Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007014.2 Cucumis melo HOM05D006312 ORTHO05D007843 3.9e-131 471.5 240 100.0
CsaV3_6G052950 Cucumis sativus L. HOM05D006312 ORTHO05D007843 1.8e-88 329.7 173 96.0
ClCG01G025710 Citrullus lanatus HOM05D006312 ORTHO05D007843 6.8e-83 311.2 184 85.3
Sed0011609 Sechium edule HOM05D006312 ORTHO05D007843 9.2e-80 300.8 179 82.7
COL.COLO4_27421 Corchorus olitorius HOM05D006312 ORTHO05D007843 1.9e-56 223.4 185 61.6
Thecc.05G202100 Theobroma cacao HOM05D006312 ORTHO05D007843 4.6e-55 218.8 189 61.4
Aqoxy6G03048 Aquilegia oxysepala HOM05D006312 ORTHO05D007843 7.8e-55 218.0 133 78.9
Eucgr.J02573 Eucalyptus grandis HOM05D006312 ORTHO05D007843 7.8e-55 218.0 186 60.8
Atru.chr2.1887 Acer truncatum HOM05D006312 ORTHO05D007843 1.3e-54 217.2 189 64.0
Prupe.7G188400 Prunus persica HOM05D006312 ORTHO05D007843 2.3e-54 216.5 187 61.0
Sabra16G0308500 Salix brachista HOM05D006312 ORTHO05D007843 3.0e-54 216.1 180 62.2
TAR376G0343 Trochodendron aralioides HOM05D006312 ORTHO05D007843 3.9e-54 215.7 170 62.9
Potri.001G455900 Populus trichocarpa HOM05D006312 ORTHO05D007843 5.1e-54 215.3 180 61.7
CANSAT21G2119 Cannabis sativa HOM05D006312 ORTHO05D007843 8.7e-54 214.5 132 75.8
Hund13396 Selenicereus undatus HOM05D006312 ORTHO05D007843 8.7e-54 214.5 130 76.2
RcHm_v2.0_Chr2g0096661 Rosa chinensis HOM05D006312 ORTHO05D007843 1.1e-53 214.2 187 61.0
Ciclev10012864m.g Citrus clementina HOM05D006312 ORTHO05D007843 1.5e-53 213.8 130 79.2
CSS0005301 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 2.5e-53 213.0 140 73.6
CSS0026635 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 2.5e-53 213.0 133 75.9
Cpa.g.sc178.37 Carica papaya HOM05D006312 ORTHO05D007843 1.3e-52 210.7 149 68.5
MBI04_g11525_MAGBIO Magnolia biondii HOM05D006312 ORTHO05D007843 1.3e-52 210.7 143 69.9
PGR102G2008 Punica granatum HOM05D006312 ORTHO05D007843 1.3e-52 210.7 134 76.1
Actinidia28758 Actinidia chinensis HOM05D006312 ORTHO05D007843 3.6e-52 209.1 142 72.5
Hma1.2p1_0034F.1_g021580 Hydrangea macrophylla HOM05D006312 ORTHO05D007843 4.8e-52 208.8 139 73.4
Manes.02G117611 Manihot esculenta HOM05D006312 ORTHO05D007843 4.8e-52 208.8 183 63.9
Gorai.013G007100 Gossypium raimondii HOM05D006312 ORTHO05D007843 8.1e-52 208.0 177 61.0
MD02G1107600 Malus domestica HOM05D006312 ORTHO05D007843 8.1e-52 208.0 189 58.2
Ca_08638_v3 Cicer arietinum L. HOM05D006312 ORTHO05D007843 1.4e-51 207.2 141 71.6
Sc10g0004590 Simmondsia chinensis HOM05D006312 ORTHO05D007843 6.9e-51 204.9 146 70.5
Actinidia35692 Actinidia chinensis HOM05D006312 ORTHO05D007843 9.0e-51 204.5 141 70.9
VMungo1383G0261 Vigna mungo HOM05D006312 ORTHO05D007843 9.0e-51 204.5 137 70.1
