Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006963.2 Cucumis melo HOM05D005766 ORTHO05D007002 0.0e+00 1278.5 637 100.0
CsaV3_3G021770 Cucumis sativus L. HOM05D005766 ORTHO05D007002 0.0e+00 1199.9 642 94.7
ClCG05G008560 Citrullus lanatus HOM05D005766 ORTHO05D007002 5.2e-311 1070.5 642 86.4
Sed0015140 Sechium edule HOM05D005766 ORTHO05D007002 1.2e-307 1059.3 600 89.2
Cfa016332 Carpinus fangiana HOM05D005766 ORTHO05D007002 1.4e-268 929.5 669 71.6
Prupe.2G304700 Prunus persica HOM05D005766 ORTHO05D007002 1.2e-267 926.4 659 71.8
MD07G1282600 Malus domestica HOM05D005766 ORTHO05D007002 6.3e-261 904.0 705 67.0
TAR629G2087 Trochodendron aralioides HOM05D005766 ORTHO05D007002 8.2e-261 903.7 673 69.1
CANSAT21G0601 Cannabis sativa HOM05D005766 ORTHO05D007002 1.1e-260 903.3 656 70.6
GSVIVG01028775001 Vitis vinifera HOM05D005766 ORTHO05D007002 1.1e-260 903.3 669 69.5
Potri.015G026100 Populus trichocarpa HOM05D005766 ORTHO05D007002 1.2e-256 889.8 656 68.4
PSO170G0163 Papaver somniferum HOM05D005766 ORTHO05D007002 1.4e-255 886.3 656 66.8
Duzib205G0439 Durio zibethinus HOM05D005766 ORTHO05D007002 1.5e-254 882.9 652 68.7
Nn1g01746 Nelumbo nucifera HOM05D005766 ORTHO05D007002 2.0e-254 882.5 676 67.3
Hma1.2p1_0327F.1_g126600 Hydrangea macrophylla HOM05D005766 ORTHO05D007002 9.7e-254 880.2 640 69.4
Rhsim03G0196600 Rhododendron simsii HOM05D005766 ORTHO05D007002 3.7e-253 878.2 690 66.8
Glyma.10G228700 Glycine max HOM05D005766 ORTHO05D007002 7.7e-251 870.5 648 67.9
Gohir.A12G254600 Gossypium hirsutum HOM05D005766 ORTHO05D007002 7.7e-251 870.5 651 68.7
Thecc.03G188900 Theobroma cacao HOM05D005766 ORTHO05D007002 8.5e-250 867.1 651 67.6
Gorai.008G272400 Gossypium raimondii HOM05D005766 ORTHO05D007002 1.9e-249 865.9 651 68.2
Gohir.D12G254700 Gossypium hirsutum HOM05D005766 ORTHO05D007002 2.5e-249 865.5 651 68.0
Phvul.007G077400 Phaseolus vulgaris HOM05D005766 ORTHO05D007002 9.4e-249 863.6 651 68.4
Cc02_g02130 Coffea canephora HOM05D005766 ORTHO05D007002 2.7e-248 862.1 649 68.4
Glyma.20G164300 Glycine max HOM05D005766 ORTHO05D007002 3.6e-248 861.7 648 67.7
PGR004G1861 Punica granatum HOM05D005766 ORTHO05D007002 6.8e-247 857.4 653 67.1
Manes.14G020100 Manihot esculenta HOM05D005766 ORTHO05D007002 2.2e-245 852.4 630 69.5
Lj5g0016487 Lotus japonicus HOM05D005766 ORTHO05D007002 7.0e-244 847.4 635 68.2
FvH4_7g30700 Fragaria vesca HOM05D005766 ORTHO05D007002 3.8e-242 841.6 618 70.7
TPR.G7746 Trifolium pratense HOM05D005766 ORTHO05D007002 2.1e-240 835.9 659 65.9
Aqoxy5G04049 Aquilegia oxysepala HOM05D005766 ORTHO05D007002 3.0e-239 832.0 666 63.8
Eucgr.K00307 Eucalyptus grandis HOM05D005766 ORTHO05D007002 1.3e-237 826.6 656 64.8
Lsat_1_v5_gn_2_61121 Lactuca sativa HOM05D005766 ORTHO05D007002 1.1e-233 813.5 650 64.2
