Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007049.2 Cucumis melo HOM05D005284 ORTHO05D006609 5.0e-162 574.3 276 100.0
CsaV3_6G052590 Cucumis sativus L. HOM05D005284 ORTHO05D006609 3.9e-159 564.7 276 97.5
Sed0002797 Sechium edule HOM05D005284 ORTHO05D006609 1.8e-140 502.7 275 85.8
Dinv04290 Davidia involucrata HOM05D005284 ORTHO05D006609 2.3e-122 442.6 277 74.0
Cfa000771 Carpinus fangiana HOM05D005284 ORTHO05D006609 5.0e-122 441.4 277 74.0
CANSAT78G1346 Cannabis sativa HOM05D005284 ORTHO05D006609 8.6e-122 440.7 281 72.6
TWI38G1381 Tripterygium wilfordii HOM05D005284 ORTHO05D006609 1.5e-121 439.9 277 72.2
Atru.chr10.695 Acer truncatum HOM05D005284 ORTHO05D006609 3.6e-120 435.3 284 71.5
Potri.011G157500 Populus trichocarpa HOM05D005284 ORTHO05D006609 3.6e-120 435.3 277 72.2
CiPaw.09G147600 Carya illinoinensis HOM05D005284 ORTHO05D006609 6.1e-120 434.5 277 71.8
DCAR_000834 Daucus carota HOM05D005284 ORTHO05D006609 1.4e-119 433.3 278 72.7
Ciclev10016195m.g Citrus clementina HOM05D005284 ORTHO05D006609 2.3e-119 432.6 281 71.5
Gohir.D10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 5.2e-119 431.4 280 72.1
Prupe.4G100600 Prunus persica HOM05D005284 ORTHO05D006609 8.9e-119 430.6 278 72.7
Gorai.011G006700 Gossypium raimondii HOM05D005284 ORTHO05D006609 1.2e-118 430.3 280 71.8
Cpa.g.sc489.2 Carica papaya HOM05D005284 ORTHO05D006609 2.0e-118 429.5 280 72.9
Cc08_g07170 Coffea canephora HOM05D005284 ORTHO05D006609 2.0e-118 429.5 278 70.9
RcHm_v2.0_Chr5g0018081 Rosa chinensis HOM05D005284 ORTHO05D006609 2.0e-118 429.5 279 73.1
Actinidia29265 Actinidia chinensis HOM05D005284 ORTHO05D006609 9.8e-118 427.2 277 70.4
MD10G1243300 Malus domestica HOM05D005284 ORTHO05D006609 9.8e-118 427.2 279 73.1
MD05G1265300 Malus domestica HOM05D005284 ORTHO05D006609 1.3e-117 426.8 279 72.4
Gohir.A10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 1.7e-117 426.4 280 71.4
Duzib235G1425 Durio zibethinus HOM05D005284 ORTHO05D006609 2.2e-117 426.0 280 71.4
FvH4_3g11170 Fragaria vesca HOM05D005284 ORTHO05D006609 5.4e-116 421.4 279 71.7
Eucgr.D01014 Eucalyptus grandis HOM05D005284 ORTHO05D006609 1.2e-115 420.2 280 71.4
Thecc.06G009000 Theobroma cacao HOM05D005284 ORTHO05D006609 1.2e-115 420.2 282 70.2
Sopen02g006280 Solanum pennellii HOM05D005284 ORTHO05D006609 1.6e-115 419.9 279 71.3
vmacro03466 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 2.0e-115 419.5 277 70.4
CAN.G39.30 Capsicum annuum HOM05D005284 ORTHO05D006609 7.8e-115 417.5 279 70.3
MSTRG.7559 Avicennia marina HOM05D005284 ORTHO05D006609 1.0e-114 417.2 280 70.7
Rhsim13G0125000 Rhododendron simsii HOM05D005284 ORTHO05D006609 1.3e-114 416.8 277 70.0
Lalb_Chr12g0208701 Lupinus albus HOM05D005284 ORTHO05D006609 2.3e-114 416.0 277 68.2
HanXRQChr12g0359761 Helianthus annuus HOM05D005284 ORTHO05D006609 3.8e-114 415.2 278 70.1
TAR626G0222 Trochodendron aralioides HOM05D005284 ORTHO05D006609 1.9e-113 412.9 280 68.9
Migut.M01924 Erythranthe guttata HOM05D005284 ORTHO05D006609 2.5e-113 412.5 289 67.8
Medtr4g094452 Medicago truncatula HOM05D005284 ORTHO05D006609 3.3e-113 412.1 275 67.6
Lsat_1_v5_gn_5_75320 Lactuca sativa HOM05D005284 ORTHO05D006609 4.3e-113 411.8 278 70.1
