Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007033.2 Cucumis melo HOM05D004432 ORTHO05D005427 5.9e-200 700.7 356 100.0
CsaV3_6G052770 Cucumis sativus L. HOM05D004432 ORTHO05D005427 3.1e-193 678.3 351 97.7
ClCG01G025530 Citrullus lanatus HOM05D004432 ORTHO05D005427 1.2e-189 666.4 359 95.3
Sed0004537 Sechium edule HOM05D004432 ORTHO05D005427 6.2e-173 610.9 353 89.5
CiPaw.10G104800 Carya illinoinensis HOM05D004432 ORTHO05D005427 2.5e-142 509.2 358 75.4
Ciclev10015448m.g Citrus clementina HOM05D004432 ORTHO05D005427 9.6e-142 507.3 355 75.5
Thecc.02G004200 Theobroma cacao HOM05D004432 ORTHO05D005427 3.4e-139 498.8 354 74.3
COL.COLO4_18029 Corchorus olitorius HOM05D004432 ORTHO05D003521 2.1e-136 489.6 344 74.1
MD05G1247000 Malus domestica HOM05D004432 ORTHO05D005427 2.5e-134 482.6 352 72.4
MD10G1227600 Malus domestica HOM05D004432 ORTHO05D005427 1.3e-133 480.3 352 71.0
Atru.chr8.662 Acer truncatum HOM05D004432 ORTHO05D005427 3.4e-131 472.2 356 71.1
Lj1A1149G74 Lonicera japonica HOM05D004432 ORTHO05D005427 1.9e-129 466.5 374 68.4
RcHm_v2.0_Chr5g0021051 Rosa chinensis HOM05D004432 ORTHO05D005427 7.1e-129 464.5 354 70.9
Atru.chr10.352 Acer truncatum HOM05D004432 ORTHO05D005427 1.8e-127 459.9 355 70.4
Cc09_g05240 Coffea canephora HOM05D004432 ORTHO05D005427 1.6e-125 453.4 357 68.1
Actinidia33704 Actinidia chinensis HOM05D004432 ORTHO05D005427 2.8e-125 452.6 352 69.3
Gohir.D12G047900 Gossypium hirsutum HOM05D004432 ORTHO05D005427 8.2e-125 451.1 353 69.4
FAN16G2829 Fragaria x ananassa HOM05D004432 ORTHO05D005427 3.1e-124 449.1 354 69.5
FAN25G3492 Fragaria x ananassa HOM05D004432 ORTHO05D005427 3.1e-124 449.1 354 69.2
Duzib132G0752 Durio zibethinus HOM05D004432 ORTHO05D005427 5.3e-124 448.4 352 69.6
Gorai.008G050900 Gossypium raimondii HOM05D004432 ORTHO05D005427 5.3e-124 448.4 351 69.2
Potri.001G160700 Populus trichocarpa HOM05D004432 ORTHO05D005427 6.9e-124 448.0 354 67.8
FvH4_3g12940 Fragaria vesca HOM05D004432 ORTHO05D005427 9.0e-124 447.6 354 69.2
Gohir.A12G049500 Gossypium hirsutum HOM05D004432 ORTHO05D005427 1.2e-123 447.2 353 69.1
Duzib248G0466 Durio zibethinus HOM05D004432 ORTHO05D005427 1.5e-123 446.8 352 67.6
FAN21G3105 Fragaria x ananassa HOM05D004432 ORTHO05D005427 2.6e-123 446.0 351 68.9
FAN11G2748 Fragaria x ananassa HOM05D004432 ORTHO05D005427 3.4e-123 445.7 352 69.3
Sabra03G0044900 Salix brachista HOM05D004432 ORTHO05D005427 6.5e-122 441.4 359 68.8
Dinv31191 Davidia involucrata HOM05D004432 ORTHO05D005427 5.5e-121 438.3 355 67.6
Nn7g38330 Nelumbo nucifera HOM05D004432 ORTHO05D005427 7.2e-121 438.0 358 65.6
Hma1.2p1_0088F.1_g045180 Hydrangea macrophylla HOM05D004432 ORTHO05D005427 9.3e-121 437.6 354 67.5
Manes.03G075400 Manihot esculenta HOM05D004432 ORTHO05D005427 1.2e-120 437.2 353 68.6
