Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007199.2 Cucumis melo HOM05D005007 ORTHO05D006053 2.6e-52 208.4 101 100.0
CsaV3_6G051040 Cucumis sativus L. HOM05D005007 ORTHO05D006053 1.7e-51 205.7 101 99.0
ClCG01G023890 Citrullus lanatus HOM05D005007 ORTHO05D006053 2.1e-38 162.2 99 84.8
Sed0017213 Sechium edule HOM05D005007 ORTHO05D006053 1.4e-29 132.9 99 68.7
Sed0011988 Sechium edule HOM05D005007 ORTHO05D006053 1.0e-27 126.7 103 66.0
Prupe.4G066600 Prunus persica HOM05D005007 ORTHO05D006053 5.9e-20 100.9 88 54.5
GSVIVG01021255001 Vitis vinifera HOM05D005007 ORTHO05D006053 7.7e-20 100.5 94 54.3
CiPaw.09G137100 Carya illinoinensis HOM05D005007 ORTHO05D006053 2.2e-19 99.0 106 50.9
QL05p049974 Quercus lobata HOM05D005007 ORTHO05D006053 2.2e-19 99.0 90 51.1
Sabra11G0055100 Salix brachista HOM05D005007 ORTHO05D006053 1.4e-18 96.3 85 54.1
Potri.004G061100 Populus trichocarpa HOM05D005007 ORTHO05D006053 1.9e-18 95.9 96 51.0
Duzib192G0425 Durio zibethinus HOM05D005007 ORTHO05D006053 2.5e-18 95.5 94 48.9
Duzib160G0236 Durio zibethinus HOM05D005007 ORTHO05D006053 3.2e-18 95.1 98 48.0
MD10G1275600 Malus domestica HOM05D005007 ORTHO05D006053 4.2e-18 94.7 86 51.2
RcHm_v2.0_Chr5g0011631 Rosa chinensis HOM05D005007 ORTHO05D006053 9.4e-18 93.6 87 54.0
MD00G1009400 Malus domestica HOM05D005007 ORTHO05D006053 1.2e-17 93.2 76 57.9
MD05G1295500 Malus domestica HOM05D005007 ORTHO05D006053 1.2e-17 93.2 76 57.9
Haze_05357 Corylus avellana HOM05D005007 ORTHO05D006053 3.6e-17 91.7 84 50.0
Potri.011G070400 Populus trichocarpa HOM05D005007 ORTHO05D006053 4.7e-17 91.3 86 51.2
Dinv12754 Davidia involucrata HOM05D005007 ORTHO05D006053 1.4e-16 89.7 93 51.6
Lalb_Chr13g0295281 Lupinus albus HOM05D005007 ORTHO05D006053 1.4e-16 89.7 86 48.8
Sabra04G0040400 Salix brachista HOM05D005007 ORTHO05D006053 1.8e-16 89.4 91 48.4
Thecc.06G165800 Theobroma cacao HOM05D005007 ORTHO05D006053 2.3e-16 89.0 95 47.4
Lalb_Chr03g0031211 Lupinus albus HOM05D005007 ORTHO05D006053 3.9e-16 88.2 86 48.8
Gohir.A06G133600 Gossypium hirsutum HOM05D005007 ORTHO05D006053 5.1e-16 87.8 81 50.6
Atru.chr10.1572 Acer truncatum HOM05D005007 ORTHO05D006053 6.7e-16 87.4 90 47.8
Actinidia39520 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.1e-15 86.7 87 48.3
Ca_17898_v3 Cicer arietinum L. HOM05D005007 ORTHO05D006053 1.1e-15 86.7 81 53.1
FvH4_3g07320 Fragaria vesca HOM05D005007 ORTHO05D006053 1.1e-15 86.7 82 50.0
FAN11G0120 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.1e-15 86.7 82 50.0