THA.LOC104812070 Tarenaya hassleriana HOM05D005284 ORTHO05D006609 2.1e-112 409.5 280 69.3
PSO541G1959 Papaver somniferum HOM05D005284 ORTHO05D006609 2.8e-112 409.1 283 68.9
PSO675G4367 Papaver somniferum HOM05D005284 ORTHO05D006609 2.8e-112 409.1 283 68.9
Phvul.002G201500 Phaseolus vulgaris HOM05D005284 ORTHO05D006609 3.6e-112 408.7 275 68.0
Nn7g37791 Nelumbo nucifera HOM05D005284 ORTHO05D006609 6.1e-112 407.9 278 70.1
EL10Ac9g22329 Beta vulgaris HOM05D005284 ORTHO05D006609 1.4e-111 406.8 279 69.2
Ah.01g003600 Amaranthus hybridus HOM05D005284 ORTHO05D006609 1.8e-111 406.4 282 69.5
Lj4g0006881 Lotus japonicus HOM05D005284 ORTHO05D006609 4.0e-111 405.2 277 67.9
Glyma.05G124100 Glycine max HOM05D005284 ORTHO05D006609 6.8e-111 404.4 277 67.5
CDE02G0074 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 1.5e-110 403.3 267 69.7
Glyma.08G079300 Glycine max HOM05D005284 ORTHO05D006609 2.0e-110 402.9 276 66.7
CARHR178630 Cardamine hirsuta HOM05D005284 ORTHO05D006609 2.6e-110 402.5 280 67.5
QL05p064527 Quercus lobata HOM05D005284 ORTHO05D006609 5.8e-110 401.4 276 68.8
arahy.Tifrunner.gnm1.ann1.06Y4PY Arachis hypogaea HOM05D005284 ORTHO05D006609 7.5e-110 401.0 277 67.1
Aqoxy1G01504 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 8.3e-109 397.5 284 66.2
Aqoxy1G01508 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 8.3e-109 397.5 284 66.2
BcaC04g21829 Brassica carinata HOM05D005284 ORTHO05D006609 1.1e-108 397.1 280 67.1
Thhalv10000956m.g Eutrema salsugineum HOM05D005284 ORTHO05D006609 1.1e-108 397.1 282 67.4
VMungo0251G0080 Vigna mungo HOM05D005284 ORTHO05D006609 1.1e-108 397.1 275 66.2
COL.COLO4_26880 Corchorus olitorius HOM05D005284 ORTHO05D006609 1.8e-108 396.4 323 60.1
Sp2g09280 Schrenkiella parvula HOM05D005284 ORTHO05D006609 1.8e-108 396.4 279 67.4
AL8G15400 Arabidopsis lyrata HOM05D005284 ORTHO05D006609 2.4e-108 396.0 280 67.5
ClCG01G025350 Citrullus lanatus HOM05D005284 ORTHO05D006609 2.4e-108 396.0 321 65.4
Carub.0008s0404 Capsella rubella HOM05D005284 ORTHO05D006609 4.1e-108 395.2 280 66.8
Ca_18306_v3 Cicer arietinum L. HOM05D005284 ORTHO05D006609 5.4e-108 394.8 283 65.7
Psat7g094280 Pisum sativum HOM05D005284 ORTHO05D006609 7.0e-108 394.4 272 66.5
C09p26950 Brassica napus HOM05D005284 ORTHO05D006609 2.0e-107 392.9 281 66.9
BolC9t55580H Brassica oleracea HOM05D005284 ORTHO05D006609 2.0e-107 392.9 281 66.9
ECA234G4512 Erigeron canadensis HOM05D005284 ORTHO05D006609 2.0e-107 392.9 260 70.8
Aa31LG9G8740 Aethionema arabicum HOM05D005284 ORTHO05D006609 4.6e-107 391.7 280 66.4
BcaB07g30944 Brassica carinata HOM05D005284 ORTHO05D006609 6.0e-107 391.3 280 66.4
BraA06t27590Z Brassica rapa HOM05D005284 ORTHO05D006609 7.8e-107 391.0 280 66.1
A06p47190 Brassica napus HOM05D005284 ORTHO05D006609 1.0e-106 390.6 280 66.1
CDE05G2614 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 1.0e-106 390.6 288 64.9
A09p21140 Brassica napus HOM05D005284 ORTHO05D006609 2.3e-106 389.4 281 66.5
BraA09t37720Z Brassica rapa HOM05D005284 ORTHO05D006609 2.3e-106 389.4 281 66.5
BcaC06g34553 Brassica carinata HOM05D005284 ORTHO05D006609 5.6e-105 384.8 280 65.7
C07p27240 Brassica napus HOM05D005284 ORTHO05D006609 5.6e-105 384.8 280 65.7
