Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007083.2 Cucumis melo HOM05D004072 ORTHO05D005933 0.0e+00 3342.0 1740 100.0
CsaV3_6G052280 Cucumis sativus L. HOM05D004072 ORTHO05D005933 0.0e+00 3263.0 1740 97.0
ClCG01G025080 Citrullus lanatus HOM05D004072 ORTHO05D005933 0.0e+00 3002.6 1885 85.7
Sed0022754 Sechium edule HOM05D004072 ORTHO05D005933 0.0e+00 2924.8 1745 87.5
Atru.chr10.895 Acer truncatum HOM05D004072 ORTHO05D005933 0.0e+00 2456.4 1731 74.2
GSVIVG01021613001 Vitis vinifera HOM05D004072 ORTHO05D005933 0.0e+00 2422.9 1741 73.1
CiPaw.09G116100 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2418.3 1718 73.5
MD10G1254200 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2409.8 1737 71.4
CiPaw.10G086200 Carya illinoinensis HOM05D004072 ORTHO05D005933 0.0e+00 2409.4 1725 72.6
Manes.06G055700 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2403.6 1727 73.1
RcHm_v2.0_Chr5g0015701 Rosa chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2400.2 1735 71.4
MD05G1274500 Malus domestica HOM05D004072 ORTHO05D005933 0.0e+00 2389.8 1724 71.0
Thecc.02G012200 Theobroma cacao HOM05D004072 ORTHO05D005933 0.0e+00 2384.0 1732 72.4
Duzib132G0425 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2375.5 1732 71.5
Dinv32181 Davidia involucrata HOM05D004072 ORTHO05D005933 0.0e+00 2368.2 1733 70.9
FvH4_3g09950 Fragaria vesca HOM05D004072 ORTHO05D005933 0.0e+00 2352.0 1734 70.7
TAR627G0650 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 2347.0 1720 70.9
Manes.14G122228 Manihot esculenta HOM05D004072 ORTHO05D005933 0.0e+00 2345.9 1721 71.1
Gohir.A01G139400 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2338.1 1729 71.4
FAN16G0609 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2332.8 1734 69.8
FAN11G0415 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2331.2 1734 70.3
Nn3g20249 Nelumbo nucifera HOM05D004072 ORTHO05D005933 0.0e+00 2327.4 1708 70.4
CANSAT35G1345 Cannabis sativa HOM05D004072 ORTHO05D005933 0.0e+00 2325.8 1732 70.5
Duzib052G1035 Durio zibethinus HOM05D004072 ORTHO05D005933 0.0e+00 2325.4 1742 70.6
Sabra16G0235400 Salix brachista HOM05D004072 ORTHO05D005933 0.0e+00 2320.4 1733 70.5
TWI73G0101 Tripterygium wilfordii HOM05D004072 ORTHO05D005933 0.0e+00 2318.9 1744 70.0
FAN25G0515 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2318.1 1734 70.1
Potri.001G357700 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 2313.9 1712 70.8
Gorai.002G162800 Gossypium raimondii HOM05D004072 ORTHO05D005933 0.0e+00 2312.3 1729 71.1
Actinidia07470 Actinidia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2309.6 1741 68.6
FAN21G2972 Fragaria x ananassa HOM05D004072 ORTHO05D005933 0.0e+00 2308.5 1734 69.9
PGR031G0553 Punica granatum HOM05D004072 ORTHO05D005933 0.0e+00 2304.2 1710 70.1
CSS0029738 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 0.0e+00 2302.3 1710 70.1
Gohir.D01G131100 Gossypium hirsutum HOM05D004072 ORTHO05D005933 0.0e+00 2292.3 1729 70.9