Gohir.D06G138700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.1e-15 86.7 81 50.6
COL.COLO4_31238 Corchorus olitorius HOM05D005007 ORTHO05D006053 1.5e-15 86.3 93 47.3
Gorai.010G161300 Gossypium raimondii HOM05D005007 ORTHO05D006053 1.5e-15 86.3 81 50.6
Oeu039881.1 Olea europaea HOM05D005007 ORTHO05D006053 1.5e-15 86.3 84 50.0
Sabra11G0058300 Salix brachista HOM05D005007 ORTHO05D006053 1.5e-15 86.3 74 52.7
MBI06_g18688_MAGBIO Magnolia biondii HOM05D005007 ORTHO05D006053 2.0e-15 85.9 90 47.8
FAN21G0366 Fragaria x ananassa HOM05D005007 ORTHO05D006053 2.6e-15 85.5 69 55.1
TWI09G0208 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 2.6e-15 85.5 77 50.6
PGR042G3787 Punica granatum HOM05D005007 ORTHO05D006053 4.4e-15 84.7 86 50.0
SalBow7G2341 Salvia bowleyana HOM05D005007 ORTHO05D006053 4.4e-15 84.7 87 49.4
Cpa.g.sc7.108 Carica papaya HOM05D005007 ORTHO05D006053 5.7e-15 84.3 91 44.0
Glyma.08G118300 Glycine max HOM05D005007 ORTHO05D006053 5.7e-15 84.3 93 43.0
HanXRQChr02g0038411 Helianthus annuus HOM05D005007 ORTHO05D006053 5.7e-15 84.3 85 50.6
Manes.16G043000 Manihot esculenta HOM05D005007 ORTHO05D006053 5.7e-15 84.3 85 48.2
Lalb_Chr01g0006861 Lupinus albus HOM05D005007 ORTHO05D006053 7.4e-15 84.0 69 55.1
QL08p025919 Quercus lobata HOM05D005007 ORTHO05D006053 7.4e-15 84.0 85 45.9
Ciclev10022947m.g Citrus clementina HOM05D005007 ORTHO05D006053 9.7e-15 83.6 92 47.8
Manes.15G095801 Manihot esculenta HOM05D005007 ORTHO05D006053 9.7e-15 83.6 63 58.7
Dinv32340 Davidia involucrata HOM05D005007 ORTHO05D006053 1.3e-14 83.2 93 49.5
FAN16G2723 Fragaria x ananassa HOM05D005007 ORTHO05D006053 1.3e-14 83.2 82 48.8
Oeu060171.1 Olea europaea HOM05D005007 ORTHO05D006053 1.3e-14 83.2 77 49.4
CiPaw.12G113100 Carya illinoinensis HOM05D005007 ORTHO05D006053 1.7e-14 82.8 93 46.2
Ciclev10017907m.g Citrus clementina HOM05D005007 ORTHO05D006053 1.7e-14 82.8 68 55.9
Migut.H01413 Erythranthe guttata HOM05D005007 ORTHO05D006053 1.7e-14 82.8 83 45.8
Glyma.05G160900 Glycine max HOM05D005007 ORTHO05D006053 2.2e-14 82.4 93 43.0
Gohir.D01G042700 Gossypium hirsutum HOM05D005007 ORTHO05D006053 2.2e-14 82.4 90 45.6
Lsat_1_v5_gn_7_25701 Lactuca sativa HOM05D005007 ORTHO05D006053 2.2e-14 82.4 81 48.1
Thecc.07G118400 Theobroma cacao HOM05D005007 ORTHO05D006053 2.2e-14 82.4 89 47.2
Hma1.2p1_0934F.1_g238510 Hydrangea macrophylla HOM05D005007 ORTHO05D006053 2.8e-14 82.0 89 47.2
RcHm_v2.0_Chr5g0030711 Rosa chinensis HOM05D005007 ORTHO05D006053 2.8e-14 82.0 85 49.4