MD01G1212200 Malus domestica HOM05D005766 ORTHO05D007002 4.3e-233 811.6 634 66.7
vmacro06594 Vaccinium macrocarpon HOM05D005766 ORTHO05D007002 9.5e-233 810.4 742 59.8
Migut.F00259 Erythranthe guttata HOM05D005766 ORTHO05D007002 4.0e-231 805.1 643 63.5
Ah.07g206240 Amaranthus hybridus HOM05D005766 ORTHO05D007002 9.2e-228 793.9 686 59.9
ATR1131G022 Amborella trichopoda HOM05D005766 ORTHO05D007002 9.2e-228 793.9 673 60.9
Ca_10701_v3 Cicer arietinum L. HOM05D005766 ORTHO05D007002 6.8e-223 777.7 645 62.9
Haze_00083 Corylus avellana HOM05D005766 ORTHO05D007002 1.1e-220 770.4 774 56.5
Lj1A1010T47 Lonicera japonica HOM05D005766 ORTHO05D007002 1.6e-216 756.5 662 60.9
arahy.Tifrunner.gnm1.ann1.8957SA Arachis hypogaea HOM05D005766 ORTHO05D007002 4.0e-215 751.9 662 60.3
arahy.Tifrunner.gnm1.ann1.M1FPNI Arachis hypogaea HOM05D005766 ORTHO05D007002 1.2e-214 750.4 622 63.7
MBI07_g26934_MAGBIO Magnolia biondii HOM05D005766 ORTHO05D007002 5.8e-214 748.0 683 59.9
CiPaw.05G259700 Carya illinoinensis HOM05D005766 ORTHO05D007002 6.0e-211 738.0 545 69.5
Sabra15G0019200 Salix brachista HOM05D005766 ORTHO05D007002 8.6e-210 734.2 678 58.4
SalBow4G0986 Salvia bowleyana HOM05D005766 ORTHO05D007002 1.1e-204 717.2 636 59.4
FAN06G2288 Fragaria x ananassa HOM05D005766 ORTHO05D007002 2.4e-204 716.1 662 60.0
ECA238G0894 Erigeron canadensis HOM05D005766 ORTHO05D000105 3.2e-204 715.7 547 66.9
FAN10G0167 Fragaria x ananassa HOM05D005766 ORTHO05D007002 7.1e-204 714.5 684 58.2
FAN10G3945 Fragaria x ananassa HOM05D005766 ORTHO05D007002 9.2e-204 714.1 684 58.0
Dinv28359 Davidia involucrata HOM05D005766 ORTHO05D007002 1.6e-195 686.8 553 64.4
TWI39G0494 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 2.1e-195 686.4 660 56.7
FAN03G2278 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.3e-192 677.2 709 54.0
Hund04814 Selenicereus undatus HOM05D005766 ORTHO05D007002 4.0e-191 672.2 653 56.2
CSS0041625 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 2.7e-187 659.4 528 65.3
CSS0024367 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 8.7e-186 654.4 529 65.2
RcHm_v2.0_Chr1g0379661 Rosa chinensis HOM05D005766 ORTHO05D007002 5.6e-185 651.7 488 72.5
SGA_v2.0_scaffold192G40599 Striga asiatica HOM05D005766 ORTHO05D007002 5.6e-185 651.7 536 62.7
Mapoly0113s0021 Marchantia polymorpha HOM05D005766 ORTHO05D007002 2.1e-184 649.8 656 50.8
Cpa.g.sc3.14 Carica papaya HOM05D005766 ORTHO05D007002 1.7e-181 640.2 699 54.1
Lalb_Chr06g0161411 Lupinus albus HOM05D005766 ORTHO05D007002 9.0e-175 617.8 490 66.1
Medtr1g099380 Medicago truncatula HOM05D005766 ORTHO05D007002 1.1e-164 584.3 451 68.7
HPP92_022503 Vanilla planifolia HOM05D005766 ORTHO05D007002 7.2e-164 581.6 495 63.4
Peaxi162Scf00023g00720 Petunia axillaris HOM05D005766 ORTHO05D007002 2.1e-163 580.1 538 59.7