Cfa007119 Carpinus fangiana HOM05D006312 ORTHO05D007843 1.2e-50 204.1 140 69.3
Glyma.03G158200 Glycine max HOM05D006312 ORTHO05D007843 1.2e-50 204.1 148 66.9
Gohir.D13G006900 Gossypium hirsutum HOM05D006312 ORTHO05D007843 1.2e-50 204.1 177 59.9
Gohir.A13G006700 Gossypium hirsutum HOM05D006312 ORTHO05D007843 1.5e-50 203.8 125 76.0
Rhsim08G0025300 Rhododendron simsii HOM05D006312 ORTHO05D007843 2.6e-50 203.0 143 70.6
TPR.G19116 Trifolium pratense HOM05D006312 ORTHO05D007843 2.6e-50 203.0 132 72.7
Psat3g060840 Pisum sativum HOM05D006312 ORTHO05D007843 4.5e-50 202.2 135 74.1
arahy.Tifrunner.gnm1.ann1.YWP2KZ Arachis hypogaea HOM05D006312 ORTHO05D007843 7.6e-50 201.4 147 66.7
Phvul.001G155800 Phaseolus vulgaris HOM05D006312 ORTHO05D007843 7.6e-50 201.4 139 67.6
ATR0605G230 Amborella trichopoda HOM05D006312 ORTHO05D007843 9.9e-50 201.1 126 73.8
FAN19G0451 Fragaria x ananassa HOM05D006312 ORTHO05D007843 1.7e-49 200.3 186 59.1
arahy.Tifrunner.gnm1.ann1.Y34PHS Arachis hypogaea HOM05D006312 ORTHO05D007843 2.2e-49 199.9 140 68.6
FvH4_1g09790 Fragaria vesca HOM05D006312 ORTHO05D007843 2.2e-49 199.9 186 59.1
FAN23G0139 Fragaria x ananassa HOM05D006312 ORTHO05D007843 2.2e-49 199.9 186 59.1
FAN26G2993 Fragaria x ananassa HOM05D006312 ORTHO05D007843 2.2e-49 199.9 186 59.1
PSO541G2566 Papaver somniferum HOM05D006312 ORTHO05D007843 2.2e-49 199.9 134 73.1
Lsat_1_v5_gn_3_68340 Lactuca sativa HOM05D006312 ORTHO05D007843 2.9e-49 199.5 188 55.9
FAN23G3058 Fragaria x ananassa HOM05D006312 ORTHO05D007843 3.8e-49 199.1 189 58.2
PSO675G2564 Papaver somniferum HOM05D006312 ORTHO05D007843 8.4e-49 198.0 134 73.1
TWI34G0319 Tripterygium wilfordii HOM05D006312 ORTHO05D007843 8.4e-49 198.0 189 57.1
EL10Ac2g02752 Beta vulgaris HOM05D006312 ORTHO05D007843 1.1e-48 197.6 144 66.0
AUR62031725 Chenopodium quinoa HOM05D006312 ORTHO05D007843 1.4e-48 197.2 135 68.9
FAN28G0218 Fragaria x ananassa HOM05D006312 ORTHO05D007843 2.4e-48 196.4 187 56.7
Glyma.19G160500 Glycine max HOM05D006312 ORTHO05D007843 9.3e-48 194.5 144 65.3
A01p23400 Brassica napus HOM05D006312 ORTHO05D007843 2.1e-47 193.4 163 62.0
BraA01t02247Z Brassica rapa HOM05D006312 ORTHO05D007843 2.1e-47 193.4 163 62.0
AUR62032612 Chenopodium quinoa HOM05D006312 ORTHO05D007843 2.7e-47 193.0 133 68.4
Potri.011G146200 Populus trichocarpa HOM05D006312 ORTHO05D007843 1.3e-46 190.7 112 78.6
Lj1g0018795 Lotus japonicus HOM05D006312 ORTHO05D007843 1.8e-46 190.3 175 56.0
AL5G31950 Arabidopsis lyrata HOM05D006312 ORTHO05D007843 2.3e-46 189.9 187 57.2
Medtr7g095930 Medicago truncatula HOM05D006312 ORTHO05D007843 2.3e-46 189.9 142 66.9
C01p29030 Brassica napus HOM05D006312 ORTHO05D007843 5.1e-46 188.7 163 60.7
