Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007091.2 Cucumis melo HOM05D005265 ORTHO05D006326 1.0e-64 250.0 130 100.0
ClCG01G025030 Citrullus lanatus HOM05D005265 ORTHO05D006326 4.0e-61 238.0 131 96.2
CsaV3_6G052210 Cucumis sativus L. HOM05D005265 ORTHO05D006326 6.3e-59 230.7 128 96.1
Sed0026922 Sechium edule HOM05D005265 ORTHO05D006326 1.0e-56 223.4 132 90.9
Sed0012654 Sechium edule HOM05D005265 ORTHO05D006326 1.9e-55 219.2 131 88.5
Peaxi162Scf00045g02242 Petunia axillaris HOM05D005265 ORTHO05D006326 1.7e-51 206.1 132 82.6
Thecc.02G010800 Theobroma cacao HOM05D005265 ORTHO05D006326 1.7e-51 206.1 131 84.0
CiPaw.10G086700 Carya illinoinensis HOM05D005265 ORTHO05D006326 2.2e-51 205.7 131 82.4
Cc09_g08490 Coffea canephora HOM05D005265 ORTHO05D006326 1.4e-50 203.0 132 82.6
Hma1.2p1_0689F.1_g203690 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 1.4e-50 203.0 132 83.3
Hma1.2p1_1418F.1_g282220 Hydrangea macrophylla HOM05D005265 ORTHO05D006326 1.4e-50 203.0 132 83.3
Dinv15893 Davidia involucrata HOM05D005265 ORTHO05D006326 1.8e-50 202.6 132 82.6
GSVIVG01021584001 Vitis vinifera HOM05D005265 ORTHO05D006326 1.8e-50 202.6 131 81.7
Nitab4.5_0003368g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 2.4e-50 202.2 132 83.3
CiPaw.09G117100 Carya illinoinensis HOM05D005265 ORTHO05D006326 3.1e-50 201.8 131 80.9
Dinv32199 Davidia involucrata HOM05D005265 ORTHO05D006326 4.1e-50 201.4 132 81.8
Duzib132G0868 Durio zibethinus HOM05D005265 ORTHO05D006326 4.1e-50 201.4 131 81.7
Manes.14G134800 Manihot esculenta HOM05D005265 ORTHO05D006326 4.1e-50 201.4 131 80.2
Nitab4.5_0002991g0030 Nicotiana tabacum HOM05D005265 ORTHO05D006326 4.1e-50 201.4 132 82.6
PGR083G1323 Punica granatum HOM05D005265 ORTHO05D006326 4.1e-50 201.4 131 80.9
Eucgr.D00234 Eucalyptus grandis HOM05D005265 ORTHO05D006326 5.4e-50 201.1 132 82.6
Lj1g0015817 Lotus japonicus HOM05D005265 ORTHO05D006326 5.4e-50 201.1 131 80.9
QL05p054070 Quercus lobata HOM05D005265 ORTHO05D006326 5.4e-50 201.1 130 77.7
COL.COLO4_17668 Corchorus olitorius HOM05D005265 ORTHO05D006326 7.0e-50 200.7 131 79.4
Haze_05746 Corylus avellana HOM05D005265 ORTHO05D006326 7.0e-50 200.7 132 81.1
CANSAT35G0137 Cannabis sativa HOM05D005265 ORTHO05D006326 1.2e-49 199.9 131 80.9
Glyma.15G194300 Glycine max HOM05D005265 ORTHO05D006326 1.2e-49 199.9 131 81.7
Phvul.009G216400 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 2.0e-49 199.1 131 81.7
arahy.Tifrunner.gnm1.ann1.9042LP Arachis hypogaea HOM05D005265 ORTHO05D006326 2.7e-49 198.7 131 80.2
Cpa.g.sc17.68 Carica papaya HOM05D005265 ORTHO05D006326 2.7e-49 198.7 131 79.4
Migut.M01877 Erythranthe guttata HOM05D005265 ORTHO05D006326 2.7e-49 198.7 132 81.8
AL1G44320 Arabidopsis lyrata HOM05D005265 ORTHO05D006326 3.5e-49 198.4 132 78.8
BraA09t39132Z Brassica rapa HOM05D005265 ORTHO05D006326 5.9e-49 197.6 132 78.8
VMungo1309G1099 Vigna mungo HOM05D005265 ORTHO05D006326 5.9e-49 197.6 131 80.9
Nitab4.5_0000100g0280 Nicotiana tabacum HOM05D005265 ORTHO05D006326 7.8e-49 197.2 132 80.3
BcaC05g27071 Brassica carinata HOM05D005265 ORTHO05D006326 1.7e-48 196.1 132 78.0
A09p36080 Brassica napus HOM05D005265 ORTHO05D006326 1.7e-48 196.1 132 78.0