Cpa.g.sc30.114 Carica papaya HOM05D004432 ORTHO05D005427 1.6e-120 436.8 353 67.1
PGSC0003DMG401017733 Solanum tuberosum HOM05D004432 ORTHO05D005427 3.5e-120 435.6 353 65.7
PSO675G3183 Papaver somniferum HOM05D004432 ORTHO05D005427 6.1e-120 434.9 357 66.4
PSO541G2602 Papaver somniferum HOM05D004432 ORTHO05D005427 7.9e-120 434.5 359 65.7
GSVIVG01012145001 Vitis vinifera HOM05D004432 ORTHO05D005427 3.9e-119 432.2 355 65.6
CSS0030674 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 5.1e-119 431.8 352 66.5
Glyma.08G049300 Glycine max HOM05D004432 ORTHO05D005427 5.1e-119 431.8 359 68.2
TWI63G0296 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 8.7e-119 431.0 355 66.2
Phvul.002G325100 Phaseolus vulgaris HOM05D004432 ORTHO05D005427 1.1e-118 430.6 354 68.1
TAR624G0396 Trochodendron aralioides HOM05D004432 ORTHO05D005427 2.5e-118 429.5 355 64.8
Nitab4.5_0006794g0040 Nicotiana tabacum HOM05D004432 ORTHO05D005427 3.3e-118 429.1 352 66.2
Aqoxy1G01396 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 7.4e-118 427.9 355 64.5
TWI34G0639 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 9.7e-118 427.6 357 65.5
CANSAT35G1493 Cannabis sativa HOM05D004432 ORTHO05D005427 1.6e-117 426.8 353 66.6
Nitab4.5_0010401g0010 Nicotiana tabacum HOM05D004432 ORTHO05D005427 2.2e-117 426.4 352 65.6
SalBow8G1652 Salvia bowleyana HOM05D004432 ORTHO05D005427 3.7e-117 425.6 354 63.8
Oeu056059.4 Olea europaea HOM05D004432 ORTHO05D005427 1.1e-116 424.1 362 65.7
TWI15G0381 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 3.1e-116 422.5 354 65.0
TPR.G12851 Trifolium pratense HOM05D004432 ORTHO05D005427 5.3e-116 421.8 358 66.2
Peaxi162Scf00198g01525 Petunia axillaris HOM05D004432 ORTHO05D005427 1.2e-115 420.6 358 65.6
MBI18_g00544_MAGBIO Magnolia biondii HOM05D004432 ORTHO05D005427 1.5e-115 420.2 356 64.3
PGR042G3514 Punica granatum HOM05D004432 ORTHO05D005427 5.9e-115 418.3 360 65.6
CSS0046356 Camellia sinensis var. sinensis HOM05D004432 ORTHO05D005427 7.7e-115 417.9 354 66.7
DCAR_003760 Daucus carota HOM05D004432 ORTHO05D005427 3.8e-114 415.6 357 63.9
arahy.Tifrunner.gnm1.ann1.AGE02H Arachis hypogaea HOM05D004432 ORTHO05D005427 5.0e-114 415.2 362 65.5
arahy.Tifrunner.gnm1.ann1.GLQ3B3 Arachis hypogaea HOM05D004432 ORTHO05D005427 2.5e-113 412.9 362 65.2
Oeu018409.2 Olea europaea HOM05D004432 ORTHO05D005427 3.2e-113 412.5 353 64.0
Peaxi162Scf00048g01413 Petunia axillaris HOM05D004432 ORTHO05D005427 3.2e-113 412.5 353 63.7
Sopen02g026240 Solanum pennellii HOM05D004432 ORTHO05D005427 5.5e-113 411.8 356 63.5
ECA232G3357 Erigeron canadensis HOM05D004432 ORTHO05D005427 1.2e-112 410.6 355 64.5
AL1G45380 Arabidopsis lyrata HOM05D004432 ORTHO05D005427 2.1e-112 409.8 357 65.5