Sc13g0009380 Simmondsia chinensis HOM05D005766 ORTHO05D007002 3.0e-162 576.2 482 64.1
Ciclev10004767m.g Citrus clementina HOM05D005766 ORTHO05D007002 1.1e-161 574.3 509 61.5
HanXRQChr14g0440231 Helianthus annuus HOM05D005766 ORTHO05D007002 2.0e-161 573.5 342 80.4
Sopen12g011340 Solanum pennellii HOM05D005766 ORTHO05D007002 3.3e-161 572.8 462 64.3
Psat6g194920 Pisum sativum HOM05D005766 ORTHO05D007002 6.9e-159 565.1 416 69.5
QL11p056564 Quercus lobata HOM05D005766 ORTHO05D007002 3.4e-158 562.8 422 69.0
Oeu003335.2 Olea europaea HOM05D005766 ORTHO05D007002 5.0e-157 558.9 462 63.6
FAN06G1885 Fragaria x ananassa HOM05D005766 ORTHO05D007002 6.1e-155 552.0 464 64.2
EL10Ac3g05375 Beta vulgaris HOM05D005766 ORTHO05D007002 3.0e-154 549.7 454 65.0
Atru.chr1.315 Acer truncatum HOM05D005766 ORTHO05D007002 2.0e-153 547.0 428 67.3
FAN01G0765 Fragaria x ananassa HOM05D005766 ORTHO05D007002 1.3e-152 544.3 464 63.8
Sabra15G0021700 Salix brachista HOM05D005766 ORTHO05D007002 3.1e-143 513.1 538 53.5
AagrBONN_evm.TU.Sc2ySwM_344.4899 Anthoceros agrestis HOM05D005766 ORTHO05D007002 1.8e-135 487.3 660 43.3
unitig_37.g11976 Utricularia gibba HOM05D005766 ORTHO05D007002 3.2e-132 476.5 641 43.7
CDE02G1402 Ceratophyllum demersum HOM05D001977 ORTHO05D002246 7.2e-132 475.3 291 77.3
SEGI_39054 Sequoiadendron giganteum HOM05D005766 ORTHO05D007002 1.4e-127 461.1 440 57.3
SMO203G0206 Selaginella moellendorffii HOM05D005766 ORTHO05D007002 2.4e-127 460.3 633 41.4
Glyma.09G181880 Glycine max HOM05D005766 ORTHO05D007002 2.2e-112 410.6 247 80.2
Nitab4.5_0014657g0010 Nicotiana tabacum HOM05D005766 ORTHO05D007002 1.9e-95 354.4 261 68.2
QL09p011984 Quercus lobata HOM05D005766 ORTHO05D007002 6.4e-80 302.8 291 58.4
Nitab4.5_0000157g0190 Nicotiana tabacum HOM05D005766 ORTHO05D007002 1.2e-73 282.0 273 60.1
Atru.chr1.316 Acer truncatum HOM05D005766 ORTHO05D007002 8.4e-72 275.8 173 74.6
CBR_g23333 Chara braunii HOM05D005766 ORTHO05D007002 8.4e-72 275.8 342 45.3
Actinidia08607 Actinidia chinensis HOM05D005766 ORTHO05D007002 2.4e-71 274.2 157 84.7
TWI39G0059 Tripterygium wilfordii HOM05D005766 ORTHO05D007002 7.1e-71 272.7 168 76.8
RcHm_v2.0_Chr1g0379651 Rosa chinensis HOM05D005766 ORTHO05D007002 2.1e-70 271.2 173 72.3
QL11p056568 Quercus lobata HOM05D005766 ORTHO05D007002 4.6e-70 270.0 173 71.1
Zm00001eb221900 Zea mays HOM05D005766 ORTHO05D007002 3.1e-66 257.3 316 45.9
Psat6g194960 Pisum sativum HOM05D000038 ORTHO05D007763 5.3e-66 256.5 184 65.2
DCAR_008901 Daucus carota HOM05D000149 ORTHO05D000076 4.9e-64 250.0 589 31.9
Lalb_Chr06g0161401 Lupinus albus HOM05D005766 ORTHO05D007002 1.9e-60 238.0 173 63.0
Sc13g0009390 Simmondsia chinensis HOM05D005766 ORTHO05D007002 1.9e-60 238.0 179 62.6