EL10Ac4g08365 Beta vulgaris HOM05D005007 ORTHO05D006053 3.7e-14 81.6 99 48.5
AUR62039477 Chenopodium quinoa HOM05D005007 ORTHO05D006053 3.7e-14 81.6 87 46.0
Gorai.002G053600 Gossypium raimondii HOM05D005007 ORTHO05D006053 3.7e-14 81.6 90 44.4
CSS0026874 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 4.8e-14 81.3 96 44.8
Medtr8g087320 Medicago truncatula HOM05D005007 ORTHO05D006053 4.8e-14 81.3 71 54.9
DCAR_003989 Daucus carota HOM05D005007 ORTHO05D006053 6.3e-14 80.9 78 48.7
Duzib235G0435 Durio zibethinus HOM05D005007 ORTHO05D006053 6.3e-14 80.9 87 44.8
FAN25G2704 Fragaria x ananassa HOM05D005007 ORTHO05D006053 6.3e-14 80.9 90 47.8
BcaB04g18501 Brassica carinata HOM05D005007 ORTHO05D006053 8.2e-14 80.5 95 43.2
Phvul.011G165600 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 8.2e-14 80.5 86 48.8
Rhsim06G0209000 Rhododendron simsii HOM05D005007 ORTHO05D006053 8.2e-14 80.5 66 60.6
C03p81500 Brassica napus HOM05D005007 ORTHO05D006053 1.4e-13 79.7 70 51.4
BolC3t20421H Brassica oleracea HOM05D005007 ORTHO05D006053 1.4e-13 79.7 70 51.4
Glyma.12G156400 Glycine max HOM05D005007 ORTHO05D006053 1.4e-13 79.7 86 46.5
Manes.17G059100 Manihot esculenta HOM05D005007 ORTHO05D006053 1.4e-13 79.7 89 44.9
Phvul.002G241000 Phaseolus vulgaris HOM05D005007 ORTHO05D006053 1.4e-13 79.7 88 47.7
VMungo1127G1862 Vigna mungo HOM05D005007 ORTHO05D006053 1.4e-13 79.7 94 48.9
Gohir.D05G156101 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.8e-13 79.3 66 51.5
vmacro11948 Vaccinium macrocarpon HOM05D005007 ORTHO05D006053 1.8e-13 79.3 75 54.7
CARHR225660 Cardamine hirsuta HOM05D005007 ORTHO05D006053 2.4e-13 79.0 89 42.7
DCAR_007938 Daucus carota HOM05D005007 ORTHO05D006053 3.1e-13 78.6 79 46.8
Gohir.A01G053200 Gossypium hirsutum HOM05D005007 ORTHO05D006053 3.1e-13 78.6 90 43.3
Psat7g068680 Pisum sativum HOM05D005007 ORTHO05D006053 3.1e-13 78.6 81 50.6
SalBow8G4395 Salvia bowleyana HOM05D005007 ORTHO05D006053 3.1e-13 78.6 81 45.7
Cc02_g15570 Coffea canephora HOM05D005007 ORTHO05D006053 4.1e-13 78.2 95 40.0
Actinidia35601 Actinidia chinensis HOM05D005007 ORTHO05D006053 5.3e-13 77.8 81 45.7
Eucgr.F01249 Eucalyptus grandis HOM05D005007 ORTHO05D006053 5.3e-13 77.8 89 48.3
Ah.14g087010 Amaranthus hybridus HOM05D005007 ORTHO05D006053 7.0e-13 77.4 80 50.0
CDE10G0299 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 7.0e-13 77.4 76 51.3
TPR.G6805 Trifolium pratense HOM05D000213 ORTHO05D000426 7.0e-13 77.4 72 52.8