SalBow8G4752 Salvia bowleyana HOM05D004072 ORTHO05D005933 0.0e+00 2276.1 1743 67.9
Lj6g0006190 Lotus japonicus HOM05D004072 ORTHO05D005933 0.0e+00 2264.6 1716 69.0
Eucgr.E02482 Eucalyptus grandis HOM05D004072 ORTHO05D005933 0.0e+00 2263.4 1722 69.3
Cc09_g08230 Coffea canephora HOM05D004072 ORTHO05D005933 0.0e+00 2263.0 1749 67.2
Ca_02513_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 0.0e+00 2248.4 1693 68.9
Prupe.4G089200 Prunus persica HOM05D004072 ORTHO05D005933 0.0e+00 2238.4 1799 66.9
Medtr2g048210 Medicago truncatula HOM05D004072 ORTHO05D005933 0.0e+00 2234.5 1694 68.8
Lalb_Chr08g0233191 Lupinus albus HOM05D004072 ORTHO05D005933 0.0e+00 2219.9 1748 65.6
Aa31LG10G6650 Aethionema arabicum HOM05D004072 ORTHO05D005933 0.0e+00 2215.7 1718 67.3
Sopen02g019350 Solanum pennellii HOM05D004072 ORTHO05D005933 0.0e+00 2214.9 1754 65.8
MSTRG.16285 Avicennia marina HOM05D004072 ORTHO05D005933 0.0e+00 2212.6 1748 66.6
Thhalv10016130m.g Eutrema salsugineum HOM05D004072 ORTHO05D005933 0.0e+00 2212.2 1718 67.1
Phvul.009G217700 Phaseolus vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2197.9 1716 67.7
AL4G30670 Arabidopsis lyrata HOM05D004072 ORTHO05D005933 0.0e+00 2196.4 1719 66.9
Solyc02g070260.4 Solanum lycopersicum HOM05D004072 ORTHO05D005933 0.0e+00 2195.2 1753 65.0
Migut.M01885 Erythranthe guttata HOM05D004072 ORTHO05D005933 0.0e+00 2191.8 1742 66.5
THA.LOC104798608 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 2191.8 1740 66.0
AT2G34680 Arabidopsis thaliana HOM05D004072 ORTHO05D005933 0.0e+00 2189.8 1727 67.1
A03p19230 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2189.8 1745 66.4
PSO541G2055 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2188.3 1736 66.2
CAN.G660.42 Capsicum annuum HOM05D004072 ORTHO05D005933 0.0e+00 2185.6 1729 65.5
PSO675G3632 Papaver somniferum HOM05D004072 ORTHO05D005933 0.0e+00 2185.6 1730 66.2
SGA_v2.0_scaffold223G42858 Striga asiatica HOM05D004072 ORTHO05D005933 0.0e+00 2185.2 1777 64.9
Nitab4.5_0008398g0020 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2182.5 1759 65.3
Sp4g16960 Schrenkiella parvula HOM05D004072 ORTHO05D005933 0.0e+00 2182.5 1732 66.2
BraA03t11178Z Brassica rapa HOM05D004072 ORTHO05D005933 0.0e+00 2170.6 1755 65.6
Carub.0004s1637 Capsella rubella HOM05D004072 ORTHO05D005933 0.0e+00 2170.2 1746 65.1
arahy.Tifrunner.gnm1.ann1.39P5NE Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2167.1 1779 65.8
C03p22430 Brassica napus HOM05D004072 ORTHO05D005933 0.0e+00 2167.1 1722 65.9
Aqoxy1G01646_Aqoxy1G01645 Aquilegia oxysepala HOM05D004072 ORTHO05D005933 0.0e+00 2166.3 1738 65.2
QL05p053312 Quercus lobata HOM05D004072 ORTHO05D005933 0.0e+00 2165.6 1790 66.0
BolC3t14626H Brassica oleracea HOM05D004072 ORTHO05D005933 0.0e+00 2159.4 1745 65.5
HanXRQChr04g0119071 Helianthus annuus HOM05D004072 ORTHO05D005933 0.0e+00 2147.5 1683 66.4
Nitab4.5_0001181g0040 Nicotiana tabacum HOM05D004072 ORTHO05D005933 0.0e+00 2132.5 1751 64.5
ECA236G2867 Erigeron canadensis HOM05D004072 ORTHO05D005933 0.0e+00 2131.3 1699 65.7