C05p29330 Brassica napus HOM05D005265 ORTHO05D006326 1.7e-48 196.1 132 78.0
BolC5t31665H Brassica oleracea HOM05D005265 ORTHO05D006326 1.7e-48 196.1 132 78.0
CSS0007721 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 2.3e-48 195.7 133 78.9
CSS0016265 Camellia sinensis var. sinensis HOM05D005265 ORTHO05D006326 2.3e-48 195.7 133 78.9
Manes.06G061100 Manihot esculenta HOM05D005265 ORTHO05D006326 2.3e-48 195.7 130 78.5
Phvul.002G140800 Phaseolus vulgaris HOM05D005265 ORTHO05D006326 2.3e-48 195.7 131 80.9
arahy.Tifrunner.gnm1.ann1.ZS1M1K Arachis hypogaea HOM05D005265 ORTHO05D006326 2.9e-48 195.3 131 78.6
Aa31LG6G5400 Aethionema arabicum HOM05D005265 ORTHO05D006326 3.9e-48 194.9 132 76.5
Nitab4.5_0001809g0020 Nicotiana tabacum HOM05D005265 ORTHO05D006326 3.9e-48 194.9 132 80.3
CARHR029770 Cardamine hirsuta HOM05D005265 ORTHO05D006326 5.0e-48 194.5 132 79.5
Gohir.D02G238400 Gossypium hirsutum HOM05D005265 ORTHO05D006326 5.0e-48 194.5 132 79.5
Gorai.005G266900 Gossypium raimondii HOM05D005265 ORTHO05D006326 5.0e-48 194.5 132 79.5
AT1G30380 Arabidopsis thaliana HOM05D005265 ORTHO05D006326 6.6e-48 194.1 132 78.8
Thhalv10009090m.g Eutrema salsugineum HOM05D005265 ORTHO05D006326 6.6e-48 194.1 132 77.3
Gohir.A03G216800 Gossypium hirsutum HOM05D005265 ORTHO05D006326 6.6e-48 194.1 132 79.5
MD00G1109700 Malus domestica HOM05D005265 ORTHO05D006326 8.6e-48 193.7 130 80.0
Prupe.4G088200 Prunus persica HOM05D005265 ORTHO05D006326 8.6e-48 193.7 130 80.0
Lalb_Chr08g0233241 Lupinus albus HOM05D005265 ORTHO05D006326 1.1e-47 193.4 131 75.6
SalBow8G5437 Salvia bowleyana HOM05D005265 ORTHO05D006326 1.1e-47 193.4 132 79.5
MSTRG.7528 Avicennia marina HOM05D005265 ORTHO05D006326 1.5e-47 193.0 134 77.6
BcaB07g32648 Brassica carinata HOM05D005265 ORTHO05D006326 1.9e-47 192.6 131 77.1
Cfa000859 Carpinus fangiana HOM05D005265 ORTHO05D006326 1.9e-47 192.6 132 77.3
DCAR_004804 Daucus carota HOM05D005265 ORTHO05D006326 1.9e-47 192.6 132 78.0
DCAR_004805 Daucus carota HOM05D005265 ORTHO05D006326 1.9e-47 192.6 132 78.8
Oeu040090.1 Olea europaea HOM05D005265 ORTHO05D006326 1.9e-47 192.6 132 78.8
Potri.006G254200 Populus trichocarpa HOM05D005265 ORTHO05D006326 2.5e-47 192.2 134 81.3
AUR62038135 Chenopodium quinoa HOM05D005265 ORTHO05D006326 4.3e-47 191.4 131 76.3
Ciclev10017170m.g Citrus clementina HOM05D005265 ORTHO05D006326 4.3e-47 191.4 131 78.6
Solyc08g006930.3 Solanum lycopersicum HOM05D005265 ORTHO05D006326 4.3e-47 191.4 132 78.0
Sopen08g002900 Solanum pennellii HOM05D005265 ORTHO05D006326 4.3e-47 191.4 132 78.0
THA.LOC104814318 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 4.3e-47 191.4 134 79.1
CAN.G1882.1 Capsicum annuum HOM05D005265 ORTHO05D006326 5.6e-47 191.0 132 78.0
Duzib248G0887 Durio zibethinus HOM05D005265 ORTHO05D006326 5.6e-47 191.0 131 79.4
PGSC0003DMG400020505 Solanum tuberosum HOM05D005265 ORTHO05D006326 5.6e-47 191.0 132 78.0
TAR624G1044 Trochodendron aralioides HOM05D005265 ORTHO05D006326 5.6e-47 191.0 131 78.6
Atru.chr10.966 Acer truncatum HOM05D005265 ORTHO05D006326 7.3e-47 190.7 131 79.4
CDE12G0489 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 7.3e-47 190.7 130 75.4