Gohir.A05G153450 Gossypium hirsutum HOM05D005007 ORTHO05D006053 1.6e-12 76.3 84 45.2
Sopen02g021150 Solanum pennellii HOM05D005007 ORTHO05D006053 1.6e-12 76.3 83 48.2
BraA08t33391Z Brassica rapa HOM05D005007 ORTHO05D006053 2.0e-12 75.9 70 50.0
CiPaw.11G159400 Carya illinoinensis HOM05D005007 ORTHO05D006053 2.0e-12 75.9 86 45.3
Migut.H01416 Erythranthe guttata HOM05D005007 ORTHO05D006053 2.0e-12 75.9 63 52.4
Prupe.4G161500 Prunus persica HOM05D005007 ORTHO05D006053 2.0e-12 75.9 53 60.4
Cpa.g.sc77.26 Carica papaya HOM05D005007 ORTHO05D006053 2.6e-12 75.5 52 63.5
arahy.Tifrunner.gnm1.ann1.HJBU6U Arachis hypogaea HOM05D005007 ORTHO05D006053 3.5e-12 75.1 65 50.8
arahy.Tifrunner.gnm1.ann1.VZS9XU Arachis hypogaea HOM05D005007 ORTHO05D006053 3.5e-12 75.1 86 43.0
Haze_09314 Corylus avellana HOM05D005007 ORTHO05D006053 3.5e-12 75.1 78 44.9
ECA236G3784 Erigeron canadensis HOM05D005007 ORTHO05D006053 3.5e-12 75.1 74 51.4
Solyc02g072170.3 Solanum lycopersicum HOM05D005007 ORTHO05D006053 3.5e-12 75.1 92 45.7
Actinidia35210 Actinidia chinensis HOM05D005007 ORTHO05D006053 4.5e-12 74.7 64 54.7
ClCG07G010220 Citrullus lanatus HOM05D005007 ORTHO05D006053 4.5e-12 74.7 100 42.0
Glyma.06G227850 Glycine max HOM05D005007 ORTHO05D006053 4.5e-12 74.7 83 43.4
Glyma.06G227900 Glycine max HOM05D005007 ORTHO05D006053 4.5e-12 74.7 83 43.4
Sc16g0007670 Simmondsia chinensis HOM05D005007 ORTHO05D006053 5.9e-12 74.3 87 44.8
Rhsim02G0146700 Rhododendron simsii HOM05D005007 ORTHO05D006053 7.7e-12 73.9 91 44.0
MD11G1264800 Malus domestica HOM05D005007 ORTHO05D006053 1.0e-11 73.6 53 58.5
Peaxi162Scf00202g00119 Petunia axillaris HOM05D005007 ORTHO05D006053 1.0e-11 73.6 91 47.3
TWI39G0558 Tripterygium wilfordii HOM05D005007 ORTHO05D006053 1.0e-11 73.6 66 53.0
COL.COLO4_17528 Corchorus olitorius HOM05D005007 ORTHO05D006053 1.3e-11 73.2 100 42.0
CSS0021075 Camellia sinensis var. sinensis HOM05D005007 ORTHO05D006053 2.2e-11 72.4 81 46.9
Carub.0007s2243 Capsella rubella HOM05D005007 ORTHO05D006053 2.2e-11 72.4 89 38.2
CsaV3_4G008110 Cucumis sativus L. HOM05D005007 ORTHO05D006053 2.2e-11 72.4 87 46.0
PGSC0003DMG400028468 Solanum tuberosum HOM05D005007 ORTHO05D006053 2.9e-11 72.0 92 44.6
Sp7g17510 Schrenkiella parvula HOM05D005007 ORTHO05D006053 3.8e-11 71.6 76 43.4
MSTRG.7429 Avicennia marina HOM05D005007 ORTHO05D006053 8.5e-11 70.5 100 39.0
Actinidia18804 Actinidia chinensis HOM05D005007 ORTHO05D006053 1.1e-10 70.1 62 54.8
Sed0025620 Sechium edule HOM05D005007 ORTHO05D006053 1.1e-10 70.1 50 64.0
