Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007032.2 Cucumis melo HOM05D005271 ORTHO05D006072 2.8e-52 208.4 107 100.0
CsaV3_6G052780 Cucumis sativus L. HOM05D005271 ORTHO05D006072 6.4e-49 197.2 107 94.4
ClCG01G025510 Citrullus lanatus HOM05D005271 ORTHO05D006072 3.3e-45 184.9 107 89.7
Sed0007631 Sechium edule HOM05D005271 ORTHO05D006072 3.1e-43 178.3 107 86.0
FAN16G1303 Fragaria x ananassa HOM05D005271 ORTHO05D006072 3.1e-35 151.8 107 74.8
CiPaw.09G137400 Carya illinoinensis HOM05D005271 ORTHO05D006072 5.2e-35 151.0 105 69.5
FAN21G0135 Fragaria x ananassa HOM05D005271 ORTHO05D006072 1.5e-34 149.4 107 73.8
FvH4_3g12930 Fragaria vesca HOM05D005271 ORTHO05D006072 2.0e-34 149.1 107 73.8
FAN11G1405 Fragaria x ananassa HOM05D005271 ORTHO05D006072 2.0e-34 149.1 107 73.8
FvH4_4g01060 Fragaria vesca HOM05D005271 ORTHO05D006072 2.6e-34 148.7 105 71.4
FAN12G2425 Fragaria x ananassa HOM05D005271 ORTHO05D006072 2.6e-34 148.7 105 71.4
Atru.chr1.851 Acer truncatum HOM05D005271 ORTHO05D006072 7.6e-34 147.1 105 72.4
Cfa001130 Carpinus fangiana HOM05D005271 ORTHO05D006072 2.9e-33 145.2 105 66.7
Prupe.4G117300 Prunus persica HOM05D005271 ORTHO05D006072 3.8e-33 144.8 105 67.6
RcHm_v2.0_Chr5g0021041 Rosa chinensis HOM05D005271 ORTHO05D006072 3.8e-33 144.8 107 71.0
Cpa.g.sc51.137 Carica papaya HOM05D005271 ORTHO05D006072 8.4e-33 143.7 107 72.0
FAN22G0530 Fragaria x ananassa HOM05D005271 ORTHO05D006072 8.4e-33 143.7 107 71.0
CSS0040197 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 1.4e-32 142.9 107 69.2
Duzib151G0973 Durio zibethinus HOM05D005271 ORTHO05D006072 1.4e-32 142.9 104 68.3
Manes.05G190800 Manihot esculenta HOM05D005271 ORTHO05D006072 1.4e-32 142.9 105 68.6
Gohir.D09G227900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 2.4e-32 142.1 104 67.3
Gorai.006G250600 Gossypium raimondii HOM05D005271 ORTHO05D006072 2.4e-32 142.1 104 67.3
Ciclev10017270m.g Citrus clementina HOM05D005271 ORTHO05D006072 3.2e-32 141.7 105 67.6
Gohir.A09G226900 Gossypium hirsutum HOM05D005271 ORTHO05D006072 4.2e-32 141.4 104 66.3
vmacro03554 Vaccinium macrocarpon HOM05D005271 ORTHO05D006072 7.1e-32 140.6 105 65.7
PGR142G2670 Punica granatum HOM05D005271 ORTHO05D006072 9.3e-32 140.2 107 67.3
QL11p012305 Quercus lobata HOM05D005271 ORTHO05D006072 3.5e-31 138.3 90 73.3
Dinv31186 Davidia involucrata HOM05D005271 ORTHO05D006072 6.0e-31 137.5 106 67.0
Potri.001G160500 Populus trichocarpa HOM05D005271 ORTHO05D006072 6.0e-31 137.5 107 65.4
Rhsim04G0167900 Rhododendron simsii HOM05D005271 ORTHO05D006072 6.0e-31 137.5 105 64.8
TWI15G1056 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 6.0e-31 137.5 107 66.4
Duzib212G0597 Durio zibethinus HOM05D005271 ORTHO05D006072 7.8e-31 137.1 104 62.5
Thecc.04G266100 Theobroma cacao HOM05D005271 ORTHO05D006072 2.3e-30 135.6 104 61.5
Lj2g0008924 Lotus japonicus HOM05D005271 ORTHO05D006072 3.0e-30 135.2 102 64.7
TWI63G0865 Tripterygium wilfordii HOM05D005271 ORTHO05D006072 3.0e-30 135.2 107 65.4
Nn7g38328 Nelumbo nucifera HOM05D005271 ORTHO05D006072 5.1e-30 134.4 106 67.0
Oeu017888.1 Olea europaea HOM05D005271 ORTHO05D006072 1.1e-29 133.3 105 62.9
