Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007010.2 Cucumis melo HOM05D005903 ORTHO05D007293 2.4e-209 731.9 362 100.0
CsaV3_6G052990 Cucumis sativus L. HOM05D005903 ORTHO05D007293 1.9e-190 669.1 341 96.5
ClCG01G025750 Citrullus lanatus HOM05D005903 ORTHO05D007293 3.6e-176 621.7 341 90.0
Sed0025041 Sechium edule HOM05D005903 ORTHO05D007293 1.5e-145 520.0 335 80.3
QL11p012010 Quercus lobata HOM05D005903 ORTHO05D007293 2.3e-130 469.5 334 65.6
Gohir.D11G050900 Gossypium hirsutum HOM05D005903 ORTHO05D007293 3.8e-130 468.8 332 67.5
Gorai.007G055300 Gossypium raimondii HOM05D005903 ORTHO05D007293 3.8e-130 468.8 332 67.5
Gohir.A11G047300 Gossypium hirsutum HOM05D005903 ORTHO05D007293 1.1e-129 467.2 332 66.9
Cpa.g.sc30.99 Carica papaya HOM05D005903 ORTHO05D007293 1.2e-128 463.8 332 67.5
Manes.03G070940 Manihot esculenta HOM05D005903 ORTHO05D007293 3.6e-128 462.2 333 67.0
FAN21G0687 Fragaria x ananassa HOM05D005903 ORTHO05D007293 8.0e-128 461.1 336 67.0
FAN16G3015 Fragaria x ananassa HOM05D005903 ORTHO05D007293 1.4e-127 460.3 336 67.0
TAR624G0428 Trochodendron aralioides HOM05D005903 ORTHO05D007293 3.0e-127 459.1 333 66.7
CiPaw.09G138500 Carya illinoinensis HOM05D005903 ORTHO05D007293 8.9e-127 457.6 331 66.2
Thecc.02G003100 Theobroma cacao HOM05D005903 ORTHO05D007293 8.9e-127 457.6 333 65.5
FAN11G1857 Fragaria x ananassa HOM05D005903 ORTHO05D007293 3.4e-126 455.7 336 66.4
GSVIVG01012154001 Vitis vinifera HOM05D005903 ORTHO05D007293 3.4e-126 455.7 333 67.3
Dinv07001 Davidia involucrata HOM05D005903 ORTHO05D007293 5.7e-126 454.9 325 67.1
FvH4_3g13050 Fragaria vesca HOM05D005903 ORTHO05D007293 9.8e-126 454.1 336 66.1
Atru.chr10.296 Acer truncatum HOM05D005903 ORTHO05D007293 2.2e-125 453.0 335 63.6
Potri.001G076200 Populus trichocarpa HOM05D005903 ORTHO05D007293 2.2e-125 453.0 326 67.8
Nn7g38356 Nelumbo nucifera HOM05D005903 ORTHO05D007293 3.7e-125 452.2 335 65.4
Nitab4.5_0010610g0030 Nicotiana tabacum HOM05D005903 ORTHO05D007293 3.7e-125 452.2 333 63.7
FAN25G2454 Fragaria x ananassa HOM05D005903 ORTHO05D007293 1.1e-124 450.7 336 66.1
RcHm_v2.0_Chr5g0021241 Rosa chinensis HOM05D005903 ORTHO05D007293 3.2e-124 449.1 336 65.5
PGR044G2521 Punica granatum HOM05D005903 ORTHO05D007293 4.1e-124 448.7 335 64.8
EL10Ac5g11217 Beta vulgaris HOM05D005903 ORTHO05D007293 7.0e-124 448.0 333 63.1
AT3G47630 Arabidopsis thaliana HOM05D005903 ORTHO05D007293 1.6e-123 446.8 332 65.7
Carub.0005s1376 Capsella rubella HOM05D005903 ORTHO05D007293 5.9e-123 444.9 332 65.1
Nitab4.5_0000844g0290 Nicotiana tabacum HOM05D005903 ORTHO05D007293 7.8e-123 444.5 329 63.5
Hma1.2p1_0088F.1_g045276 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 1.0e-122 444.1 333 63.4
MD05G1245400 Malus domestica HOM05D005903 ORTHO05D007293 1.3e-122 443.7 336 63.4
BraA06t25085Z Brassica rapa HOM05D005903 ORTHO05D007293 3.0e-122 442.6 330 65.5
THA.LOC104824626 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 5.0e-122 441.8 365 61.1
