Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C007007.2 Cucumis melo HOM05D007837 ORTHO05D009965 1.2e-299 1032.3 507 100.0
CsaV3_6G053020 Cucumis sativus L. HOM05D007837 ORTHO05D009965 7.0e-239 830.5 430 95.6
ClCG01G025810 Citrullus lanatus HOM05D007837 ORTHO05D009965 5.1e-221 771.2 428 89.7
Sed0012016 Sechium edule HOM05D007837 ORTHO05D009965 5.9e-177 624.8 449 74.6
TWI15G0587 Tripterygium wilfordii HOM05D007837 ORTHO05D009965 4.6e-137 492.3 436 58.5
Actinidia33640 Actinidia chinensis HOM05D007837 ORTHO05D009965 5.6e-135 485.3 443 57.6
CSS0012057 Camellia sinensis var. sinensis HOM05D007837 ORTHO05D009965 8.0e-134 481.5 440 58.0
Atru.chr10.652 Acer truncatum HOM05D007837 ORTHO05D009965 3.1e-133 479.6 432 56.9
Manes.16G061400 Manihot esculenta HOM05D007837 ORTHO05D009965 6.8e-133 478.4 454 56.2
Potri.011G153800 Populus trichocarpa HOM05D007837 ORTHO05D009965 8.9e-133 478.0 444 55.4
Lj1A1155T50 Lonicera japonica HOM05D007837 ORTHO05D009965 3.4e-132 476.1 435 58.6
Thecc.06G015600 Theobroma cacao HOM05D007837 ORTHO05D009965 8.3e-131 471.5 398 60.8
Duzib160G0902 Durio zibethinus HOM05D007837 ORTHO05D009965 7.8e-129 464.9 464 54.5
Prupe.4G103700 Prunus persica HOM05D007837 ORTHO05D009965 5.0e-128 462.2 435 57.7
Dinv06743 Davidia involucrata HOM05D007837 ORTHO05D009965 6.6e-128 461.8 401 60.3
Gohir.A05G113000 Gossypium hirsutum HOM05D007837 ORTHO05D009965 6.2e-126 455.3 436 55.5
TAR626G0822 Trochodendron aralioides HOM05D007837 ORTHO05D009965 6.2e-126 455.3 451 53.7
Gorai.009G117500 Gossypium raimondii HOM05D007837 ORTHO05D009965 8.1e-126 454.9 435 56.1
Gohir.D05G113500 Gossypium hirsutum HOM05D007837 ORTHO05D009965 6.8e-125 451.8 435 55.9
Dinv15942 Davidia involucrata HOM05D007837 ORTHO05D009965 7.5e-124 448.4 414 58.5
COL.COLO4_22875 Corchorus olitorius HOM05D007837 ORTHO05D009965 1.3e-123 447.6 437 54.9
Oeu008970.1 Olea europaea HOM05D007837 ORTHO05D009965 1.1e-122 444.5 436 53.9
FvH4_3g11620 Fragaria vesca HOM05D007837 ORTHO05D009965 5.4e-122 442.2 459 52.3
MD10G1240200 Malus domestica HOM05D007837 ORTHO05D009965 5.4e-122 442.2 434 55.1
DCAR_001340 Daucus carota HOM05D007837 ORTHO05D009965 9.2e-122 441.4 437 52.9
MD05G1261900 Malus domestica HOM05D007837 ORTHO05D009965 7.8e-121 438.3 438 54.1
FAN25G3065 Fragaria x ananassa HOM05D007837 ORTHO05D009965 3.9e-120 436.0 382 58.9
FAN21G3089 Fragaria x ananassa HOM05D007837 ORTHO05D009965 3.3e-119 433.0 475 50.5
PGR042G0413 Punica granatum HOM05D007837 ORTHO05D009965 9.5e-119 431.4 437 51.0
Cpa.g.sc192.12 Carica papaya HOM05D007837 ORTHO05D009965 1.2e-118 431.0 444 51.8
RcHm_v2.0_Chr5g0018641 Rosa chinensis HOM05D007837 ORTHO05D009965 1.2e-118 431.0 455 52.5
CANSAT35G1648 Cannabis sativa HOM05D007837 ORTHO05D009965 1.8e-117 427.2 432 52.1
Ciclev10017939m.g Citrus clementina HOM05D007837 ORTHO05D009965 5.8e-116 422.2 290 69.3
QL05p065337 Quercus lobata HOM05D007837 ORTHO05D009965 1.3e-115 421.0 484 50.0
SalBow8G2294 Salvia bowleyana HOM05D007837 ORTHO05D009965 1.4e-114 417.5 435 49.9
SalBow8G2521 Salvia bowleyana HOM05D007837 ORTHO05D009965 1.4e-114 417.5 435 49.9