Prupe.4G117400 Prunus persica HOM05D004432 ORTHO05D005427 4.6e-112 408.7 352 65.6
Actinidia22430 Actinidia chinensis HOM05D004432 ORTHO05D005427 7.9e-112 407.9 353 64.3
TWI15G1036 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.4e-111 407.1 346 65.0
Solyc02g081620.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 2.3e-111 406.4 355 62.8
Medtr8g106220 Medicago truncatula HOM05D004432 ORTHO05D005427 8.8e-111 404.4 362 63.0
Carub.0001s2938 Capsella rubella HOM05D004432 ORTHO05D005427 4.3e-110 402.1 357 64.7
GSVIVG01015880001 Vitis vinifera HOM05D004432 ORTHO05D005427 7.4e-110 401.4 353 62.0
CAN.G809.71 Capsicum annuum HOM05D004432 ORTHO05D005427 2.2e-109 399.8 356 62.9
Aa31LG6G12370 Aethionema arabicum HOM05D004432 ORTHO05D005427 3.7e-109 399.1 356 64.9
Cfa001128 Carpinus fangiana HOM05D004432 ORTHO05D005427 1.4e-108 397.1 308 70.8
SGA_v2.0_scaffold298G47706 Striga asiatica HOM05D004432 ORTHO05D005427 1.8e-108 396.7 355 61.7
AT1G30970 Arabidopsis thaliana HOM05D004432 ORTHO05D005427 7.7e-107 391.3 359 62.4
THA.LOC104798567 Tarenaya hassleriana HOM05D004432 ORTHO05D005427 1.0e-106 391.0 354 62.7
SGA_v2.0_scaffold175G39329 Striga asiatica HOM05D004432 ORTHO05D005427 1.3e-106 390.6 420 55.5
Glyma.05G241800 Glycine max HOM05D004432 ORTHO05D005427 8.5e-106 387.9 355 63.1
Psat7g005440 Pisum sativum HOM05D004432 ORTHO05D005427 4.2e-105 385.6 360 60.6
Lsat_1_v5_gn_8_106840 Lactuca sativa HOM05D004432 ORTHO05D005427 1.6e-104 383.6 358 64.5
Lj4g0008002 Lotus japonicus HOM05D004432 ORTHO05D005427 3.0e-103 379.4 359 62.1
Ca_17239_v3 Cicer arietinum L. HOM05D004432 ORTHO05D005427 6.7e-103 378.3 362 59.9
Sopen02g010370 Solanum pennellii HOM05D004432 ORTHO05D005427 2.6e-102 376.3 353 59.2
Eucgr.E04313 Eucalyptus grandis HOM05D004432 ORTHO05D005427 4.4e-102 375.6 354 61.0
QL11p012272 Quercus lobata HOM05D004432 ORTHO05D005427 1.3e-101 374.0 282 70.2
Migut.M02008 Erythranthe guttata HOM05D004432 ORTHO05D005427 1.7e-101 373.6 355 58.3
HanXRQChr09g0257831 Helianthus annuus HOM05D004432 ORTHO05D005427 2.2e-101 373.2 355 62.8
MSTRG.16369 Avicennia marina HOM05D004432 ORTHO05D005427 6.3e-101 371.7 355 59.7
Solyc02g032120.3 Solanum lycopersicum HOM05D004432 ORTHO05D005427 6.3e-101 371.7 353 58.6
Dinv05655 Davidia involucrata HOM05D004432 ORTHO05D005427 8.2e-101 371.3 355 60.0
Sabra01G0131600 Salix brachista HOM05D004432 ORTHO05D005427 2.0e-99 366.7 353 60.6
Lalb_Chr05g0222011 Lupinus albus HOM05D004432 ORTHO05D005427 2.6e-99 366.3 356 58.1
Sp1g26830 Schrenkiella parvula HOM05D004432 ORTHO05D005427 1.3e-98 364.0 354 59.3
unitig_748.g7489 Utricularia gibba HOM05D004432 ORTHO05D005427 1.1e-97 360.9 353 59.2
VMungo0251G3730 Vigna mungo HOM05D004432 ORTHO05D005427 1.1e-97 360.9 355 58.9