Phvul.004G017800 Phaseolus vulgaris HOM05D005271 ORTHO05D006072 1.1e-29 133.3 102 64.7
AT1G05780 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 1.9e-29 132.5 107 64.5
PSO541G1812 Papaver somniferum HOM05D005271 ORTHO05D006072 1.9e-29 132.5 107 63.6
CANSAT25G1004 Cannabis sativa HOM05D005271 ORTHO05D006072 2.5e-29 132.1 89 71.9
Ca_28197_v3 Cicer arietinum L. HOM05D005271 ORTHO05D006072 2.5e-29 132.1 102 65.7
Cc10_g11580 Coffea canephora HOM05D005271 ORTHO05D006072 3.3e-29 131.7 107 64.5
Manes.01G042100 Manihot esculenta HOM05D005271 ORTHO05D006072 4.3e-29 131.3 105 61.9
Psat0s5346g0120 Pisum sativum HOM05D005271 ORTHO05D006072 4.3e-29 131.3 102 63.7
Nitab4.5_0004741g0030 Nicotiana tabacum HOM05D005271 ORTHO05D006072 5.6e-29 131.0 107 60.7
AL1G15680 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 7.3e-29 130.6 106 63.2
PSO675G0749 Papaver somniferum HOM05D005271 ORTHO05D006072 7.3e-29 130.6 107 61.7
Sabra01G0131700 Salix brachista HOM05D005271 ORTHO05D006072 7.3e-29 130.6 120 60.0
TAR627G0156 Trochodendron aralioides HOM05D005271 ORTHO05D006072 7.3e-29 130.6 106 67.0
Actinidia22429 Actinidia chinensis HOM05D005271 ORTHO05D006072 9.6e-29 130.2 106 63.2
arahy.Tifrunner.gnm1.ann1.0KQV7A Arachis hypogaea HOM05D005271 ORTHO05D006072 1.3e-28 129.8 103 62.1
arahy.Tifrunner.gnm1.ann1.31Z3CL Arachis hypogaea HOM05D005271 ORTHO05D006072 1.3e-28 129.8 103 62.1
Glyma.13G170400 Glycine max HOM05D005271 ORTHO05D006072 1.3e-28 129.8 103 65.0
Nitab4.5_0002741g0010 Nicotiana tabacum HOM05D005271 ORTHO05D006072 1.6e-28 129.4 107 61.7
TAR629G0996 Trochodendron aralioides HOM05D005271 ORTHO05D006072 1.6e-28 129.4 106 65.1
Aqoxy1G00251 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 2.1e-28 129.0 106 66.0
CAN.G350.33 Capsicum annuum HOM05D005271 ORTHO05D006072 2.1e-28 129.0 107 60.7
Aa31LG5G5280 Aethionema arabicum HOM05D005271 ORTHO05D006072 4.8e-28 127.9 105 60.0
VMungo0464G2009 Vigna mungo HOM05D005271 ORTHO05D006072 4.8e-28 127.9 102 61.8
Glyma.19G010500 Glycine max HOM05D005271 ORTHO05D006072 6.2e-28 127.5 105 65.7
PSO782G3340 Papaver somniferum HOM05D005271 ORTHO05D006072 6.2e-28 127.5 89 69.7
Hma1.2p1_0088F.1_g045170 Hydrangea macrophylla HOM05D005271 ORTHO05D006072 8.1e-28 127.1 106 64.2
Carub.0004s1300 Capsella rubella HOM05D005271 ORTHO05D006072 1.4e-27 126.3 105 60.0
arahy.Tifrunner.gnm1.ann1.5IT82G Arachis hypogaea HOM05D005271 ORTHO05D006072 1.8e-27 125.9 104 60.6
CARHR005290 Cardamine hirsuta HOM05D005271 ORTHO05D006072 1.8e-27 125.9 107 58.9
arahy.Tifrunner.gnm1.ann1.VX2J7C Arachis hypogaea HOM05D005271 ORTHO05D006072 2.4e-27 125.6 103 60.2
CARHR125350 Cardamine hirsuta HOM05D005271 ORTHO05D006072 2.4e-27 125.6 105 58.1
THA.LOC104800917 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 2.4e-27 125.6 105 61.0
Medtr6g017185 Medicago truncatula HOM05D005271 ORTHO05D006072 3.1e-27 125.2 103 60.2
DCAR_002456 Daucus carota HOM05D005271 ORTHO05D006072 4.0e-27 124.8 107 60.7
DCAR_002458 Daucus carota HOM05D005271 ORTHO05D006072 4.0e-27 124.8 107 60.7