Lj3g0012849 Lotus japonicus HOM05D007837 ORTHO05D009965 2.4e-114 416.8 348 58.9
Glyma.12G002600 Glycine max HOM05D007837 ORTHO05D009965 1.3e-112 411.0 433 50.6
FAN16G2143 Fragaria x ananassa HOM05D007837 ORTHO05D009965 1.1e-111 407.9 490 48.2
Migut.M01930 Erythranthe guttata HOM05D007837 ORTHO05D009965 4.3e-111 406.0 429 51.7
Cc09_g07320 Coffea canephora HOM05D007837 ORTHO05D009965 1.8e-109 400.6 334 59.3
PSO675G4978 Papaver somniferum HOM05D007837 ORTHO05D009965 8.9e-109 398.3 432 50.7
Sopen02g018680 Solanum pennellii HOM05D007837 ORTHO05D009965 6.4e-107 392.1 435 49.9
PSO541G2349 Papaver somniferum HOM05D007837 ORTHO05D009965 1.9e-106 390.6 353 58.4
Solyc02g069550.1 Solanum lycopersicum HOM05D007837 ORTHO05D009965 1.3e-104 384.4 422 50.2
Aqoxy3G03542 Aquilegia oxysepala HOM05D007837 ORTHO05D009965 3.0e-104 383.3 301 62.1
Nitab4.5_0001219g0090 Nicotiana tabacum HOM05D007837 ORTHO05D009965 7.3e-103 378.6 435 49.4
Nitab4.5_0011721g0030 Nicotiana tabacum HOM05D007837 ORTHO05D009965 1.3e-102 377.9 463 46.7
VMungo1127G0844 Vigna mungo HOM05D007837 ORTHO05D009965 2.1e-102 377.1 352 54.0
Phvul.011G003300 Phaseolus vulgaris HOM05D007837 ORTHO05D009965 1.3e-99 367.9 349 54.4
MBI18_g28215_MAGBIO Magnolia biondii HOM05D007837 ORTHO05D009965 6.4e-99 365.5 444 45.7
Peaxi162Scf00195g00413 Petunia axillaris HOM05D007837 ORTHO05D009965 2.1e-97 360.5 436 47.7
Potri.001G443025 Populus trichocarpa HOM05D007837 ORTHO05D009965 4.6e-97 359.4 251 68.1
Lsat_1_v5_gn_1_90680 Lactuca sativa HOM05D007837 ORTHO05D001664 5.3e-93 345.9 413 50.4
Psat7g145400 Pisum sativum HOM05D007837 ORTHO05D009965 1.2e-92 344.7 249 65.5
ATR1098G128 Amborella trichopoda HOM05D007837 ORTHO05D009965 1.5e-92 344.4 282 58.5
Medtr4g035250 Medicago truncatula HOM05D007837 ORTHO05D009965 2.0e-92 344.0 429 44.5
GSVIVG01037969001 Vitis vinifera HOM05D007837 ORTHO05D009965 1.8e-80 304.3 219 68.9
arahy.Tifrunner.gnm1.ann1.FUT705 Arachis hypogaea HOM05D007837 ORTHO05D009965 1.3e-78 298.1 216 65.7
arahy.Tifrunner.gnm1.ann1.SA9RL2 Arachis hypogaea HOM05D007837 ORTHO05D009965 4.8e-78 296.2 290 53.4
SEGI_16109 Sequoiadendron giganteum HOM05D007837 ORTHO05D009965 4.1e-69 266.5 278 50.0
AagrBONN_evm.TU.Sc2ySwM_228.3840 Anthoceros agrestis HOM05D007837 ORTHO05D009965 3.7e-54 216.9 365 37.8
SMO118G0556 Selaginella moellendorffii HOM05D007837 ORTHO05D009965 5.9e-52 209.5 392 32.7
Haze_05985 Corylus avellana HOM05D007837 ORTHO05D009965 1.7e-43 181.4 129 69.0
TAR633G0058 Trochodendron aralioides HOM05D007837 ORTHO05D009965 5.5e-42 176.4 199 46.7
TPR.G10794 Trifolium pratense HOM05D007837 ORTHO05D009965 3.6e-41 173.7 190 46.3
Hma1.2p1_0410F.1_g147010 Hydrangea macrophylla HOM05D007837 ORTHO05D009965 3.7e-38 163.7 105 75.2
Sabra11G0145700 Salix brachista HOM05D007837 ORTHO05D009965 2.1e-33 147.9 115 61.7
TAR086G0001 Trochodendron aralioides HOM05D007837 ORTHO05D009965 9.8e-23 112.5 67 79.1
Pp3c26_6480 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.5e-18 98.6 241 29.5