Psat1g019120 Pisum sativum HOM05D004072 ORTHO05D005933 0.0e+00 2130.9 1414 74.4
arahy.Tifrunner.gnm1.ann1.WCP5HM Arachis hypogaea HOM05D004072 ORTHO05D005933 0.0e+00 2112.0 1705 65.1
ATR0165G006 Amborella trichopoda HOM05D004072 ORTHO05D005933 0.0e+00 2103.6 1742 64.5
Lsat_1_v5_gn_7_29400 Lactuca sativa HOM05D004072 ORTHO05D005933 0.0e+00 2093.9 1705 64.2
AUR62038603 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2077.8 1704 64.0
Ah.14g086190 Amaranthus hybridus HOM05D004072 ORTHO05D005933 0.0e+00 2072.0 1684 64.3
EL10Ac8g19581 Beta vulgaris HOM05D004072 ORTHO05D005933 0.0e+00 2041.5 1774 62.0
Sc24g0001460 Simmondsia chinensis HOM05D004072 ORTHO05D005933 0.0e+00 2040.0 1691 64.3
AUR62042015 Chenopodium quinoa HOM05D004072 ORTHO05D005933 0.0e+00 2035.4 1687 63.4
vmacro03398 Vaccinium macrocarpon HOM05D004072 ORTHO05D005933 0.0e+00 2017.7 2139 54.1
CARHR128800 Cardamine hirsuta HOM05D004072 ORTHO05D005933 0.0e+00 2010.3 1714 61.1
Peaxi162Scf00670g00114 Petunia axillaris HOM05D004072 ORTHO05D005933 0.0e+00 2006.1 1628 64.7
VMungo1309G2749 Vigna mungo HOM05D004072 ORTHO05D005933 0.0e+00 1985.7 1296 73.4
Glyma.09G084300 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1978.8 1292 73.5
Hund21569 Selenicereus undatus HOM05D004072 ORTHO05D005933 0.0e+00 1971.8 1707 61.3
COL.COLO4_17682 Corchorus olitorius HOM05D004072 ORTHO05D005933 0.0e+00 1942.9 1733 61.0
SEGI_16447 Sequoiadendron giganteum HOM05D004072 ORTHO05D005933 0.0e+00 1931.0 1783 58.8
DCAR_003864 Daucus carota HOM05D004072 ORTHO05D005933 0.0e+00 1906.3 1684 61.2
BcaC01g05784 Brassica carinata HOM05D004072 ORTHO05D005933 0.0e+00 1890.9 1459 66.5
Zm00001eb299970 Zea mays HOM05D004072 ORTHO05D005933 0.0e+00 1879.8 1689 59.6
Ciclev10014084m.g Citrus clementina HOM05D004072 ORTHO05D005933 0.0e+00 1868.2 1159 77.7
Oeu040089.1 Olea europaea HOM05D004072 ORTHO05D005933 0.0e+00 1809.7 1795 56.9
Pp3c17_7410 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1716.8 1756 53.2
SMO271G0077 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1699.1 1708 52.9
SMO308G0046 Selaginella moellendorffii HOM05D004072 ORTHO05D005933 0.0e+00 1692.9 1713 54.3
Pp3c14_11530 Physcomitrium patens HOM05D004072 ORTHO05D005933 0.0e+00 1692.6 1724 53.0
Haze_05771 Corylus avellana HOM05D004072 ORTHO05D005933 0.0e+00 1690.2 1744 57.4
Rhsim13G0119900 Rhododendron simsii HOM05D004072 ORTHO05D005933 0.0e+00 1665.6 1466 62.4
Mapoly0023s0068 Marchantia polymorpha HOM05D004072 ORTHO05D005933 0.0e+00 1630.9 1744 51.0
Glyma.15G192700 Glycine max HOM05D004072 ORTHO05D005933 0.0e+00 1610.5 1045 74.2
Lj1C1164T5 Lonicera japonica HOM05D004072 ORTHO05D005933 0.0e+00 1467.2 936 75.1
HPP92_001000 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1463.4 1082 64.4
Potri.011G090200 Populus trichocarpa HOM05D004072 ORTHO05D005933 0.0e+00 1407.9 1144 67.6
TPR.G28615 Trifolium pratense HOM05D004072 ORTHO05D005933 0.0e+00 1354.0 1099 67.8
HPP92_000967 Vanilla planifolia HOM05D004072 ORTHO05D005933 0.0e+00 1335.5 1368 55.4
