Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007147.2 Cucumis melo HOM05D006911 ORTHO05D006663 6.5e-38 160.2 80 100.0
ClCG01G024470 Citrullus lanatus HOM05D006911 ORTHO05D006663 2.5e-34 148.3 80 95.0
CsaV3_6G051600 Cucumis sativus L. HOM05D006911 ORTHO05D006663 9.7e-34 146.4 80 88.8
Sed0011251 Sechium edule HOM05D006911 ORTHO05D006663 1.4e-32 142.5 80 87.5
Sed0023541 Sechium edule HOM05D006911 ORTHO05D006663 3.8e-22 107.8 80 70.0
QL05p059038 Quercus lobata HOM05D006911 ORTHO05D006663 4.7e-12 74.3 70 58.6
Ciclev10017350m.g Citrus clementina HOM05D006911 ORTHO05D006663 6.1e-12 73.9 72 61.1
COL.COLO4_38300 Corchorus olitorius HOM05D006911 ORTHO05D006663 8.0e-12 73.6 75 52.0
Thecc.06G153400 Theobroma cacao HOM05D006911 ORTHO05D006663 2.0e-10 68.9 69 55.1
TWI09G0032 Tripterygium wilfordii HOM05D006911 ORTHO05D006663 2.0e-10 68.9 72 50.0
COL.COLO4_24713 Corchorus olitorius HOM05D006911 ORTHO05D006663 1.3e-09 66.2 58 56.9
Potri.004G131200 Populus trichocarpa HOM05D006911 ORTHO05D006663 2.8e-09 65.1 85 42.4
Potri.011G079900 Populus trichocarpa HOM05D006911 ORTHO05D006663 2.8e-09 65.1 72 52.8
CiPaw.09G126200 Carya illinoinensis HOM05D006911 ORTHO05D006663 4.1e-08 61.2 73 47.9
Nn4g26517 Nelumbo nucifera HOM05D006911 ORTHO05D006663 5.3e-08 60.8 56 53.6
BcaC06g31483 Brassica carinata HOM05D010376 ORTHO05D006663 7.0e-08 60.5 64 50.0
Gohir.D10G040100 Gossypium hirsutum HOM05D006911 ORTHO05D006663 7.0e-08 60.5 75 45.3
Gorai.011G042200 Gossypium raimondii HOM05D006911 ORTHO05D006663 7.0e-08 60.5 75 45.3
Gohir.A10G039300 Gossypium hirsutum HOM05D006911 ORTHO05D006663 9.1e-08 60.1 75 45.3
Gohir.D05G152400 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.2e-07 59.7 77 45.5
Gorai.009G156500 Gossypium raimondii HOM05D006911 ORTHO05D006663 1.2e-07 59.7 73 45.2
Gohir.A05G149800 Gossypium hirsutum HOM05D006911 ORTHO05D006663 2.0e-07 58.9 70 45.7
Nn3g20669 Nelumbo nucifera HOM05D006911 ORTHO05D006663 2.0e-07 58.9 68 47.1
BcaC03g16844 Brassica carinata HOM05D010376 ORTHO05D006663 2.7e-07 58.5 64 48.4
C07p29520 Brassica napus HOM05D010376 ORTHO05D006663 2.7e-07 58.5 64 50.0
BolC7t43501H Brassica oleracea HOM05D010376 ORTHO05D006663 2.7e-07 58.5 64 50.0
Manes.15G119700 Manihot esculenta HOM05D006911 ORTHO05D006663 2.7e-07 58.5 41 61.0
RcHm_v2.0_Chr7g0229651 Rosa chinensis HOM05D006911 ORTHO05D006663 2.7e-07 58.5 72 48.6
Gohir.A06G197500 Gossypium hirsutum HOM05D006911 ORTHO05D006663 3.5e-07 58.2 68 45.6
Glyma.08G083800 Glycine max HOM05D006911 ORTHO05D006663 4.5e-07 57.8 70 54.3
Thhalv10001093m.g Eutrema salsugineum HOM05D010376 ORTHO05D006663 7.7e-07 57.0 64 48.4
Phvul.002G194700 Phaseolus vulgaris HOM05D006911 ORTHO05D006663 7.7e-07 57.0 68 48.5
Prupe.4G077900 Prunus persica HOM05D006911 ORTHO05D006663 7.7e-07 57.0 71 49.3
RcHm_v2.0_Chr5g0013541 Rosa chinensis HOM05D006911 ORTHO05D006663 7.7e-07 57.0 72 47.2
BcaB07g30843 Brassica carinata HOM05D010376 ORTHO05D006663 1.0e-06 56.6 64 46.9
BcaC03g16845 Brassica carinata HOM05D010376 ORTHO05D006663 1.0e-06 56.6 64 46.9
LjContig00049g0014504 Lotus japonicus HOM05D006911 ORTHO05D006663 1.0e-06 56.6 68 45.6
Gohir.D06G205000 Gossypium hirsutum HOM05D006911 ORTHO05D006663 1.3e-06 56.2 68 44.1
FvH4_3g05900 Fragaria vesca HOM05D006911 ORTHO05D006663 1.7e-06 55.8 66 43.9
FAN21G0769 Fragaria x ananassa HOM05D006911 ORTHO05D006663 1.7e-06 55.8 71 45.1
Gorai.010G239100 Gossypium raimondii HOM05D006911 ORTHO05D006663 1.7e-06 55.8 68 45.6
A06p46010 Brassica napus HOM05D010376 ORTHO05D006663 2.9e-06 55.1 64 46.9
BraA06t27465Z Brassica rapa HOM05D010376 ORTHO05D006663 2.9e-06 55.1 64 46.9
CSS0014266 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 2.9e-06 55.1 69 47.8
CSS0033096 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 2.9e-06 55.1 69 47.8
C02p47270 Brassica napus HOM05D010376 ORTHO05D006663 3.8e-06 54.7 74 43.2
CARHR175490 Cardamine hirsuta HOM05D010376 ORTHO05D006663 3.8e-06 54.7 67 47.8
FvH4_6g38520 Fragaria vesca HOM05D006911 ORTHO05D006663 6.5e-06 53.9 63 39.7
FAN02G1638 Fragaria x ananassa HOM05D006911 ORTHO05D006663 6.5e-06 53.9 63 39.7
FAN14G5866 Fragaria x ananassa HOM05D006911 ORTHO05D006663 6.5e-06 53.9 63 39.7
Glyma.05G129200 Glycine max HOM05D006911 ORTHO05D006663 6.5e-06 53.9 73 49.3
Lj4g0007682 Lotus japonicus HOM05D006911 ORTHO05D006663 6.5e-06 53.9 65 53.8
QL08p044828 Quercus lobata HOM05D006911 ORTHO05D006663 6.5e-06 53.9 46 52.2
MD05G1287000 Malus domestica HOM05D006911 ORTHO05D006663 8.5e-06 53.5 71 45.1
Sed0000672 Sechium edule HOM05D006911 ORTHO05D006663 8.5e-06 53.5 87 46.0


User provided reference genes

Program Settings