Thhalv10011094m.g Eutrema salsugineum HOM05D005903 ORTHO05D007293 6.6e-122 441.4 332 65.1
AL5G26920 Arabidopsis lyrata HOM05D005903 ORTHO05D007293 8.6e-122 441.0 332 65.1
Eucgr.A00192 Eucalyptus grandis HOM05D005903 ORTHO05D007293 1.1e-121 440.7 325 65.2
Solyc02g081840.4 Solanum lycopersicum HOM05D005903 ORTHO05D007293 1.1e-121 440.7 333 63.1
BolC8t51059H Brassica oleracea HOM05D005903 ORTHO05D007293 1.5e-121 440.3 332 65.1
A06p19990 Brassica napus HOM05D005903 ORTHO05D007293 1.9e-121 439.9 330 65.2
C08p34580 Brassica napus HOM05D005903 ORTHO05D007293 3.3e-121 439.1 332 65.1
PGSC0003DMG400007316 Solanum tuberosum HOM05D005903 ORTHO05D007293 4.3e-121 438.7 333 62.8
BcaC01g01793 Brassica carinata HOM05D005903 ORTHO05D007293 5.6e-121 438.3 332 64.2
BcaC07g40489 Brassica carinata HOM05D005903 ORTHO05D007293 5.6e-121 438.3 332 65.1
C03p71840 Brassica napus HOM05D005903 ORTHO05D007293 5.6e-121 438.3 332 64.2
BolC3t19474H Brassica oleracea HOM05D005903 ORTHO05D007293 7.3e-121 438.0 332 64.2
CARHR156310 Cardamine hirsuta HOM05D005903 ORTHO05D007293 1.2e-120 437.2 332 63.9
THA.LOC104812245 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 1.2e-120 437.2 368 60.3
CAN.G809.52 Capsicum annuum HOM05D005903 ORTHO05D007293 1.6e-120 436.8 332 62.0
Sp1g31680 Schrenkiella parvula HOM05D005903 ORTHO05D007293 1.6e-120 436.8 332 62.7
CANSAT35G1866 Cannabis sativa HOM05D005903 ORTHO05D007293 4.7e-120 435.3 337 63.8
Aa31LG9G16250 Aethionema arabicum HOM05D005903 ORTHO05D007293 8.0e-120 434.5 332 63.6
Medtr4g094760 Medicago truncatula HOM05D005903 ORTHO05D007293 8.0e-120 434.5 325 62.5
vmacro03560 Vaccinium macrocarpon HOM05D005903 ORTHO05D007293 1.8e-119 433.3 349 60.5
BraA09t40620Z Brassica rapa HOM05D005903 ORTHO05D007293 2.3e-119 433.0 332 63.6
DCAR_003756 Daucus carota HOM05D005903 ORTHO05D007293 2.3e-119 433.0 369 58.5
VMungo0251G1440 Vigna mungo HOM05D005903 ORTHO05D007293 4.0e-119 432.2 331 62.5
Cc09_g05110 Coffea canephora HOM05D005903 ORTHO05D007293 5.2e-119 431.8 337 62.3
BcaB01g00896 Brassica carinata HOM05D005903 ORTHO05D007293 8.9e-119 431.0 332 64.2
Migut.M02015 Erythranthe guttata HOM05D005903 ORTHO05D007293 3.4e-118 429.1 323 61.6
A09p51850 Brassica napus HOM05D005903 ORTHO05D007293 4.4e-118 428.7 332 63.0
TPR.G23817 Trifolium pratense HOM05D005903 ORTHO05D007293 5.8e-118 428.3 323 62.5
AUR62036920 Chenopodium quinoa HOM05D005903 ORTHO05D007293 7.5e-118 427.9 335 60.6
Migut.G01043 Erythranthe guttata HOM05D005903 ORTHO05D007293 1.7e-117 426.8 332 59.6
Ca_18231_v3 Cicer arietinum L. HOM05D005903 ORTHO05D007293 4.9e-117 425.2 325 61.2
Dinv26323 Davidia involucrata HOM05D005903 ORTHO05D007293 8.3e-117 424.5 333 63.1
Lj4g0014401 Lotus japonicus HOM05D005903 ORTHO05D007293 1.9e-116 423.3 325 61.2
Glyma.05G134300 Glycine max HOM05D005903 ORTHO05D007293 1.6e-115 420.2 331 60.7
Glyma.08G089000 Glycine max HOM05D005903 ORTHO05D007293 1.6e-115 420.2 329 61.1