Sabra18G0029900 Salix brachista HOM05D005265 ORTHO05D006326 7.3e-47 190.7 132 80.3
THA.LOC104812683 Tarenaya hassleriana HOM05D005265 ORTHO05D006326 7.3e-47 190.7 132 79.5
BcaB03g12211 Brassica carinata HOM05D005265 ORTHO05D006326 9.5e-47 190.3 132 78.0
CDE01G0641 Ceratophyllum demersum HOM05D005265 ORTHO05D006326 1.2e-46 189.9 130 75.4
FAN25G1721 Fragaria x ananassa HOM05D005265 ORTHO05D006326 1.2e-46 189.9 130 80.0
Glyma.09G087700 Glycine max HOM05D005265 ORTHO05D006326 1.2e-46 189.9 134 79.9
Ca_12734_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 1.6e-46 189.5 132 78.8
Ca_12740_v3 Cicer arietinum L. HOM05D005265 ORTHO05D006326 1.6e-46 189.5 132 78.8
RcHm_v2.0_Chr5g0015361 Rosa chinensis HOM05D005265 ORTHO05D006326 1.6e-46 189.5 130 80.0
BcaC01g00188 Brassica carinata HOM05D005265 ORTHO05D006326 2.1e-46 189.1 132 77.3
A08p24490 Brassica napus HOM05D005265 ORTHO05D006326 2.1e-46 189.1 132 77.3
C03p76720 Brassica napus HOM05D005265 ORTHO05D006326 2.1e-46 189.1 132 77.3
BraA08t34405Z Brassica rapa HOM05D005265 ORTHO05D006326 2.1e-46 189.1 132 77.3
Sp1g26220 Schrenkiella parvula HOM05D005265 ORTHO05D006326 2.1e-46 189.1 132 77.3
FAN16G0550 Fragaria x ananassa HOM05D005265 ORTHO05D006326 2.8e-46 188.7 130 79.2
PSO541G2745 Papaver somniferum HOM05D005265 ORTHO05D006326 4.7e-46 188.0 130 76.9
PSO675G1042 Papaver somniferum HOM05D005265 ORTHO05D006326 4.7e-46 188.0 130 76.9
Aqoxy4G00026 Aquilegia oxysepala HOM05D005265 ORTHO05D006326 6.1e-46 187.6 130 75.4
EL10Ac7g15766 Beta vulgaris HOM05D005265 ORTHO05D006326 6.1e-46 187.6 131 76.3
Actinidia13436 Actinidia chinensis HOM05D005265 ORTHO05D006326 8.0e-46 187.2 131 76.3
FvH4_3g09680 Fragaria vesca HOM05D005265 ORTHO05D006326 8.0e-46 187.2 130 78.5
FAN11G2263 Fragaria x ananassa HOM05D005265 ORTHO05D006326 8.0e-46 187.2 130 78.5
TAR626G0103 Trochodendron aralioides HOM05D005265 ORTHO05D006326 8.0e-46 187.2 130 77.7
AUR62009823 Chenopodium quinoa HOM05D005265 ORTHO05D006326 1.4e-45 186.4 131 74.0
HanXRQChr04g0113581 Helianthus annuus HOM05D005265 ORTHO05D006326 1.8e-45 186.0 132 75.0
TWI09G0405 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 2.3e-45 185.7 133 75.9
Carub.0001s2858 Capsella rubella HOM05D005265 ORTHO05D006326 4.0e-45 184.9 132 78.0
TAR626G0742 Trochodendron aralioides HOM05D005265 ORTHO05D006326 4.0e-45 184.9 130 76.9
Potri.018G027600 Populus trichocarpa HOM05D005265 ORTHO05D006326 5.2e-45 184.5 132 78.8
MBI02_g44634_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 6.8e-45 184.1 130 76.2
Sc24g0001600 Simmondsia chinensis HOM05D005265 ORTHO05D006326 6.8e-45 184.1 132 75.8
MBI02_g40641_MAGBIO Magnolia biondii HOM05D005265 ORTHO05D006326 8.9e-45 183.7 130 76.2
Ah.08g216220 Amaranthus hybridus HOM05D000506 ORTHO05D000369 2.0e-44 182.6 124 77.4
BolC3t19927H Brassica oleracea HOM05D005265 ORTHO05D006326 2.6e-44 182.2 131 74.0
Actinidia33666 Actinidia chinensis HOM05D005265 ORTHO05D006326 4.4e-44 181.4 131 75.6
vmacro03415 Vaccinium macrocarpon HOM05D005265 ORTHO05D006326 5.8e-44 181.0 131 73.3
Duzib052G0655 Durio zibethinus HOM05D005265 ORTHO05D006326 9.8e-44 180.3 132 75.0