BolC7t43252H Brassica oleracea HOM05D005284 ORTHO05D006609 5.6e-105 384.8 280 65.7
BcaC06g31615 Brassica carinata HOM05D005284 ORTHO05D006609 1.2e-104 383.6 276 65.2
Manes.14G126000 Manihot esculenta HOM05D005284 ORTHO05D006609 1.2e-104 383.6 235 74.5
SalBow8G0467 Salvia bowleyana HOM05D005284 ORTHO05D006609 1.2e-104 383.6 315 60.3
Sabra11G0142700 Salix brachista HOM05D005284 ORTHO05D006609 1.6e-104 383.3 235 74.0
Nitab4.5_0000607g0120 Nicotiana tabacum HOM05D005284 ORTHO05D006609 8.9e-103 377.5 391 50.6
Oeu000506.1 Olea europaea HOM05D005284 ORTHO05D006609 8.9e-103 377.5 353 55.5
SalBow3G1375 Salvia bowleyana HOM05D005284 ORTHO05D006609 1.2e-102 377.1 305 60.3
Lj2C336G9 Lonicera japonica HOM05D005284 ORTHO05D006609 9.8e-102 374.0 278 64.0
ATR0763G041 Amborella trichopoda HOM05D005284 ORTHO05D006609 1.1e-100 370.5 276 63.4
Sc04g0004240 Simmondsia chinensis HOM05D005284 ORTHO05D006609 1.2e-99 367.1 236 75.0
Nitab4.5_0000100g0010 Nicotiana tabacum HOM05D005284 ORTHO05D006609 2.0e-99 366.3 384 50.3
HPP92_000943 Vanilla planifolia HOM05D005284 ORTHO05D006609 3.9e-98 362.1 280 60.4
SEGI_24201 Sequoiadendron giganteum HOM05D005284 ORTHO05D006609 4.3e-97 358.6 281 58.4
Peaxi162Scf00155g00513 Petunia axillaris HOM05D005284 ORTHO05D006609 4.7e-96 355.1 277 63.2
Os03g0780900 Oryza sativa ssp. japonica HOM05D005284 ORTHO05D006609 1.7e-93 346.7 308 55.8
TPR.G23781 Trifolium pratense HOM05D005284 ORTHO05D006609 4.9e-93 345.1 267 60.7
FAN16G1000 Fragaria x ananassa HOM05D005284 ORTHO05D006609 8.3e-93 344.4 278 60.8
SGA_v2.0_scaffold1G00293 Striga asiatica HOM05D006189 ORTHO05D007765 1.1e-92 344.0 238 70.2
MBI18_g27137_MAGBIO Magnolia biondii HOM05D005284 ORTHO05D006609 1.6e-91 340.1 322 54.3
FAN21G1306 Fragaria x ananassa HOM05D005284 ORTHO05D006609 4.6e-91 338.6 279 60.6
FAN25G2940 Fragaria x ananassa HOM05D005284 ORTHO05D006609 1.3e-90 337.0 279 60.2
unitig_748.g7349 Utricularia gibba HOM05D005284 ORTHO05D006609 2.4e-87 326.2 288 57.3
SMO364G0300 Selaginella moellendorffii HOM05D005284 ORTHO05D006609 1.7e-85 320.1 277 54.5
Mapoly0083s0001 Marchantia polymorpha HOM05D005284 ORTHO05D006609 3.3e-81 305.8 273 54.6
PGR083G0243 Punica granatum HOM05D005284 ORTHO05D006609 4.3e-81 305.4 216 67.6
AT5G44450 Arabidopsis thaliana HOM05D005284 ORTHO05D006609 7.3e-81 304.7 206 70.4
GSVIVG01021778001 Vitis vinifera HOM05D005284 ORTHO05D006609 5.2e-79 298.5 243 63.0
Solyc02g021700.4 Solanum lycopersicum HOM05D005284 ORTHO05D006609 2.9e-77 292.7 187 73.8
AUR62042202 Chenopodium quinoa HOM05D005284 ORTHO05D006609 2.5e-73 279.6 228 61.4
CBR_g19259 Chara braunii HOM05D005284 ORTHO05D006609 5.6e-73 278.5 268 51.5
Zm00001eb059610 Zea mays HOM05D005284 ORTHO05D006609 1.5e-70 270.4 304 47.4
AUR62033057 Chenopodium quinoa HOM05D005284 ORTHO05D006609 3.4e-70 269.2 188 67.6
MCO11G684 Micromonas commoda HOM05D005284 ORTHO05D006609 1.8e-66 256.9 257 48.2
Dinv04294 Davidia involucrata HOM05D005284 ORTHO05D006609 5.5e-60 235.3 142 73.9
Cre06.g274400 Chlamydomonas reinhardtii HOM05D005284 ORTHO05D006609 1.0e-58 231.1 249 44.2
PRCOL_00002523 Prasinoderma coloniale HOM05D005284 ORTHO05D006609 1.8e-58 230.3 257 45.1