A08p10850 Brassica napus HOM05D004432 ORTHO05D005427 4.2e-97 359.0 355 60.3
BcaB07g32757 Brassica carinata HOM05D004432 ORTHO05D005427 8.0e-96 354.8 360 59.2
Sc16g0004480 Simmondsia chinensis HOM05D004432 ORTHO05D005427 8.8e-95 351.3 354 58.5
BolC8t48181H Brassica oleracea HOM05D004432 ORTHO05D005427 3.3e-94 349.4 354 59.3
BcaC07g37789 Brassica carinata HOM05D004432 ORTHO05D005427 1.7e-93 347.1 354 58.8
Lalb_Chr09g0330711 Lupinus albus HOM05D004432 ORTHO05D005427 4.8e-93 345.5 359 56.5
HPP92_024334 Vanilla planifolia HOM05D004432 ORTHO05D005427 1.1e-92 344.4 356 57.3
BcaB04g18194 Brassica carinata HOM05D004432 ORTHO05D005427 3.1e-92 342.8 354 57.3
Thhalv10008022m.g Eutrema salsugineum HOM05D004432 ORTHO05D005427 1.6e-91 340.5 355 59.2
Potri.003G074200 Populus trichocarpa HOM05D004432 ORTHO05D005427 2.7e-91 339.7 285 66.3
Lalb_Chr10g0095541 Lupinus albus HOM05D004432 ORTHO05D005427 1.3e-90 337.4 348 55.2
HPP92_006155 Vanilla planifolia HOM05D004432 ORTHO05D005427 1.9e-89 333.6 354 56.2
BraA08t33081Z Brassica rapa HOM05D004432 ORTHO05D005427 1.8e-87 327.0 354 57.6
AUR62017849 Chenopodium quinoa HOM05D004432 ORTHO05D005427 2.6e-86 323.2 359 54.3
AUR62003535 Chenopodium quinoa HOM05D004432 ORTHO05D005427 3.4e-86 322.8 356 54.5
BolC5t31752H Brassica oleracea HOM05D004432 ORTHO05D005427 4.4e-86 322.4 356 56.7
Hund04373 Selenicereus undatus HOM05D004432 ORTHO05D005427 1.7e-85 320.5 438 48.4
EL10Ac6g15345 Beta vulgaris HOM05D004432 ORTHO05D005427 2.8e-85 319.7 358 54.7
BraA09t39051Z Brassica rapa HOM05D004432 ORTHO05D005427 2.8e-85 319.7 355 55.8
A09p35240 Brassica napus HOM05D004432 ORTHO05D005427 1.1e-84 317.8 355 56.1
ATR0568G227 Amborella trichopoda HOM05D004432 ORTHO05D005427 1.8e-84 317.0 386 51.6
BcaC05g27130 Brassica carinata HOM05D004432 ORTHO05D005427 9.1e-84 314.7 356 56.2
C05p30150 Brassica napus HOM05D004432 ORTHO05D005427 9.1e-84 314.7 356 56.2
Ah.03g147620 Amaranthus hybridus HOM05D004432 ORTHO05D005427 1.6e-83 313.9 346 57.8
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 9.4e-81 304.7 305 58.0
Os09g0560900 Oryza sativa ssp. japonica HOM05D004432 ORTHO05D005427 6.1e-80 302.0 356 54.2
TWI32G0924 Tripterygium wilfordii HOM05D004432 ORTHO05D005427 1.8e-79 300.4 290 59.7
Haze_05275 Corylus avellana HOM05D004432 ORTHO05D005427 9.8e-78 294.7 275 62.5
SEGI_00495 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 9.2e-76 288.1 371 48.5
TAR629G1033 Trochodendron aralioides HOM05D004432 ORTHO05D005427 9.2e-76 288.1 273 59.0
vmacro03556 Vaccinium macrocarpon HOM05D004432 ORTHO05D005427 6.1e-72 275.4 456 42.5
Mapoly0070s0095 Marchantia polymorpha HOM05D004432 ORTHO05D005427 1.8e-71 273.9 379 47.2
AagrBONN_evm.TU.Sc2ySwM_344.4234 Anthoceros agrestis HOM05D004432 ORTHO05D005427 5.0e-66 255.8 376 47.1