Pp3c26_6484 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.5e-18 98.6 241 29.5
Pp3c10_12340 Physcomitrium patens HOM05D007670 ORTHO05D009646 4.3e-18 97.1 239 29.7
Sabra11G0145800 Salix brachista HOM05D007837 ORTHO05D009965 4.3e-18 97.1 174 36.8
TAR365G1222 Trochodendron aralioides HOM05D001154 ORTHO05D010892 2.3e-16 91.3 64 65.6
TAR626G1098 Trochodendron aralioides HOM05D001154 ORTHO05D010892 5.2e-16 90.1 64 65.6
Pp3c11_2120 Physcomitrium patens HOM05D007670 ORTHO05D009646 1.2e-15 89.0 234 30.3
Hma1.2p1_0410F.1_g147000 Hydrangea macrophylla HOM05D007837 ORTHO05D009965 4.4e-15 87.0 74 55.4
TPR.G1949 Trifolium pratense HOM05D007837 ORTHO05D009965 9.8e-15 85.9 53 67.9
Pp3c18_13530 Physcomitrium patens HOM05D007670 ORTHO05D009646 6.4e-14 83.2 238 27.7
SEGI_28887 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 1.4e-13 82.0 226 27.0
Pp3c7_23860 Physcomitrium patens HOM05D007670 ORTHO05D009646 3.2e-13 80.9 247 25.9
Ciclev10024352m.g Citrus clementina HOM05D007670 ORTHO05D009646 1.2e-12 79.0 234 27.4
Zm00001eb388830 Zea mays HOM05D007670 ORTHO05D009646 1.2e-12 79.0 268 24.6
TAR362G0005 Trochodendron aralioides HOM05D007837 ORTHO05D009965 2.7e-12 77.8 76 50.0
HPP92_001311 Vanilla planifolia HOM05D007670 ORTHO05D009646 1.3e-11 75.5 219 26.5
Medtr4g104750 Medicago truncatula HOM05D007670 ORTHO05D009646 1.7e-11 75.1 232 26.3
ClCG03G003050 Citrullus lanatus HOM05D007670 ORTHO05D009646 2.3e-11 74.7 232 26.7
Ca_19420_v3 Cicer arietinum L. HOM05D007670 ORTHO05D009646 3.0e-11 74.3 235 25.5
PSO478G3950 Papaver somniferum HOM05D007670 ORTHO05D009646 3.9e-11 73.9 234 27.4
Psat4g061560 Pisum sativum HOM05D007670 ORTHO05D009646 3.9e-11 73.9 232 25.4
Sopen03g031210 Solanum pennellii HOM05D007670 ORTHO05D009646 5.0e-11 73.6 245 25.7
Pp3c21_7410 Physcomitrium patens HOM05D007670 ORTHO05D009646 8.6e-11 72.8 319 22.9
ATR0824G010 Amborella trichopoda HOM05D007670 ORTHO05D009646 1.1e-10 72.4 237 27.8
TPR.G37476 Trifolium pratense HOM05D007670 ORTHO05D009646 1.1e-10 72.4 245 25.7
Nitab4.5_0008913g0020 Nicotiana tabacum HOM05D007670 ORTHO05D009646 1.5e-10 72.0 234 24.4
COL.COLO4_33501 Corchorus olitorius HOM05D007670 ORTHO05D009646 3.3e-10 70.9 222 24.8
Cfa019228 Carpinus fangiana HOM05D007670 ORTHO05D009646 5.6e-10 70.1 217 24.0
TWI39G0169 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 5.6e-10 70.1 244 24.2
Aqoxy3G01244 Aquilegia oxysepala HOM05D007670 ORTHO05D009646 7.3e-10 69.7 244 25.0
Gohir.A03G074800 Gossypium hirsutum HOM05D007670 ORTHO05D009646 7.3e-10 69.7 258 25.6
Prupe.5G164600 Prunus persica HOM05D007670 ORTHO05D009646 7.3e-10 69.7 238 25.2
arahy.Tifrunner.gnm1.ann1.2S9CTF Arachis hypogaea HOM05D007670 ORTHO05D009646 9.5e-10 69.3 239 24.7
VMungo1215G0346 Vigna mungo HOM05D007670 ORTHO05D009646 1.6e-09 68.6 215 25.1
CiPaw.12G031800 Carya illinoinensis HOM05D007670 ORTHO05D009646 2.8e-09 67.8 211 26.1
Phvul.003G205800 Phaseolus vulgaris HOM05D007670 ORTHO05D009646 2.8e-09 67.8 215 25.1
PGSC0003DMG400018192 Solanum tuberosum HOM05D007670 ORTHO05D009646 3.6e-09 67.4 244 25.0