Rhsim12G0144200 Rhododendron simsii HOM05D005271 ORTHO05D006072 4.0e-27 124.8 126 53.2
GSVIVG01012142001 Vitis vinifera HOM05D005271 ORTHO05D006072 4.0e-27 124.8 92 67.4
AT2G31710 Arabidopsis thaliana HOM05D005271 ORTHO05D006072 5.3e-27 124.4 105 60.0
A03p17850 Brassica napus HOM05D000364 ORTHO05D006072 5.3e-27 124.4 105 58.1
Gohir.A10G107101 Gossypium hirsutum HOM05D005271 ORTHO05D006072 6.9e-27 124.0 102 59.8
Sc10g0007720 Simmondsia chinensis HOM05D005271 ORTHO05D006072 6.9e-27 124.0 98 60.2
AL4G26950 Arabidopsis lyrata HOM05D005271 ORTHO05D006072 1.2e-26 123.2 105 60.0
BraA03t11049Z Brassica rapa HOM05D000364 ORTHO05D006072 1.2e-26 123.2 105 58.1
Thhalv10017819m.g Eutrema salsugineum HOM05D005271 ORTHO05D006072 1.2e-26 123.2 105 59.0
THA.LOC104815870 Tarenaya hassleriana HOM05D005271 ORTHO05D006072 1.5e-26 122.9 105 59.0
BcaC01g05934 Brassica carinata HOM05D000364 ORTHO05D006072 2.6e-26 122.1 105 58.1
C03p20920 Brassica napus HOM05D000364 ORTHO05D006072 2.6e-26 122.1 105 58.1
HanXRQChr14g0428301 Helianthus annuus HOM05D005271 ORTHO05D006072 3.4e-26 121.7 107 57.9
Oeu021212.1 Olea europaea HOM05D005271 ORTHO05D006072 4.5e-26 121.3 99 66.7
BcaB06g28531 Brassica carinata HOM05D005271 ORTHO05D006072 5.8e-26 120.9 105 56.2
C04p60870 Brassica napus HOM05D005271 ORTHO05D006072 5.8e-26 120.9 105 56.2
BolC4t27578H Brassica oleracea HOM05D005271 ORTHO05D006072 5.8e-26 120.9 105 56.2
SGA_v2.0_scaffold149G36579 Striga asiatica HOM05D005271 ORTHO05D006072 5.8e-26 120.9 107 58.9
ECA238G4336 Erigeron canadensis HOM05D005271 ORTHO05D006072 7.6e-26 120.6 107 56.1
PSO170G3626 Papaver somniferum HOM05D005271 ORTHO05D006072 1.3e-25 119.8 84 69.0
SalBow1G3231 Salvia bowleyana HOM05D005271 ORTHO05D006072 1.3e-25 119.8 105 62.9
arahy.Tifrunner.gnm1.ann1.FU3306 Arachis hypogaea HOM05D005271 ORTHO05D006072 1.7e-25 119.4 103 58.3
A04p24140 Brassica napus HOM05D005271 ORTHO05D006072 1.7e-25 119.4 105 55.2
BraA04t17934Z Brassica rapa HOM05D005271 ORTHO05D006072 2.2e-25 119.0 105 56.2
BcaB01g04025 Brassica carinata HOM05D005271 ORTHO05D006072 2.9e-25 118.6 99 58.6
SalBow6G1192 Salvia bowleyana HOM05D005271 ORTHO05D006072 2.9e-25 118.6 105 61.9
Ah.01g016950 Amaranthus hybridus HOM05D005271 ORTHO05D006072 3.8e-25 118.2 94 57.4
Migut.C01265 Erythranthe guttata HOM05D005271 ORTHO05D006072 3.8e-25 118.2 107 60.7
EL10Ac1g00803 Beta vulgaris HOM05D005271 ORTHO05D006072 4.9e-25 117.9 85 67.1
MD10G1227700 Malus domestica HOM05D005271 ORTHO05D006072 4.9e-25 117.9 93 61.3
Peaxi162Scf00004g02726 Petunia axillaris HOM05D005271 ORTHO05D006072 6.4e-25 117.5 125 52.0
Migut.N03355 Erythranthe guttata HOM05D005271 ORTHO05D006072 8.4e-25 117.1 105 57.1
Ah.05g173390 Amaranthus hybridus HOM05D005271 ORTHO05D006072 1.4e-24 116.3 95 57.9
Cc03_g07280 Coffea canephora HOM05D005271 ORTHO05D006072 1.9e-24 115.9 92 64.1
HanXRQChr06g0184021 Helianthus annuus HOM05D005271 ORTHO05D006072 2.4e-24 115.5 107 57.9
CDE05G0701 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 4.2e-24 114.8 97 61.9
Lalb_Chr02g0160001 Lupinus albus HOM05D005271 ORTHO05D006072 4.2e-24 114.8 102 58.8
Lalb_Chr02g0160211 Lupinus albus HOM05D005271 ORTHO05D006072 4.2e-24 114.8 102 58.8