CiPaw.09G137500 Carya illinoinensis HOM05D004432 ORTHO05D005427 1.5e-65 254.2 167 77.2
Pp3c22_1400 Physcomitrium patens HOM05D004432 ORTHO05D005427 2.6e-62 243.4 386 45.6
Dinv23013 Davidia involucrata HOM05D004432 ORTHO05D005427 4.4e-54 216.1 228 55.7
Rhsim13G0133800 Rhododendron simsii HOM05D004432 ORTHO05D005427 2.4e-52 210.3 281 49.1
RhsimUnG0176800 Rhododendron simsii HOM05D004432 ORTHO05D005427 2.4e-52 210.3 281 49.1
Zm00001eb104750 Zea mays HOM05D004432 ORTHO05D005427 1.2e-51 208.0 314 47.5
SMO239G0124 Selaginella moellendorffii HOM05D004432 ORTHO05D005427 1.6e-51 207.6 361 40.4
Haze_05262 Corylus avellana HOM05D004432 ORTHO05D005427 1.3e-50 204.5 98 95.9
SEGI_03989 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 1.2e-48 198.0 324 43.5
SHI20754 Sapria himalayana HOM05D000030 ORTHO05D000009 1.6e-48 197.6 689 30.3
Rhsim13G0133700 Rhododendron simsii HOM05D004432 ORTHO05D005427 2.1e-48 197.2 99 93.9
RhsimUnG0176700 Rhododendron simsii HOM05D004432 ORTHO05D005427 2.1e-48 197.2 99 93.9
CiPaw.09G137600 Carya illinoinensis HOM05D004432 ORTHO05D005427 2.3e-47 193.7 165 69.7
Dinv23014 Davidia involucrata HOM05D004432 ORTHO05D005427 3.3e-41 173.3 93 88.2
CARHR030510 Cardamine hirsuta HOM05D004432 ORTHO05D005427 5.6e-41 172.6 206 54.9
CBR_g1074 Chara braunii HOM05D004432 ORTHO05D005427 1.6e-40 171.0 277 42.2
Nitab4.5_0004903g0050 Nicotiana tabacum HOM05D004432 ORTHO05D005427 1.5e-38 164.5 232 45.3
Atru.chr10.360 Acer truncatum HOM05D004432 ORTHO05D005427 2.5e-33 147.1 200 50.5
Dinv01000 Davidia involucrata HOM05D004432 ORTHO05D005427 1.6e-27 127.9 162 49.4
Sopen12g027920 Solanum pennellii HOM05D004432 ORTHO05D005427 2.7e-27 127.1 71 80.3
Cfa025961 Carpinus fangiana HOM05D004432 ORTHO05D005427 2.4e-23 114.0 115 46.1
Cre06.g305200 Chlamydomonas reinhardtii HOM05D004432 ORTHO05D005427 1.2e-22 111.7 94 54.3
Aqoxy1G01395 Aquilegia oxysepala HOM05D004432 ORTHO05D005427 1.5e-22 111.3 358 31.3
MCO08G042 Micromonas commoda HOM05D004432 ORTHO05D005427 5.8e-22 109.4 89 61.8
GSVIVG01015874001 Vitis vinifera HOM05D004432 ORTHO05D005427 2.2e-21 107.5 65 76.9
SEGI_09071 Sequoiadendron giganteum HOM05D004432 ORTHO05D005427 1.9e-20 104.4 66 80.3
CAN.G958.2 Capsicum annuum HOM05D004432 ORTHO05D005427 1.3e-16 91.7 79 55.7
Pp3c19_17160 Physcomitrium patens HOM05D004432 ORTHO05D005427 5.8e-14 82.8 121 45.5
Psat6g089360 Pisum sativum HOM05D004432 ORTHO05D005427 6.0e-11 72.8 101 45.5
Psat7g229080 Pisum sativum HOM05D004432 ORTHO05D005427 3.7e-08 63.5 74 48.6
Lj1g0003853 Lotus japonicus HOM05D004432 ORTHO05D005427 1.8e-07 61.2 63 52.4
AUR62036780 Chenopodium quinoa HOM05D056044 ORTHO05D137976 2.0e-06 57.8 42 61.9


User provided reference genes

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