOM05D007882 ORTHO05D009870 8.1e-43 177.6 150 57.3
Glyma.13G235900 Glycine max HOM05D007882 ORTHO05D009870 1.1e-42 177.2 155 54.2
Dinv40598 Davidia involucrata HOM05D007882 ORTHO05D009870 1.8e-42 176.4 118 70.3
unitig_22.g6219 Utricularia gibba HOM05D007882 ORTHO05D009870 1.8e-42 176.4 153 55.6
Solyc02g077700.1 Solanum lycopersicum HOM05D007882 ORTHO05D009870 9.0e-42 174.1 150 52.0
AL4G29660 Arabidopsis lyrata HOM05D007882 ORTHO05D009870 1.5e-41 173.3 150 54.7
PGSC0003DMG400031764 Solanum tuberosum HOM05D007882 ORTHO05D009870 1.5e-41 173.3 150 52.0
AT2G33855 Arabidopsis thaliana HOM05D007882 ORTHO05D009870 4.5e-41 171.8 150 55.3
Carub.0004s1556 Capsella rubella HOM05D007882 ORTHO05D009870 2.2e-40 169.5 150 54.7
Phvul.006G182500 Phaseolus vulgaris HOM05D007882 ORTHO05D009870 3.8e-40 168.7 155 52.9
Nitab4.5_0001955g0180 Nicotiana tabacum HOM05D007882 ORTHO05D009870 6.4e-40 167.9 111 65.8
MBI04_g06226_MAGBIO Magnolia biondii HOM05D007882 ORTHO05D009870 2.4e-39 166.0 157 53.5
ATR0789G148 Amborella trichopoda HOM05D007882 ORTHO05D009870 4.2e-39 165.2 157 50.3
Ah.14g089690 Amaranthus hybridus HOM05D007882 ORTHO05D009870 3.5e-38 162.2 119 62.2
Lsat_1_v5_gn_4_51820 Lactuca sativa HOM05D000216 ORTHO05D009870 2.4e-34 149.4 125 56.8
HPP92_022798 Vanilla planifolia HOM05D007882 ORTHO05D009870 1.4e-26 123.6 145 42.8
Nn1g04229 Nelumbo nucifera HOM05D007882 ORTHO05D009870 2.0e-25 119.8 102 57.8
QL06p028733 Quercus lobata HOM05D007882 ORTHO05D009870 5.5e-23 111.7 98 59.2
Zm00001eb079820 Zea mays HOM05D007882 ORTHO05D009870 1.9e-20 103.2 147 38.8
Os04g0475300 Oryza sativa ssp. japonica HOM05D007882 ORTHO05D009870 9.0e-18 94.4 150 34.7
Cpa.g.sc27.7 Carica papaya HOM05D007882 ORTHO05D009870 6.1e-14 81.6 54 68.5
Sc17g0005950 Simmondsia chinensis HOM05D007447 ORTHO05D009372 2.2e-11 73.2 62 48.4
BcaC02g07777 Brassica carinata HOM05D007882 ORTHO05D009870 8.2e-11 71.2 56 55.4
Pp3c24_16730 Physcomitrium patens HOM05D031660 ORTHO05D009870 6.5e-08 61.6 84 38.1


User provided reference genes

Program Settings