THA.LOC104813323 Tarenaya hassleriana HOM05D004072 ORTHO05D005933 0.0e+00 1328.9 1154 63.9
TAR626G0996 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1115.9 910 60.9
TAR626G0585 Trochodendron aralioides HOM05D004072 ORTHO05D005933 0.0e+00 1112.4 938 67.4
EL10Ac9g22637 Beta vulgaris HOM05D004072 ORTHO05D005933 1.0e-289 1001.1 742 65.6
Hma1.2p1_1600F.1_g293150 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 1.8e-273 947.2 616 74.2
CDE02G3068 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 1.4e-265 921.0 682 62.9
TPR.G28617 Trifolium pratense HOM05D004072 ORTHO05D005933 2.3e-257 893.6 601 71.2
Potri.011G090150 Populus trichocarpa HOM05D004072 ORTHO05D005933 1.4e-249 867.8 552 77.0
CDE02G4494 Ceratophyllum demersum HOM05D004072 ORTHO05D005933 1.8e-241 840.9 828 59.4
CAN.G660.43 Capsicum annuum HOM05D004072 ORTHO05D005933 1.1e-219 768.5 1597 34.2
CBR_g51063 Chara braunii HOM05D004072 ORTHO05D005933 2.9e-207 727.2 846 42.6
Cpa.g.sc17.88 Carica papaya HOM05D004072 ORTHO05D005933 7.6e-184 649.4 430 73.7
RcHm_v2.0_Chr1g0313161 Rosa chinensis HOM05D004072 ORTHO05D005933 1.4e-153 548.9 329 81.2
Glyma.15G192800 Glycine max HOM05D004072 ORTHO05D005933 8.5e-151 539.7 602 60.3
Os07g0148800 Oryza sativa ssp. japonica HOM05D004072 ORTHO05D005933 1.8e-148 531.9 376 69.7
Medtr8g464200 Medicago truncatula HOM05D004072 ORTHO05D005933 4.7e-125 454.1 905 32.5
Lj1A1163T36 Lonicera japonica HOM05D004072 ORTHO05D005933 1.7e-122 445.7 650 50.9
Rhsim07G0133800 Rhododendron simsii HOM05D004072 ORTHO05D005933 3.1e-108 398.3 698 36.8
RcHm_v2.0_Chr5g0015771 Rosa chinensis HOM05D004072 ORTHO05D005933 2.9e-106 391.7 336 63.7
Cpa.g.sc17.87 Carica papaya HOM05D004072 ORTHO05D005933 1.6e-104 386.0 247 71.7
Cpa.g.sc17.85 Carica papaya HOM05D004072 ORTHO05D005933 3.5e-104 384.8 241 77.2
HPP92_000970 Vanilla planifolia HOM05D004072 ORTHO05D005933 1.6e-101 375.9 522 53.4
CBR_g58028 Chara braunii HOM05D004072 ORTHO05D005933 2.9e-98 365.2 431 42.9
CSS0006934 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 9.3e-89 333.6 214 70.6
CSS0027246 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 5.1e-79 301.2 190 77.4
Glyma.09G084500 Glycine max HOM05D004072 ORTHO05D005933 4.8e-77 294.7 370 54.6
CSS0044654 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 9.7e-70 270.4 176 69.9
Ca_19908_v3 Cicer arietinum L. HOM05D004072 ORTHO05D005933 4.6e-64 251.5 175 65.1
MELO3C003358.2 Cucumis melo HOM05D004072 ORTHO05D005933 6.1e-56 224.6 170 70.0
Lj1A1163T37 Lonicera japonica HOM05D004072 ORTHO05D019491 1.0e-55 223.8 150 70.7
CBR_g34929 Chara braunii HOM05D004072 ORTHO05D005933 7.2e-49 201.1 209 47.4
PGSC0003DMG400021174 Solanum tuberosum HOM05D004072 ORTHO05D005933 5.3e-44 184.9 115 78.3
QL05p053334 Quercus lobata HOM05D004072 ORTHO05D005933 4.2e-41 175.3 98 87.8
VMungo1309G0832 Vigna mungo HOM05D004072 ORTHO05D005933 4.2e-41 175.3 441 40.4
Cpa.g.sc17.83 Carica papaya HOM05D004072 ORTHO05D005933 1.7e-37 163.3 129 58.9