BolC1t02835H Brassica oleracea HOM05D006312 ORTHO05D007843 5.1e-46 188.7 163 60.7
BcaNung00380 Brassica carinata HOM05D006312 ORTHO05D007843 8.7e-46 188.0 139 66.2
DCAR_016700 Daucus carota HOM05D006312 ORTHO05D007843 1.1e-45 187.6 179 55.9
AT3G51510 Arabidopsis thaliana HOM05D006312 ORTHO05D007843 1.5e-45 187.2 168 60.7
Cc07_g12330 Coffea canephora HOM05D006312 ORTHO05D007843 1.5e-45 187.2 138 64.5
CARHR161090 Cardamine hirsuta HOM05D006312 ORTHO05D007843 1.9e-45 186.8 146 63.7
HanXRQChr16g0532211 Helianthus annuus HOM05D006312 ORTHO05D007843 1.9e-45 186.8 134 69.4
Sp5g10730 Schrenkiella parvula HOM05D006312 ORTHO05D007843 1.9e-45 186.8 149 62.4
QL06p053470 Quercus lobata HOM05D006312 ORTHO05D007843 2.5e-45 186.4 149 65.1
THA.LOC104815359 Tarenaya hassleriana HOM05D006312 ORTHO05D007843 4.3e-45 185.7 134 68.7
Nitab4.5_0003141g0020 Nicotiana tabacum HOM05D006312 ORTHO05D007843 9.6e-45 184.5 172 57.0
Carub.0005s1789 Capsella rubella HOM05D006312 ORTHO05D007843 1.3e-44 184.1 150 62.0
Oeu024786.1 Olea europaea HOM05D006312 ORTHO05D007843 2.1e-44 183.3 141 65.2
A09p44660 Brassica napus HOM05D006312 ORTHO05D007843 2.8e-44 183.0 167 57.5
ECA246G0189 Erigeron canadensis HOM05D006312 ORTHO05D007843 2.8e-44 183.0 143 64.3
Nitab4.5_0003878g0040 Nicotiana tabacum HOM05D006312 ORTHO05D007843 2.8e-44 183.0 137 67.9
THA.LOC104808852 Tarenaya hassleriana HOM05D006312 ORTHO05D007843 3.7e-44 182.6 135 66.7
C08p26760 Brassica napus HOM05D006312 ORTHO05D007843 4.8e-44 182.2 151 60.9
BolC8t50289H Brassica oleracea HOM05D006312 ORTHO05D007843 4.8e-44 182.2 151 60.9
CAN.G883.25 Capsicum annuum HOM05D006312 ORTHO05D007843 4.8e-44 182.2 147 63.9
MSTRG.3652 Avicennia marina HOM05D006312 ORTHO05D007843 1.1e-43 181.0 143 65.0
BcaB01g00508 Brassica carinata HOM05D006312 ORTHO05D007843 1.4e-43 180.6 151 60.9
SEGI_12518 Sequoiadendron giganteum HOM05D006312 ORTHO05D007843 1.4e-43 180.6 144 61.8
Thhalv10010756m.g Eutrema salsugineum HOM05D006312 ORTHO05D007843 1.8e-43 180.3 131 65.6
Dinv28290 Davidia involucrata HOM05D006312 ORTHO05D007843 2.4e-43 179.9 125 69.6
Dinv24398 Davidia involucrata HOM05D006312 ORTHO05D007843 3.1e-43 179.5 124 69.4
BraA09t39926Z Brassica rapa HOM05D006312 ORTHO05D007843 4.0e-43 179.1 150 60.7
Solyc02g068270.4 Solanum lycopersicum HOM05D006312 ORTHO05D007843 9.0e-43 177.9 139 61.9
Sopen02g017370 Solanum pennellii HOM05D006312 ORTHO05D007843 9.0e-43 177.9 140 62.1
Peaxi162Scf00981g00214 Petunia axillaris HOM05D006312 ORTHO05D007843 1.5e-42 177.2 121 69.4
CDE07G0026 Ceratophyllum demersum HOM05D006312 ORTHO05D007843 4.5e-42 175.6 181 56.4
SalBow5G1176 Salvia bowleyana HOM05D006312 ORTHO05D007843 5.8e-42 175.3 118 70.3