arahy.Tifrunner.gnm1.ann1.4HF9FM Arachis hypogaea HOM05D007670 ORTHO05D009646 4.7e-09 67.0 239 23.8
FAN08G1903 Fragaria x ananassa HOM05D007670 ORTHO05D009646 4.7e-09 67.0 243 23.9
Glyma.05G042100 Glycine max HOM05D007670 ORTHO05D009646 4.7e-09 67.0 233 24.9
TAR371G0483 Trochodendron aralioides HOM05D001154 ORTHO05D010892 4.7e-09 67.0 39 71.8
PGR044G2723 Punica granatum HOM05D007670 ORTHO05D009646 6.2e-09 66.6 235 26.4
TWI23G1319 Tripterygium wilfordii HOM05D007670 ORTHO05D009646 6.2e-09 66.6 232 24.6
Atru.chr9.2593 Acer truncatum HOM05D007670 ORTHO05D009646 8.1e-09 66.2 223 25.6
HPP92_003438 Vanilla planifolia HOM05D001493 ORTHO05D001681 1.4e-08 65.5 226 25.7
Manes.06G111300 Manihot esculenta HOM05D007670 ORTHO05D009646 1.8e-08 65.1 237 24.9
CANSAT80G0945 Cannabis sativa HOM05D007670 ORTHO05D009646 2.3e-08 64.7 232 26.3
Cc04_g11380 Coffea canephora HOM05D007670 ORTHO05D009646 2.3e-08 64.7 251 23.5
Eucgr.K02784 Eucalyptus grandis HOM05D007670 ORTHO05D009646 3.1e-08 64.3 220 23.6
FvH4_5g06391 Fragaria vesca HOM05D007670 ORTHO05D009646 3.1e-08 64.3 244 23.0
Nitab4.5_0002522g0060 Nicotiana tabacum HOM05D007670 ORTHO05D009646 3.1e-08 64.3 248 24.2
Sed0003800 Sechium edule HOM05D007670 ORTHO05D009646 3.1e-08 64.3 232 23.7
SEGI_38678 Sequoiadendron giganteum HOM05D007670 ORTHO05D009646 4.0e-08 63.9 142 32.4
ECA246G3610 Erigeron canadensis HOM05D007670 ORTHO05D009646 5.2e-08 63.5 245 23.7
FAN13G0035 Fragaria x ananassa HOM05D007670 ORTHO05D009646 5.2e-08 63.5 237 22.8
FAN18G1020 Fragaria x ananassa HOM05D007670 ORTHO05D009646 5.2e-08 63.5 244 23.0
SMO263G0007 Selaginella moellendorffii HOM05D007837 ORTHO05D009965 6.8e-08 63.2 166 27.7
MELO3C002304.2 Cucumis melo HOM05D007670 ORTHO05D009646 8.9e-08 62.8 196 26.5
Actinidia08035 Actinidia chinensis HOM05D007670 ORTHO05D009646 2.0e-07 61.6 271 24.4
FAN04G2873 Fragaria x ananassa HOM05D007670 ORTHO05D009646 2.0e-07 61.6 244 22.5
Lj5C130G15 Lonicera japonica HOM05D007670 ORTHO05D009646 2.0e-07 61.6 233 24.5
Lj4g0014046 Lotus japonicus HOM05D007670 ORTHO05D009646 2.0e-07 61.6 238 24.4
Thecc.03G116000 Theobroma cacao HOM05D007670 ORTHO05D009646 2.6e-07 61.2 234 23.9
Migut.O00167 Erythranthe guttata HOM05D007670 ORTHO05D009646 3.4e-07 60.8 201 25.4
MD14G1170500 Malus domestica HOM05D007670 ORTHO05D009646 3.4e-07 60.8 174 24.7
Lsat_1_v5_gn_5_13921 Lactuca sativa HOM05D007670 ORTHO05D009646 5.8e-07 60.1 237 24.1
GSVIVG01007632001 Vitis vinifera HOM05D007670 ORTHO05D009646 7.5e-07 59.7 225 24.0
Gohir.D03G101500 Gossypium hirsutum HOM05D007670 ORTHO05D009646 2.9e-06 57.8 165 26.1
Peaxi162Scf00089g01230 Petunia axillaris HOM05D007670 ORTHO05D009646 2.9e-06 57.8 198 25.8
DCAR_007451 Daucus carota HOM05D007670 ORTHO05D009646 6.4e-06 56.6 241 22.0
Hma1.2p1_1092F.1_g255930 Hydrangea macrophylla HOM05D007670 ORTHO05D009646 8.3e-06 56.2 248 23.8
RcHm_v2.0_Chr7g0192411 Rosa chinensis HOM05D007670 ORTHO05D009646 8.3e-06 56.2 289 22.8
TAR629G1516 Trochodendron aralioides HOM05D007670 ORTHO05D009646 8.3e-06 56.2 209 23.4


User provided reference genes

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