Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007230.2 Cucumis melo HOM05D007489 ORTHO05D008037 0.0e+00 1484.5 782 100.0
CsaV3_6G050690 Cucumis sativus L. HOM05D007489 ORTHO05D008037 0.0e+00 1093.6 859 73.0
ClCG01G023550 Citrullus lanatus HOM05D007489 ORTHO05D008037 0.0e+00 1083.2 773 78.9
Sed0003654 Sechium edule HOM05D007489 ORTHO05D008037 1.7e-260 902.9 792 65.8
Prupe.4G057700 Prunus persica HOM05D007489 ORTHO05D008037 8.4e-90 335.9 777 36.3
CSS0034374 Camellia sinensis var. sinensis HOM05D007489 ORTHO05D008037 1.5e-78 298.5 831 32.0
MD10G1283800 Malus domestica HOM05D007489 ORTHO05D008037 8.2e-77 292.7 800 34.6
TAR627G1016 Trochodendron aralioides HOM05D007489 ORTHO05D008037 1.0e-74 285.8 811 33.2
RcHm_v2.0_Chr7g0216741 Rosa chinensis HOM05D007489 ORTHO05D008037 4.3e-70 270.4 801 32.3
RcHm_v2.0_Chr7g0215591 Rosa chinensis HOM05D007489 ORTHO05D008037 1.6e-69 268.5 799 31.7
PGR004G0633 Punica granatum HOM05D007489 ORTHO05D008037 1.2e-67 262.3 770 31.8
Dinv40650 Davidia involucrata HOM05D007489 ORTHO05D008037 2.2e-66 258.1 787 31.8
FAN08G0692 Fragaria x ananassa HOM05D007489 ORTHO05D008037 1.6e-64 251.9 822 31.6
FAN04G2784 Fragaria x ananassa HOM05D007489 ORTHO05D008037 6.1e-64 250.0 818 31.1
Hma1.2p1_0155F.1_g068400 Hydrangea macrophylla HOM05D007489 ORTHO05D008037 1.0e-63 249.2 826 30.4
FvH4_5g26040 Fragaria vesca HOM05D007489 ORTHO05D008037 1.4e-63 248.8 799 32.0
Duzib235G0638 Durio zibethinus HOM05D007489 ORTHO05D008037 1.8e-63 248.4 823 32.0
CANSAT54G0123 Cannabis sativa HOM05D007489 ORTHO05D008037 2.0e-62 245.0 827 31.7
Duzib192G0524 Durio zibethinus HOM05D007489 ORTHO05D008037 1.1e-60 239.2 808 31.8
Gohir.D10G031400 Gossypium hirsutum HOM05D007489 ORTHO05D008037 2.0e-59 235.0 831 31.6
Thecc.06G175600 Theobroma cacao HOM05D007489 ORTHO05D008037 1.0e-58 232.6 776 31.3
FAN18G0613 Fragaria x ananassa HOM05D007489 ORTHO05D008037 1.7e-58 231.9 817 31.0
Glyma.07G204500 Glycine max HOM05D007489 ORTHO05D008037 2.2e-58 231.5 819 30.2
Ca_26049_v3 Cicer arietinum L. HOM05D007489 ORTHO05D008037 4.2e-57 227.3 772 30.7
Rhsim02G0140400 Rhododendron simsii HOM05D007489 ORTHO05D008037 1.2e-56 225.7 855 30.1
TPR.G16271 Trifolium pratense HOM05D007489 ORTHO05D008037 1.6e-56 225.3 822 30.3
Aqoxy5G02160 Aquilegia oxysepala HOM05D007489 ORTHO05D008037 3.6e-56 224.2 792 31.2
Haze_06275 Corylus avellana HOM05D007489 ORTHO05D008037 7.9e-56 223.0 839 29.7
CiPaw.10G057000 Carya illinoinensis HOM05D007489 ORTHO05D008037 5.1e-55 220.3 442 39.6
Lj4g0021888 Lotus japonicus HOM05D007489 ORTHO05D008037 2.6e-54 218.0 824 29.2
Phvul.003G057800 Phaseolus vulgaris HOM05D007489 ORTHO05D008037 4.4e-54 217.2 832 29.8
Gorai.011G033000 Gossypium raimondii HOM05D007489 ORTHO05D008037 5.7e-54 216.9 814 31.0
Potri.011G063500 Populus trichocarpa HOM05D007489 ORTHO05D008037 7.4e-54 216.5 794 31.0
Manes.16G035700 Manihot esculenta HOM05D007489 ORTHO05D008037 2.8e-53 214.5 973 28.9
Medtr4g087875 Medicago truncatula HOM05D007489 ORTHO05D008037 4.8e-53 213.8 825 29.6
Nn1g09012 Nelumbo nucifera HOM05D007489 ORTHO05D008037 8.2e-53 213.0 773 30.3
arahy.Tifrunner.gnm1.ann1.S0ULK2 Arachis hypogaea HOM05D007489 ORTHO05D008037 1.4e-52 212.2 812 28.8