Hund09980 Selenicereus undatus HOM05D005903 ORTHO05D007293 3.0e-114 416.0 381 55.1
Lsat_1_v5_gn_1_24420 Lactuca sativa HOM05D005903 ORTHO05D007293 3.9e-114 415.6 322 62.4
PSO675G2427 Papaver somniferum HOM05D005903 ORTHO05D007293 1.1e-113 414.1 330 58.8
Cc00_g27340 Coffea canephora HOM05D005903 ORTHO05D007293 3.3e-113 412.5 325 62.2
Aqoxy7G00859 Aquilegia oxysepala HOM05D005903 ORTHO05D007293 1.2e-112 410.6 329 62.3
Ciclev10016117m.g Citrus clementina HOM05D005903 ORTHO05D007293 1.4e-111 407.1 297 65.3
HanXRQChr12g0369311 Helianthus annuus HOM05D005903 ORTHO05D007293 1.7e-109 400.2 322 59.9
TWI63G1157 Tripterygium wilfordii HOM05D005903 ORTHO05D007293 1.7e-109 400.2 333 59.2
CSS0034787 Camellia sinensis var. sinensis HOM05D005903 ORTHO05D007293 4.9e-109 398.7 317 61.2
Duzib052G0373 Durio zibethinus HOM05D005903 ORTHO05D007293 1.4e-108 397.1 355 58.6
Rhsim13G0219000 Rhododendron simsii HOM05D005903 ORTHO05D007293 3.5e-107 392.5 335 58.5
Hma1.2p1_1011F.1_g247520 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 4.6e-107 392.1 347 58.2
Sabra01G0053000 Salix brachista HOM05D005903 ORTHO05D007293 6.0e-107 391.7 328 61.3
ECA247G0018 Erigeron canadensis HOM05D005903 ORTHO05D007293 1.7e-106 390.2 322 59.3
Hma1.2p1_0088F.1_g045273 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 8.6e-106 387.9 347 57.6
Rhsim05G0003000 Rhododendron simsii HOM05D005903 ORTHO05D007293 5.6e-105 385.2 386 52.8
Dinv01020 Davidia involucrata HOM05D005903 ORTHO05D007293 1.4e-103 380.6 325 58.8
arahy.Tifrunner.gnm1.ann1.7A7AL1 Arachis hypogaea HOM05D005903 ORTHO05D007293 1.2e-102 377.5 334 55.7
ATR0605G282 Amborella trichopoda HOM05D005903 ORTHO05D007293 2.0e-102 376.7 330 58.8
Haze_05254 Corylus avellana HOM05D005903 ORTHO05D007293 2.4e-100 369.8 331 57.4
Psat7g087640 Pisum sativum HOM05D005903 ORTHO05D007293 2.3e-98 363.2 252 64.3
Rhsim07G0106900 Rhododendron simsii HOM05D005903 ORTHO05D007293 9.6e-97 357.8 334 54.5
AUR62032162 Chenopodium quinoa HOM05D005903 ORTHO05D007293 1.1e-95 354.4 281 61.6
PSO675G2002 Papaver somniferum HOM05D005903 ORTHO05D007293 6.9e-95 351.7 326 52.5
SGA_v2.0_scaffold31G12765 Striga asiatica HOM05D005903 ORTHO05D007293 3.4e-94 349.4 326 54.0
Lj1C1150G3 Lonicera japonica HOM05D005903 ORTHO05D007293 5.8e-94 348.6 294 60.2
Prupe.7G025500 Prunus persica HOM05D005903 ORTHO05D007293 3.5e-91 339.3 236 67.4
Sopen02g026460 Solanum pennellii HOM05D005903 ORTHO05D007293 6.6e-90 335.1 258 64.0
Phvul.002G188100 Phaseolus vulgaris HOM05D005903 ORTHO05D007293 8.7e-90 334.7 268 61.9
HPP92_021274 Vanilla planifolia HOM05D005903 ORTHO05D007293 1.1e-89 334.3 326 52.1
Prupe.4G118500 Prunus persica HOM05D005903 ORTHO05D007293 1.8e-87 327.0 249 66.7
Peaxi162Scf00036g02217 Petunia axillaris HOM05D005903 ORTHO05D007293 2.0e-86 323.6 297 53.5
CDE06G1059 Ceratophyllum demersum HOM05D005903 ORTHO05D007293 3.8e-85 319.3 337 52.5