MD05G1247100 Malus domestica HOM05D005271 ORTHO05D006072 4.2e-24 114.8 93 63.4
MSTRG.22460 Avicennia marina HOM05D005271 ORTHO05D006072 5.4e-24 114.4 102 59.8
Lsat_1_v5_gn_2_4960 Lactuca sativa HOM05D005271 ORTHO05D006072 7.1e-24 114.0 113 51.3
CDE05G1696 Ceratophyllum demersum HOM05D005271 ORTHO05D006072 9.3e-24 113.6 94 64.9
Sopen11g025310 Solanum pennellii HOM05D005271 ORTHO05D006072 2.1e-23 112.5 93 60.2
HPP92_012976 Vanilla planifolia HOM05D005271 ORTHO05D006072 3.5e-23 111.7 108 53.7
C04p18180 Brassica napus HOM05D005271 ORTHO05D006072 7.9e-23 110.5 107 55.1
AUR62023913 Chenopodium quinoa HOM05D005271 ORTHO05D006072 1.3e-22 109.8 89 57.3
BolC4t23374H Brassica oleracea HOM05D005271 ORTHO05D006072 2.3e-22 109.0 106 53.8
ATR1120G033 Amborella trichopoda HOM05D005271 ORTHO05D006072 6.7e-22 107.5 106 52.8
BcaB02g10411 Brassica carinata HOM05D000896 ORTHO05D006072 8.7e-22 107.1 107 55.1
AUR62038333 Chenopodium quinoa HOM05D005271 ORTHO05D006072 8.7e-22 107.1 88 55.7
SGA_v2.0_scaffold118G32500 Striga asiatica HOM05D005271 ORTHO05D006072 8.7e-22 107.1 107 56.1
BcaC02g11279 Brassica carinata HOM05D005271 ORTHO05D006072 1.1e-21 106.7 107 54.2
A05p13810 Brassica napus HOM05D005271 ORTHO05D006072 1.1e-21 106.7 103 53.4
SalBow7G2991 Salvia bowleyana HOM05D005271 ORTHO05D006072 5.6e-21 104.4 105 56.2
unitig_0.g914 Utricularia gibba HOM05D000362 ORTHO05D000325 1.1e-19 100.1 107 48.6
CSS0024418 Camellia sinensis var. sinensis HOM05D005271 ORTHO05D006072 2.0e-18 95.9 75 70.7
Haze_05264 Corylus avellana HOM05D005271 ORTHO05D006072 2.0e-18 95.9 73 67.1
Zm00001eb071020 Zea mays HOM05D005271 ORTHO05D006072 3.4e-18 95.1 92 53.3
Os04g0612900 Oryza sativa ssp. japonica HOM05D005271 ORTHO05D006072 7.6e-18 94.0 92 54.3
MBI02_g01139_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 1.7e-17 92.8 75 69.3
COL.COLO4_15978 Corchorus olitorius HOM05D005271 ORTHO05D006072 6.4e-17 90.9 73 63.0
Eucgr.H02355 Eucalyptus grandis HOM05D005271 ORTHO05D006072 8.4e-17 90.5 73 65.8
Hund17073 Selenicereus undatus HOM05D005271 ORTHO05D006072 4.2e-16 88.2 60 73.3
MBI14_g01725_MAGBIO Magnolia biondii HOM05D005271 ORTHO05D006072 7.1e-16 87.4 73 69.9
Pp3c12_11530 Physcomitrium patens HOM05D005271 ORTHO05D006072 5.1e-14 81.3 100 46.0
PGSC0003DMG400010917 Solanum tuberosum HOM05D005271 ORTHO05D006072 5.1e-14 81.3 73 58.9
SMO300G0007 Selaginella moellendorffii HOM05D005271 ORTHO05D006072 1.5e-13 79.7 83 47.0
Mapoly0098s0021 Marchantia polymorpha HOM05D005271 ORTHO05D006072 3.3e-13 78.6 92 45.7
EL10Ac9g21107 Beta vulgaris HOM05D005271 ORTHO05D006072 4.3e-13 78.2 69 60.9
Hund00748 Selenicereus undatus HOM05D005271 ORTHO05D006072 7.4e-13 77.4 67 58.2
AUR62004132 Chenopodium quinoa HOM05D005271 ORTHO05D006072 1.3e-12 76.6 52 76.9
Aqoxy3G03156 Aquilegia oxysepala HOM05D005271 ORTHO05D006072 3.4e-10 68.6 69 60.9
Zm00001eb430740 Zea mays HOM05D005271 ORTHO05D006072 1.4e-08 63.2 108 43.5
CBR_g30301 Chara braunii HOM05D005271 ORTHO05D006072 6.0e-07 57.8 70 41.4


User provided reference genes

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