HPP92_005603 Vanilla planifolia HOM05D006312 ORTHO05D007843 5.8e-42 175.3 133 62.4
SGA_v2.0_scaffold132G34566 Striga asiatica HOM05D006312 ORTHO05D007843 1.3e-41 174.1 118 67.8
Migut.K01209 Erythranthe guttata HOM05D006312 ORTHO05D007843 2.9e-41 172.9 137 62.8
FAN23G0893 Fragaria x ananassa HOM05D006312 ORTHO05D007843 2.9e-41 172.9 103 77.7
CiPaw.08G182900 Carya illinoinensis HOM05D006312 ORTHO05D007843 1.1e-40 171.0 116 72.4
Lalb_Chr01g0019941 Lupinus albus HOM05D006312 ORTHO05D007843 1.9e-40 170.2 129 67.4
Zm00001eb291320 Zea mays HOM05D006312 ORTHO05D007843 2.4e-40 169.9 117 69.2
Nn6g34643 Nelumbo nucifera HOM05D006312 ORTHO05D007843 2.1e-39 166.8 145 57.2
MD15G1226900 Malus domestica HOM05D006312 ORTHO05D007843 1.3e-38 164.1 164 56.1
vmacro18480 Vaccinium macrocarpon HOM05D006312 ORTHO05D007843 1.8e-38 163.7 113 71.7
Os05g0490900 Oryza sativa ssp. japonica HOM05D006312 ORTHO05D007843 5.1e-38 162.2 140 60.0
Haze_03648 Corylus avellana HOM05D006312 ORTHO05D007843 3.3e-37 159.5 114 67.5
Hma1.2p1_0034F.1_g021590 Hydrangea macrophylla HOM05D006312 ORTHO05D007843 3.3e-37 159.5 113 69.9
Lj2A507T48 Lonicera japonica HOM05D006312 ORTHO05D007843 2.8e-36 156.4 113 67.3
Ah.12g058670 Amaranthus hybridus HOM05D006312 ORTHO05D007843 2.0e-34 150.2 95 74.7
unitig_748.g7258 Utricularia gibba HOM05D006312 ORTHO05D007843 2.0e-34 150.2 134 56.0
AUR62037337 Chenopodium quinoa HOM05D006312 ORTHO05D007843 1.3e-33 147.5 161 50.9
AagrBONN_evm.TU.Sc2ySwM_117.3170 Anthoceros agrestis HOM05D006312 ORTHO05D007843 2.9e-33 146.4 142 51.4
GSVIVG01026613001 Vitis vinifera HOM05D006312 ORTHO05D007843 3.8e-33 146.0 88 72.7
SMO356G0733 Selaginella moellendorffii HOM05D006312 ORTHO05D007843 1.0e-30 137.9 110 57.3
Mapoly0072s0008 Marchantia polymorpha HOM05D006312 ORTHO05D007843 2.3e-30 136.7 122 52.5
CBR_g16852 Chara braunii HOM05D006312 ORTHO05D007843 1.3e-28 131.0 111 55.9
Pp3c12_25230 Physcomitrium patens HOM05D006312 ORTHO05D007843 5.3e-27 125.6 167 40.7
Cre16.g679300 Chlamydomonas reinhardtii HOM05D006312 ORTHO05D007843 2.0e-18 97.1 144 41.0
MCO03G312 Micromonas commoda HOM05D006312 ORTHO05D007843 7.2e-16 88.6 98 45.9
Aa31LG10G3290 Aethionema arabicum HOM05D001371 ORTHO05D001319 2.7e-15 86.7 74 58.1
CSS0018042 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 5.1e-14 82.4 51 74.5
CSS0013138 Camellia sinensis var. sinensis HOM05D006312 ORTHO05D007843 1.0e-09 68.2 61 52.5
PRCOL_00002065 Prasinoderma coloniale HOM05D006312 ORTHO05D007843 9.4e-08 61.6 81 43.2
Manes.01G158400 Manihot esculenta HOM05D006312 ORTHO05D007843 1.0e-06 58.2 65 55.4


User provided reference genes

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