Sabra11G0045300 Salix brachista HOM05D007489 ORTHO05D008037 3.5e-51 207.6 838 29.7
Sc05g0007220 Simmondsia chinensis HOM05D007489 ORTHO05D008037 5.9e-51 206.8 854 27.9
CAN.G79.55 Capsicum annuum HOM05D007489 ORTHO05D008037 5.2e-47 193.7 822 29.7
Gohir.A10G030500 Gossypium hirsutum HOM05D007489 ORTHO05D008037 5.2e-47 193.7 791 29.5
FAN13G1982 Fragaria x ananassa HOM05D007489 ORTHO05D008037 2.0e-43 181.8 874 26.8
ECA234G3308 Erigeron canadensis HOM05D007489 ORTHO05D008037 3.8e-42 177.6 828 28.6
arahy.Tifrunner.gnm1.ann1.X1E7Z2 Arachis hypogaea HOM05D007489 ORTHO05D008037 6.5e-42 176.8 749 29.2
Lj1A1196T41 Lonicera japonica HOM05D007489 ORTHO05D008037 1.1e-41 176.0 783 28.2
PSO063G1126 Papaver somniferum HOM05D007489 ORTHO05D008037 5.5e-41 173.7 942 26.8
Sopen02g022090 Solanum pennellii HOM05D007489 ORTHO05D008037 5.5e-41 173.7 861 27.2
Lsat_1_v5_gn_4_50401 Lactuca sativa HOM05D007489 ORTHO05D008037 1.6e-40 172.2 826 27.7
COL.COLO4_31347 Corchorus olitorius HOM05D007489 ORTHO05D008037 4.8e-37 160.6 156 55.1
Nitab4.5_0001928g0060 Nicotiana tabacum HOM05D007489 ORTHO05D008037 6.3e-37 160.2 808 27.4
AL7G35790 Arabidopsis lyrata HOM05D010718 ORTHO05D008037 2.7e-35 154.8 821 27.3
Atru.chr10.1727 Acer truncatum HOM05D007489 ORTHO05D008037 2.2e-34 151.8 727 26.1
CARHR225330 Cardamine hirsuta HOM05D010718 ORTHO05D008037 1.2e-32 146.0 835 25.7
Os01g0755100 Oryza sativa ssp. japonica HOM05D007489 ORTHO05D008037 1.6e-32 145.6 772 26.4
Aa31LG6G1240 Aethionema arabicum HOM05D010718 ORTHO05D008037 1.0e-31 142.9 759 26.6
AUR62036546 Chenopodium quinoa HOM05D007489 ORTHO05D008037 1.0e-31 142.9 812 26.7
HanXRQChr11g0327141 Helianthus annuus HOM05D007489 ORTHO05D008037 1.4e-31 142.5 758 26.6
Thhalv10024499m.g Eutrema salsugineum HOM05D010718 ORTHO05D008037 5.2e-31 140.6 782 26.6
GSVIVG01021171001 Vitis vinifera HOM05D007489 ORTHO05D008037 2.0e-30 138.7 252 41.7
QL05p044409 Quercus lobata HOM05D007489 ORTHO05D008037 3.4e-30 137.9 302 37.1
EL10Ac8g20488 Beta vulgaris HOM05D007489 ORTHO05D008037 4.4e-30 137.5 846 25.4
Migut.J01535 Erythranthe guttata HOM05D007489 ORTHO05D008037 4.4e-30 137.5 715 26.6
ATR0602G208 Amborella trichopoda HOM05D007489 ORTHO05D008037 8.3e-29 133.3 739 26.8
AT4G18490 Arabidopsis thaliana HOM05D010718 ORTHO05D008037 1.8e-28 132.1 811 25.6
Lalb_Chr16g0384211 Lupinus albus HOM05D007489 ORTHO05D008037 2.4e-28 131.7 215 40.9
Hund23951 Selenicereus undatus HOM05D007489 ORTHO05D008037 3.1e-28 131.3 183 47.0
Sp7g15530 Schrenkiella parvula HOM05D010718 ORTHO05D008037 5.4e-28 130.6 852 25.0
Zm00001eb152860 Zea mays HOM05D007489 ORTHO05D008037 2.7e-27 128.3 757 26.7
PGR004G2208 Punica granatum HOM05D007489 ORTHO05D008037 8.6e-26 123.2 125 55.2
VMungo0251G2273 Vigna mungo HOM05D007489 ORTHO05D008037 2.5e-25 121.7 207 39.6
A03p51330 Brassica napus HOM05D010718 ORTHO05D008037 5.6e-25 120.6 841 25.2
BcaC06g30581 Brassica carinata HOM05D010718 ORTHO05D008037 1.2e-24 119.4 803 24.3
Oeu041109.2 Olea europaea HOM05D007489 ORTHO05D008037 1.8e-23 115.5 890 24.8
MD05G1304800 Malus domestica HOM05D007489 ORTHO05D008037 2.2e-21 108.6 426 30.8
Glyma.13G171550 Glycine max HOM05D007489 ORTHO05D008037 3.7e-21 107.8 147 44.9