Atru.chr2.2102 Acer truncatum HOM05D005007 ORTHO05D006053 1.5e-10 69.7 88 42.0
Aqoxy4G00249 Aquilegia oxysepala HOM05D005007 ORTHO05D006053 1.5e-10 69.7 71 52.1
Thhalv10027446m.g Eutrema salsugineum HOM05D005007 ORTHO05D006053 1.9e-10 69.3 87 37.9
Sabra16G0257800 Salix brachista HOM05D005007 ORTHO05D006053 2.5e-10 68.9 65 50.8
arahy.Tifrunner.gnm1.ann1.G1B0F8 Arachis hypogaea HOM05D005007 ORTHO05D006053 3.2e-10 68.6 77 45.5
Nitab4.5_0007471g0020 Nicotiana tabacum HOM05D005007 ORTHO05D006053 4.2e-10 68.2 65 53.8
CANSAT35G0905 Cannabis sativa HOM05D005007 ORTHO05D006053 5.5e-10 67.8 54 59.3
Nn3g21105 Nelumbo nucifera HOM05D005007 ORTHO05D006053 5.5e-10 67.8 78 47.4
Nitab4.5_0000437g0140 Nicotiana tabacum HOM05D005007 ORTHO05D006053 9.4e-10 67.0 65 53.8
Ah.09g233580 Amaranthus hybridus HOM05D005007 ORTHO05D006053 1.6e-09 66.2 63 49.2
unitig_0.g744 Utricularia gibba HOM05D005007 ORTHO05D006053 1.6e-09 66.2 90 40.0
Potri.001G393001 Populus trichocarpa HOM05D005007 ORTHO05D006053 2.1e-09 65.9 61 52.5
ATR0012G015 Amborella trichopoda HOM05D005007 ORTHO05D006053 2.7e-09 65.5 88 39.8
PGSC0003DMG400044408 Solanum tuberosum HOM05D005007 ORTHO05D006053 3.6e-09 65.1 45 71.1
Potri.011G108700 Populus trichocarpa HOM05D005007 ORTHO05D006053 8.0e-09 63.9 81 40.7
HPP92_008753 Vanilla planifolia HOM05D005007 ORTHO05D006053 1.0e-08 63.5 76 40.8
Migut.M00716 Erythranthe guttata HOM05D005007 ORTHO05D006053 1.4e-08 63.2 84 44.0
Eucgr.D00467 Eucalyptus grandis HOM05D005007 ORTHO05D006053 2.3e-08 62.4 78 41.0
Sabra11G0096200 Salix brachista HOM05D005007 ORTHO05D006053 2.3e-08 62.4 49 59.2
Potri.001G389150 Populus trichocarpa HOM05D005007 ORTHO05D006053 6.7e-08 60.8 81 39.5
Gorai.009G160600 Gossypium raimondii HOM05D005007 ORTHO05D006053 1.1e-07 60.1 62 37.1
Lsat_1_v5_gn_5_126541 Lactuca sativa HOM05D005007 ORTHO05D006053 1.1e-07 60.1 79 46.8
Peaxi162Scf00111g01466 Petunia axillaris HOM05D005007 ORTHO05D006053 1.1e-07 60.1 45 66.7
CDE10G1215 Ceratophyllum demersum HOM05D005007 ORTHO05D006053 2.6e-07 58.9 40 67.5
Actinidia16774 Actinidia chinensis HOM05D005007 ORTHO05D006053 7.5e-07 57.4 53 43.4
Nn6g34499 Nelumbo nucifera HOM05D005007 ORTHO05D006053 7.5e-07 57.4 49 57.1
DCAR_005144 Daucus carota HOM05D005007 ORTHO05D006053 2.2e-06 55.8 82 40.2
SGA_v2.0_scaffold181G39748 Striga asiatica HOM05D002453 ORTHO05D008746 6.3e-06 54.3 52 51.9


User provided reference genes

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