MD05G1276100 Malus domestica HOM05D005265 ORTHO05D006326 1.3e-43 179.9 134 73.1
Medtr1g026820 Medicago truncatula HOM05D005265 ORTHO05D006326 1.3e-43 179.9 132 73.5
ATR0681G400 Amborella trichopoda HOM05D005265 ORTHO05D006326 2.9e-43 178.7 129 71.3
unitig_61.g26080 Utricularia gibba HOM05D005265 ORTHO05D006326 3.7e-43 178.3 130 75.4
TWI73G0862 Tripterygium wilfordii HOM05D005265 ORTHO05D006326 4.9e-43 177.9 133 72.9
ECA236G4370 Erigeron canadensis HOM05D005265 ORTHO05D006326 2.4e-42 175.6 134 71.6
HanXRQChr15g0481551 Helianthus annuus HOM05D005265 ORTHO05D006326 2.4e-42 175.6 132 72.7
SGA_v2.0_scaffold223G42844 Striga asiatica HOM05D005265 ORTHO05D006326 9.2e-42 173.7 132 73.5
TPR.G24497 Trifolium pratense HOM05D005265 ORTHO05D006326 1.6e-41 172.9 133 73.7
Hund18717 Selenicereus undatus HOM05D005265 ORTHO05D006326 6.6e-40 167.5 137 69.3
Lsat_1_v5_gn_7_32001 Lactuca sativa HOM05D005265 ORTHO05D006326 2.5e-39 165.6 134 70.1
Rhsim13G0119400 Rhododendron simsii HOM05D005265 ORTHO05D006326 2.5e-39 165.6 131 69.5
Psat0s1315g0080 Pisum sativum HOM05D005265 ORTHO05D006326 5.6e-39 164.5 163 60.7
Lalb_Chr23g0275991 Lupinus albus HOM05D005265 ORTHO05D006326 7.3e-39 164.1 104 82.7
HPP92_019500 Vanilla planifolia HOM05D005265 ORTHO05D006326 7.3e-39 164.1 129 71.3
FAN21G2293 Fragaria x ananassa HOM05D005265 ORTHO05D006326 9.5e-39 163.7 179 57.5
Os07g0148900 Oryza sativa ssp. japonica HOM05D005265 ORTHO05D006326 3.1e-37 158.7 124 72.6
Zm00001eb299990 Zea mays HOM05D005265 ORTHO05D006326 3.4e-36 155.2 133 66.9
Pp3c13_10540 Physcomitrium patens HOM05D005265 ORTHO05D006326 3.7e-35 151.8 133 69.2
SEGI_05857 Sequoiadendron giganteum HOM05D005265 ORTHO05D006326 4.9e-35 151.4 122 67.2
Mapoly0125s0033 Marchantia polymorpha HOM05D005265 ORTHO05D006326 1.9e-34 149.4 121 70.2
Sp4g16930 Schrenkiella parvula HOM05D005265 ORTHO05D006326 2.4e-34 149.1 123 65.0
Pp3c3_10740 Physcomitrium patens HOM05D005265 ORTHO05D006326 4.1e-34 148.3 135 68.1
Nn4g26654 Nelumbo nucifera HOM05D005265 ORTHO05D006326 5.1e-32 141.4 124 65.3
Nn3g20272 Nelumbo nucifera HOM05D005265 ORTHO05D006326 1.5e-31 139.8 126 62.7
Pp3c13_10520 Physcomitrium patens HOM05D005265 ORTHO05D006326 4.0e-29 131.7 133 61.7
AagrBONN_evm.TU.Sc2ySwM_369.184 Anthoceros agrestis HOM05D005265 ORTHO05D006326 4.4e-28 128.3 131 59.5
CBR_g39729 Chara braunii HOM05D005265 ORTHO05D006326 4.3e-23 111.7 110 55.5
SMO358G0410 Selaginella moellendorffii HOM05D005265 ORTHO05D006326 7.6e-20 100.9 79 72.2
Cre17.g724300 Chlamydomonas reinhardtii HOM05D005265 ORTHO05D006326 3.2e-18 95.5 105 50.5
Nn8g40769 Nelumbo nucifera HOM05D005265 ORTHO05D006326 2.8e-14 82.4 66 65.2
RcHm_v2.0_Chr5g0036151 Rosa chinensis HOM05D005265 ORTHO05D006326 1.3e-11 73.6 49 73.5
MCO04G068 Micromonas commoda HOM05D005265 ORTHO05D006326 1.0e-08 63.9 78 46.2
PRCOL_00005455 Prasinoderma coloniale HOM05D005265 ORTHO05D006326 1.7e-08 63.2 93 44.1
FAN25G2470 Fragaria x ananassa HOM05D006092 ORTHO05D007508 6.2e-06 54.7 120 35.0
RcHm_v2.0_Chr5g0074661 Rosa chinensis HOM05D006092 ORTHO05D007508 6.2e-06 54.7 120 35.0


User provided reference genes

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