Lsat_1_v5_gn_1_88400 Lactuca sativa HOM05D004072 ORTHO05D005933 8.2e-37 161.0 130 57.7
Atru.chr2.7 Acer truncatum HOM05D004072 ORTHO05D005933 2.1e-32 146.4 205 45.9
CBR_g34931 Chara braunii HOM05D000019 ORTHO05D001702 3.7e-29 135.6 123 53.7
Atru.chr10.903 Acer truncatum HOM05D004072 ORTHO05D021063 6.3e-29 134.8 226 49.1
Actinidia04621 Actinidia chinensis HOM05D004072 ORTHO05D005933 1.2e-27 130.6 106 61.3
Cpa.g.sc17.84 Carica papaya HOM05D004072 ORTHO05D019491 4.2e-25 122.1 69 78.3
Cc09_g08270 Coffea canephora HOM05D004072 ORTHO05D005933 2.8e-24 119.4 71 80.3
Hma1.2p1_1600F.1_g293130 Hydrangea macrophylla HOM05D004072 ORTHO05D005933 3.6e-24 119.0 63 92.1
CSS0009414 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D005933 2.3e-23 116.3 61 85.2
Medtr3g010273 Medicago truncatula HOM05D004072 ORTHO05D005933 3.0e-23 115.9 93 63.4
HanXRQChr09g0247891 Helianthus annuus HOM05D004072 ORTHO05D005933 1.2e-22 114.0 87 63.2
vmacro01040 Vaccinium macrocarpon HOM05D000902 ORTHO05D000832 9.8e-22 110.9 207 37.7
Cc09_g08260 Coffea canephora HOM05D004072 ORTHO05D005933 5.4e-20 105.1 73 74.0
RcHm_v2.0_Chr1g0313151 Rosa chinensis HOM05D004072 ORTHO05D005933 3.8e-18 99.0 57 86.0
Cpa.g.sc17.80 Carica papaya HOM05D004072 ORTHO05D021063 6.6e-18 98.2 307 36.5
CAN.G23816.1 Capsicum annuum HOM05D004072 ORTHO05D038051 3.6e-16 92.4 71 57.7
Actinidia36004 Actinidia chinensis HOM05D004072 ORTHO05D038051 2.3e-15 89.7 58 65.5
CSS0023750 Camellia sinensis var. sinensis HOM05D004072 ORTHO05D021063 2.0e-14 86.7 272 37.9
Nn1g03421 Nelumbo nucifera HOM05D004072 ORTHO05D019491 3.4e-14 85.9 51 74.5
SalBow5G3729 Salvia bowleyana HOM05D004072 ORTHO05D007163 7.5e-14 84.7 98 41.8
Duzib248G0219 Durio zibethinus HOM05D004072 ORTHO05D019491 1.8e-12 80.1 50 74.0
PGSC0003DMG400002279 Solanum tuberosum HOM05D004072 ORTHO05D005933 3.2e-12 79.3 48 79.2
CARHR128810 Cardamine hirsuta HOM05D004072 ORTHO05D019491 1.6e-11 77.0 44 72.7
PGSC0003DMG400006210 Solanum tuberosum HOM05D007022 ORTHO05D008868 6.0e-11 75.1 52 69.2
Lsat_1_v5_gn_6_117121 Lactuca sativa HOM05D004072 ORTHO05D001686 1.3e-10 73.9 72 50.0
Lsat_1_v5_gn_9_121081 Lactuca sativa HOM05D004072 ORTHO05D001686 6.6e-10 71.6 70 50.0
SalBow5G4417 Salvia bowleyana HOM05D004072 ORTHO05D007163 5.6e-09 68.6 97 40.2
Duzib248G0875 Durio zibethinus HOM05D000121 ORTHO05D000102 1.2e-08 67.4 44 75.0
Lsat_1_v5_gn_6_30620 Lactuca sativa HOM05D000062 ORTHO05D013119 2.8e-08 66.2 165 29.7
Lsat_1_v5_gn_5_73260 Lactuca sativa HOM05D000371 ORTHO05D006177 4.0e-07 62.4 42 66.7
Lsat_1_v5_gn_7_25100 Lactuca sativa HOM05D003161 ORTHO05D005173 1.5e-06 60.5 52 51.9
SEGI_36323 Sequoiadendron giganteum HOM05D004072 ORTHO05D385563 2.0e-06 60.1 54 50.0
Oeu025478.1 Olea europaea HOM05D002278 ORTHO05D007219 5.8e-06 58.5 126 31.7
Lsat_1_v5_gn_7_40200 Lactuca sativa HOM05D000062 ORTHO05D013119 7.5e-06 58.2 31 80.6
Rhsim12G0022600 Rhododendron simsii HOM05D004072 ORTHO05D005933 7.5e-06 58.2 49 63.3


User provided reference genes

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