SEGI_28167 Sequoiadendron giganteum HOM05D005903 ORTHO05D007293 1.6e-83 313.9 330 50.3
COL.COLO4_05791 Corchorus olitorius HOM05D005903 ORTHO05D007293 3.5e-83 312.8 189 75.1
arahy.Tifrunner.gnm1.ann1.STP4KF Arachis hypogaea HOM05D005903 ORTHO05D007293 2.0e-78 297.0 336 47.0
Lalb_Chr07g0188231 Lupinus albus HOM05D005903 ORTHO05D007293 2.5e-73 280.0 183 69.9
Os11g0549650 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 3.7e-72 276.2 217 59.0
Zm00001eb201720 Zea mays HOM05D005903 ORTHO05D007293 4.5e-70 269.2 211 59.2
Mapoly0019s0171 Marchantia polymorpha HOM05D005903 ORTHO05D007293 1.7e-69 267.3 332 46.1
SMO367G0859 Selaginella moellendorffii HOM05D005903 ORTHO05D007293 1.7e-69 267.3 346 41.3
AagrBONN_evm.TU.Sc2ySwM_344.2832 Anthoceros agrestis HOM05D005903 ORTHO05D007293 3.2e-68 263.1 325 46.2
Pp3c7_4190 Physcomitrium patens HOM05D005903 ORTHO05D007293 4.2e-68 262.7 335 43.0
Oeu056062.1 Olea europaea HOM05D005903 ORTHO05D007293 2.6e-62 243.4 165 66.1
unitig_46.g18341 Utricularia gibba HOM05D005903 ORTHO05D007293 4.2e-60 236.1 330 41.8
Gohir.D11G050975 Gossypium hirsutum HOM05D005903 ORTHO05D007293 4.5e-54 216.1 170 62.9
Sc04g0004120 Simmondsia chinensis HOM05D005903 ORTHO05D007293 4.4e-49 199.5 123 68.3
Os11g0549690 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 4.8e-48 196.1 153 59.5
Sc04g0004130 Simmondsia chinensis HOM05D005903 ORTHO05D007293 1.7e-45 187.6 167 58.1
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 2.6e-41 173.7 189 44.4
Haze_05249 Corylus avellana HOM05D005903 ORTHO05D007293 2.4e-39 167.2 205 49.3
Cfa024540 Carpinus fangiana HOM05D005903 ORTHO05D007293 5.3e-39 166.0 317 36.9
MCO11G061 Micromonas commoda HOM05D005903 ORTHO05D007293 5.3e-39 166.0 350 33.7
Cre10.g436900 Chlamydomonas reinhardtii HOM05D005903 ORTHO05D007293 9.1e-39 165.2 317 35.0
Lalb_Chr07g0188221 Lupinus albus HOM05D005903 ORTHO05D007293 1.3e-32 144.8 145 50.3
Migut.O00470 Erythranthe guttata HOM05D005903 ORTHO05D007293 7.2e-28 129.0 144 48.6
PRCOL_00001260 Prasinoderma coloniale HOM05D005903 ORTHO05D007293 1.8e-26 124.4 355 29.0
CARHR106840 Cardamine hirsuta HOM05D005903 ORTHO05D007293 2.6e-25 120.6 122 53.3
Glyma.08G193350 Glycine max HOM05D005903 ORTHO05D007293 8.3e-16 89.0 60 71.7
COL.COLO4_05792 Corchorus olitorius HOM05D005903 ORTHO05D007293 1.0e-13 82.0 78 55.1
Os05g0295700 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 1.9e-12 77.8 65 49.2
CAN.G508.15 Capsicum annuum HOM05D005903 ORTHO05D007293 3.6e-11 73.6 247 25.1
SHI32711 Sapria himalayana HOM05D005903 ORTHO05D007293 1.0e-10 72.0 67 50.7
CBR_g8146 Chara braunii HOM05D005903 ORTHO05D000048 5.2e-10 69.7 66 50.0
Oeu056063.2 Olea europaea HOM05D007234 ORTHO05D008488 9.8e-09 65.5 67 52.2
Cfa001138 Carpinus fangiana HOM05D000398 ORTHO05D000551 1.9e-07 61.2 67 49.3
SHI32710 Sapria himalayana HOM05D005903 ORTHO05D007293 2.4e-07 60.8 86 44.2


User provided reference genes

Program Settings