Nitab4.5_0000376g0220 Nicotiana tabacum HOM05D007489 ORTHO05D008037 1.8e-20 105.5 745 25.2
A01p10500 Brassica napus HOM05D010718 ORTHO05D008037 9.2e-20 103.2 879 24.6
DCAR_007972 Daucus carota HOM05D007489 ORTHO05D008037 4.6e-19 100.9 103 53.4
Ciclev10017982m.g Citrus clementina HOM05D007489 ORTHO05D008037 1.3e-18 99.4 84 60.7
SalBow6G6000 Salvia bowleyana HOM05D007489 ORTHO05D008037 1.7e-18 99.0 852 24.1
MBI06_g31402_MAGBIO Magnolia biondii HOM05D007489 ORTHO05D008037 5.0e-18 97.4 454 28.2
DCAR_004024 Daucus carota HOM05D007489 ORTHO05D008037 8.6e-18 96.7 305 29.5
Solyc02g077210.1 Solanum lycopersicum HOM05D007489 ORTHO05D008037 8.6e-18 96.7 227 35.7
BraA01t00996Z Brassica rapa HOM05D010718 ORTHO05D008037 3.3e-17 94.7 875 25.1
MD05G1304700 Malus domestica HOM05D007489 ORTHO05D008037 3.3e-17 94.7 155 40.6
SalBow6G3268 Salvia bowleyana HOM05D007489 ORTHO05D008037 3.3e-17 94.7 854 23.9
unitig_0.g132 Utricularia gibba HOM05D007489 ORTHO05D008037 1.2e-16 92.8 342 26.3
MBI06_g31401_MAGBIO Magnolia biondii HOM05D007489 ORTHO05D008037 2.8e-16 91.7 106 45.3
BraA03t14214Z Brassica rapa HOM05D010718 ORTHO05D008037 3.6e-16 91.3 835 24.0
Carub.0007s2274 Capsella rubella HOM05D010718 ORTHO05D008037 4.7e-16 90.9 363 32.2
C01p12440 Brassica napus HOM05D010718 ORTHO05D008037 1.8e-15 89.0 882 23.2
C07p49740 Brassica napus HOM05D010718 ORTHO05D008037 5.2e-15 87.4 812 24.8
SEGI_30603 Sequoiadendron giganteum HOM05D007489 ORTHO05D008037 5.2e-15 87.4 142 38.0
Peaxi162Scf00223g01419 Petunia axillaris HOM05D007489 ORTHO05D008037 2.6e-14 85.1 180 37.8
Peaxi162Scf00223g01422 Petunia axillaris HOM05D007489 ORTHO05D008037 7.5e-14 83.6 93 49.5
Aqoxy534s001 Aquilegia oxysepala HOM05D007489 ORTHO05D008037 4.1e-12 77.8 112 45.5
BcaNung02709 Brassica carinata HOM05D010718 ORTHO05D008037 9.2e-12 76.6 813 23.6
HPP92_008016 Vanilla planifolia HOM05D007489 ORTHO05D008037 9.2e-12 76.6 749 24.0
PSO782G2467 Papaver somniferum HOM05D007489 ORTHO05D008037 2.7e-11 75.1 220 34.1
HPP92_007965 Vanilla planifolia HOM05D007489 ORTHO05D008037 2.7e-11 75.1 735 23.5
BolC7t45475H Brassica oleracea HOM05D010718 ORTHO05D008037 3.5e-11 74.7 711 25.5
AUR62031141 Chenopodium quinoa HOM05D007489 ORTHO05D008037 3.0e-10 71.6 273 28.6
Cpa.g.sc7.37 Carica papaya HOM05D007489 ORTHO05D008037 9.5e-09 66.6 379 27.7
SalBow2G2687 Salvia bowleyana HOM05D007489 ORTHO05D008037 1.2e-08 66.2 64 43.8
arahy.Tifrunner.gnm1.ann1.8IS92U Arachis hypogaea HOM05D007489 ORTHO05D008037 1.4e-07 62.8 65 52.3
BolC1t01218H Brassica oleracea HOM05D010718 ORTHO05D008037 1.4e-07 62.8 123 37.4
SalBow1G4805 Salvia bowleyana HOM05D007489 ORTHO05D008037 1.4e-07 62.8 64 42.2
SGA_v2.0_scaffold66G22379 Striga asiatica HOM05D007489 ORTHO05D008037 1.4e-07 62.8 831 21.2
Glyma.13G171600 Glycine max HOM05D007489 ORTHO05D008037 1.8e-07 62.4 243 30.0
SMO340G0226 Selaginella moellendorffii HOM05D029666 ORTHO05D008037 3.1e-07 61.6 60 53.3
SMO356G0683 Selaginella moellendorffii HOM05D029666 ORTHO05D008037 3.1e-07 61.6 60 53.3
QL05p044176 Quercus lobata HOM05D007489 ORTHO05D008037 5.2e-07 60.8 136 36.8


User provided reference genes

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