Medtr1g099390 Medicago truncatula HOM05D005766 ORTHO05D007002 4.8e-59 233.4 175 64.0
HanXRQChr14g0440221 Helianthus annuus HOM05D005766 ORTHO05D007002 8.2e-59 232.6 169 62.7
PGSC0003DMG400006615 Solanum tuberosum HOM05D005766 ORTHO05D007002 1.2e-57 228.8 173 61.3
Solyc12g021310.3 Solanum lycopersicum HOM05D005766 ORTHO05D007002 1.5e-57 228.4 173 60.7
Nitab4.5_0001504g0110 Nicotiana tabacum HOM05D005766 ORTHO05D007002 2.6e-57 227.6 178 61.8
Sopen12g011330 Solanum pennellii HOM05D005766 ORTHO05D007002 4.5e-57 226.9 173 59.5
Glyma.12G172150 Glycine max HOM05D005766 ORTHO05D007002 3.5e-54 217.2 131 80.2
Actinidia08606 Actinidia chinensis HOM05D005766 ORTHO05D007002 3.4e-49 200.7 222 52.3
Glyma.03G072901 Glycine max HOM05D005766 ORTHO05D007002 1.3e-48 198.7 118 79.7
Glyma.18G131400 Glycine max HOM05D005766 ORTHO05D007002 6.5e-48 196.4 173 57.2
AUR62021076 Chenopodium quinoa HOM05D005766 ORTHO05D007002 5.5e-47 193.4 173 60.7
AUR62031455 Chenopodium quinoa HOM05D000038 ORTHO05D007763 9.4e-47 192.6 150 66.7
Glyma.16G148650 Glycine max HOM05D005766 ORTHO05D007002 3.6e-46 190.7 105 81.9
Glyma.10G228301 Glycine max HOM05D005766 ORTHO05D007002 6.7e-45 186.4 100 84.0
Os05g0299300 Oryza sativa ssp. japonica HOM05D005766 ORTHO05D007002 3.3e-44 184.1 130 66.9
QL09p011987 Quercus lobata HOM05D005766 ORTHO05D007002 4.3e-44 183.7 173 53.2
CAN.G71.5 Capsicum annuum HOM05D005766 ORTHO05D007002 1.2e-41 175.6 138 63.0
PRCOL_00006853 Prasinoderma coloniale HOM05D005766 ORTHO05D007002 5.9e-41 173.3 877 24.9
QL09p011981 Quercus lobata HOM05D005766 ORTHO05D007002 1.1e-39 169.1 100 81.0
Duzib084G0599 Durio zibethinus HOM05D005766 ORTHO05D007002 8.2e-35 152.9 113 70.8
Nitab4.5_0000327g0060 Nicotiana tabacum HOM05D005766 ORTHO05D007002 3.1e-34 151.0 93 78.5
arahy.Tifrunner.gnm1.ann1.DV56VC Arachis hypogaea HOM05D005766 ORTHO05D007002 2.6e-33 147.9 129 52.7
COL.COLO4_30253 Corchorus olitorius HOM05D005766 ORTHO05D007002 5.7e-28 130.2 194 45.4
CSS0010184 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 1.4e-26 125.6 78 76.9
Actinidia08608 Actinidia chinensis HOM05D005766 ORTHO05D007002 7.0e-26 123.2 74 77.0
Cre01.g002700 Chlamydomonas reinhardtii HOM05D005766 ORTHO05D007002 1.6e-25 122.1 198 31.8
CSS0002634 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 1.7e-24 118.6 65 84.6
Cfa000854 Carpinus fangiana HOM05D005766 ORTHO05D007002 1.1e-23 115.9 77 72.7
arahy.Tifrunner.gnm1.ann1.XWQU4Z Arachis hypogaea HOM05D005766 ORTHO05D007002 2.6e-20 104.8 85 57.6
TPR.G27363 Trifolium pratense HOM05D005766 ORTHO05D007002 1.1e-15 89.4 57 63.2
arahy.Tifrunner.gnm1.ann1.118EZC Arachis hypogaea HOM05D005766 ORTHO05D007002 1.9e-15 88.6 56 71.4
Peaxi162Scf00603g00414 Petunia axillaris HOM05D007579 ORTHO05D000285 1.5e-12 79.0 60 65.0