AagrBONN_evm.TU.Sc2ySwM_344.3509 Anthoceros agrestis HOM05D005284 ORTHO05D006609 8.4e-53 211.5 198 52.5
Thecc.06G010000 Theobroma cacao HOM05D005284 ORTHO05D006609 1.9e-52 210.3 193 54.4
Hma1.2p1_0721F.1_g208670 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 2.5e-41 173.3 111 70.3
Hma1.2p1_0721F.1_g208680 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 2.5e-41 173.3 111 70.3
CARHR114890 Cardamine hirsuta HOM05D005284 ORTHO05D006609 2.7e-35 153.3 98 72.4
Haze_05942 Corylus avellana HOM05D005284 ORTHO05D006609 2.6e-30 136.7 90 68.9
Cfa017779 Carpinus fangiana HOM05D005284 ORTHO05D006609 5.0e-29 132.5 94 63.8
vmacro21870 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 1.1e-28 131.3 89 68.5
Thecc.06G009200 Theobroma cacao HOM05D005284 ORTHO05D006609 3.9e-26 122.9 95 60.0
PGSC0003DMG400009806 Solanum tuberosum HOM05D005284 ORTHO05D006609 1.1e-25 121.3 93 63.4
Aa31LG2G17800 Aethionema arabicum HOM05D005284 ORTHO05D006609 1.5e-25 120.9 92 60.9
Thecc.06G009400 Theobroma cacao HOM05D005284 ORTHO05D006609 1.3e-24 117.9 95 57.9
Thecc.06G009800 Theobroma cacao HOM05D005284 ORTHO05D006609 2.2e-24 117.1 95 58.9
Dinv09223 Davidia involucrata HOM05D005284 ORTHO05D006609 3.5e-22 109.8 91 59.3
Dinv23919 Davidia involucrata HOM05D005284 ORTHO05D006609 5.9e-22 109.0 89 57.3
Pp3c22_8670 Physcomitrium patens HOM05D005284 ORTHO05D006609 5.0e-21 105.9 112 48.2
GSVIVG01037925001 Vitis vinifera HOM05D005284 ORTHO05D006609 1.1e-20 104.8 75 64.0
Lalb_Chr13g0291531 Lupinus albus HOM05D005284 ORTHO05D006609 1.9e-20 104.0 94 50.0
Sabra16G0312400 Salix brachista HOM05D005284 ORTHO05D006609 7.2e-20 102.1 70 62.9
CSS0000752 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 1.2e-19 101.3 52 82.7
PGSC0003DMG400015105 Solanum tuberosum HOM05D005284 ORTHO05D006609 1.6e-19 100.9 53 77.4
BcaB07g30524 Brassica carinata HOM05D005284 ORTHO05D006609 2.7e-19 100.1 64 70.3
Nitab4.5_0000637g0040 Nicotiana tabacum HOM05D005284 ORTHO05D006609 8.5e-13 78.6 57 59.6
CSS0004293 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 1.9e-12 77.4 38 78.9
Glyma.04G136150 Glycine max HOM05D005284 ORTHO05D006609 7.2e-12 75.5 36 77.8
Nitab4.5_0001154g0100 Nicotiana tabacum HOM05D005284 ORTHO05D006609 9.4e-12 75.1 50 64.0
Migut.D00154 Erythranthe guttata HOM05D005284 ORTHO05D006609 1.4e-10 71.2 65 56.9
A07p10120 Brassica napus HOM05D005284 ORTHO05D024396 6.3e-08 62.4 33 72.7
BraA07t28805Z Brassica rapa HOM05D005284 ORTHO05D024396 6.3e-08 62.4 33 72.7
Prupe.4G100800 Prunus persica HOM05D005284 ORTHO05D006609 6.3e-08 62.4 53 50.9
Nitab4.5_0007327g0030 Nicotiana tabacum HOM05D002609 ORTHO05D002820 7.0e-07 58.9 197 26.9
Nitab4.5_0011657g0020 Nicotiana tabacum HOM05D002609 ORTHO05D002820 1.2e-06 58.2 210 26.2
MSTRG.4577 Avicennia marina HOM05D002609 ORTHO05D002820 1.6e-06 57.8 197 26.4
Solyc12g040790.2 Solanum lycopersicum HOM05D002609 ORTHO05D002820 2.0e-06 57.4 179 26.3
Sopen12g020550 Solanum pennellii HOM05D002609 ORTHO05D002820 2.7e-06 57.0 179 26.3
PGSC0003DMG400014459 Solanum tuberosum HOM05D002609 ORTHO05D002820 4.5e-06 56.2 179 25.7


User provided reference genes

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