arahy.Tifrunner.gnm1.ann1.AW6XP7 Arachis hypogaea HOM05D005766 ORTHO05D007002 1.4e-10 72.4 68 50.0
Lj1g0002370 Lotus japonicus HOM05D006183 ORTHO05D007844 2.0e-09 68.6 335 22.7
Glyma.08G028700 Glycine max HOM05D005766 ORTHO05D007002 4.5e-09 67.4 41 75.6
Oeu023563.1 Olea europaea HOM05D005766 ORTHO05D007002 7.7e-09 66.6 88 44.3
Gohir.D08G042200 Gossypium hirsutum HOM05D005813 ORTHO05D007310 1.0e-08 66.2 350 20.0
Oeu044897.1 Olea europaea HOM05D005766 ORTHO05D007002 2.9e-08 64.7 88 43.2
Oeu016993.1 Olea europaea HOM05D005766 ORTHO05D007002 3.8e-08 64.3 88 43.2
Thecc.01G376600 Theobroma cacao HOM05D005813 ORTHO05D007310 3.8e-08 64.3 350 20.0
Gohir.A08G031100 Gossypium hirsutum HOM05D005813 ORTHO05D007310 5.0e-08 63.9 350 20.0
Cpa.g.sc87.44 Carica papaya HOM05D006183 ORTHO05D007844 1.1e-07 62.8 341 22.3
GSVIVG01028442001 Vitis vinifera HOM05D006183 ORTHO05D007844 1.1e-07 62.8 335 21.8
arahy.Tifrunner.gnm1.ann1.3HS4ZY Arachis hypogaea HOM05D005766 ORTHO05D007002 1.5e-07 62.4 44 70.5
Atru.chr5.1959 Acer truncatum HOM05D006183 ORTHO05D007844 1.9e-07 62.0 335 22.1
Haze_24717 Corylus avellana HOM05D006183 ORTHO05D007844 1.9e-07 62.0 344 21.8
Duzib133G1169 Durio zibethinus HOM05D006183 ORTHO05D007844 2.5e-07 61.6 335 22.7
Thhalv10001927m.g Eutrema salsugineum HOM05D006183 ORTHO05D007844 2.5e-07 61.6 342 23.1
Oeu049881.1 Olea europaea HOM05D005766 ORTHO05D007002 3.3e-07 61.2 56 53.6
Solyc12g009030.2 Solanum lycopersicum HOM05D005151 ORTHO05D006322 3.3e-07 61.2 231 24.7
Aqoxy5G00112 Aquilegia oxysepala HOM05D006183 ORTHO05D007844 4.3e-07 60.8 353 21.8
arahy.Tifrunner.gnm1.ann1.DC2VU6 Arachis hypogaea HOM05D000702 ORTHO05D007002 9.5e-07 59.7 45 64.4
RcHm_v2.0_Chr4g0404071 Rosa chinensis HOM05D005766 ORTHO05D007002 9.5e-07 59.7 33 87.9
CSS0035081 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 1.2e-06 59.3 38 78.9
VMungo1383G1345 Vigna mungo HOM05D005813 ORTHO05D007310 1.2e-06 59.3 347 20.2
EL10Ac5g10958 Beta vulgaris HOM05D003913 ORTHO05D004803 1.6e-06 58.9 230 23.5
EL10Ac7g16227 Beta vulgaris HOM05D006479 ORTHO05D008310 2.1e-06 58.5 280 22.9
AUR62001606 Chenopodium quinoa HOM05D006479 ORTHO05D008310 3.6e-06 57.8 257 21.8
CSS0038194 Camellia sinensis var. sinensis HOM05D005766 ORTHO05D007002 4.7e-06 57.4 38 76.3
Dinv19261 Davidia involucrata HOM05D006183 ORTHO05D007844 6.1e-06 57.0 246 23.2
ECA248G2561 Erigeron canadensis HOM05D006183 ORTHO05D007844 6.1e-06 57.0 339 20.9
GSVIVG01035793001 Vitis vinifera HOM05D000836 ORTHO05D000709 6.1e-06 57.0 227 23.3
AUR62020174 Chenopodium quinoa HOM05D006479 ORTHO05D008310 8.0e-06 56.6 257 21.4
PRCOL_00007011 Prasinoderma coloniale HOM05D004669 ORTHO05D000387 8.0e-06 56.6 194 25.3


User provided reference genes

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