Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006949.2 Cucumis melo HOM05D004003 ORTHO05D004595 5.6e-92 340.9 169 100.0
CsaV3_3G017590 Cucumis sativus L. HOM05D004003 ORTHO05D004595 2.4e-90 335.5 169 97.6
ClCG05G008500 Citrullus lanatus HOM05D004003 ORTHO05D004595 3.4e-89 331.6 169 96.4
Sed0009881 Sechium edule HOM05D004003 ORTHO05D004595 5.1e-85 317.8 169 94.1
Sed0014667 Sechium edule HOM05D004003 ORTHO05D004595 1.9e-84 315.8 169 92.3
Eucgr.A02717 Eucalyptus grandis HOM05D004003 ORTHO05D004595 1.0e-77 293.5 166 87.3
COL.COLO4_30289 Corchorus olitorius HOM05D004003 ORTHO05D004595 1.4e-77 293.1 161 88.8
Manes.06G153700 Manihot esculenta HOM05D004003 ORTHO05D004595 2.3e-77 292.4 149 94.6
CiPaw.06G004300 Carya illinoinensis HOM05D004003 ORTHO05D004595 3.0e-77 292.0 168 86.3
A03p15550 Brassica napus HOM05D004003 ORTHO05D004595 5.1e-77 291.2 157 89.2
Thhalv10026409m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 5.1e-77 291.2 157 88.5
Gohir.D11G013100 Gossypium hirsutum HOM05D004003 ORTHO05D004595 5.1e-77 291.2 157 89.8
THA.LOC104800278 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 5.1e-77 291.2 150 93.3
Thecc.03G186200 Theobroma cacao HOM05D004003 ORTHO05D004595 6.7e-77 290.8 161 88.2
Ciclev10006072m.g Citrus clementina HOM05D004003 ORTHO05D004595 1.1e-76 290.0 169 84.0
Manes.14G021000 Manihot esculenta HOM05D004003 ORTHO05D004595 1.1e-76 290.0 149 92.6
THA.LOC104825117 Tarenaya hassleriana HOM05D004003 ORTHO05D004595 1.1e-76 290.0 169 84.6
BolC3t14217H Brassica oleracea HOM05D004003 ORTHO05D004595 1.5e-76 289.7 157 88.5
BraA03t10847Z Brassica rapa HOM05D004003 ORTHO05D004595 1.5e-76 289.7 157 88.5
Duzib084G0289 Durio zibethinus HOM05D004003 ORTHO05D004595 1.5e-76 289.7 157 88.5
BcaB01g04212 Brassica carinata HOM05D004003 ORTHO05D004595 2.5e-76 288.9 172 83.7
BcaC01g06202 Brassica carinata HOM05D004003 ORTHO05D004595 2.5e-76 288.9 157 88.5
C03p18160 Brassica napus HOM05D004003 ORTHO05D004595 2.5e-76 288.9 157 88.5
Thhalv10014849m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 2.5e-76 288.9 157 87.9
Gohir.A11G012800 Gossypium hirsutum HOM05D004003 ORTHO05D004595 3.3e-76 288.5 157 88.5
Sp7g25950 Schrenkiella parvula HOM05D004003 ORTHO05D004595 3.3e-76 288.5 157 87.9
A02p11580 Brassica napus HOM05D004003 ORTHO05D004595 4.3e-76 288.1 168 83.3
FAN10G2159 Fragaria x ananassa HOM05D004003 ORTHO05D004595 4.3e-76 288.1 155 89.0
TWI23G0858 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 4.3e-76 288.1 169 85.2
Duzib205G1856 Durio zibethinus HOM05D004003 ORTHO05D004595 7.4e-76 287.3 157 87.3
FvH4_7g30480 Fragaria vesca HOM05D004003 ORTHO05D004595 7.4e-76 287.3 155 89.0
FAN01G1512 Fragaria x ananassa HOM05D004003 ORTHO05D004595 7.4e-76 287.3 155 89.0
FAN06G3020 Fragaria x ananassa HOM05D004003 ORTHO05D004595 7.4e-76 287.3 155 89.0
Prupe.2G302600 Prunus persica HOM05D004003 ORTHO05D004595 7.4e-76 287.3 155 89.0
BraA02t06220Z Brassica rapa HOM05D004003 ORTHO05D004595 9.7e-76 287.0 168 82.7
CSS0000705 Camellia sinensis var. sinensis HOM05D004003 ORTHO05D004595 9.7e-76 287.0 162 84.6
FAN03G0349 Fragaria x ananassa HOM05D004003 ORTHO05D004595 9.7e-76 287.0 155 88.4
FAN03G2611 Fragaria x ananassa HOM05D004003 ORTHO05D004595 9.7e-76 287.0 155 88.4
TWI14G1326 Tripterygium wilfordii HOM05D004003 ORTHO05D004595 9.7e-76 287.0 172 84.3
Actinidia08590 Actinidia chinensis HOM05D004003 ORTHO05D004595 1.3e-75 286.6 162 84.0
Glyma.09G129000 Glycine max HOM05D004003 ORTHO05D004595 1.3e-75 286.6 165 83.6
FAN06G1184 Fragaria x ananassa HOM05D004003 ORTHO05D004595 1.7e-75 286.2 155 89.0
Gorai.007G013400 Gossypium raimondii HOM05D004003 ORTHO05D004595 1.7e-75 286.2 159 88.7
AL8G27280 Arabidopsis lyrata HOM05D004003 ORTHO05D004595 2.2e-75 285.8 157 87.3
FAN10G2319 Fragaria x ananassa HOM05D004003 ORTHO05D004595 2.8e-75 285.4 155 88.4
Hma1.2p1_1713F.1_g298900 Hydrangea macrophylla HOM05D004003 ORTHO05D004595 2.8e-75 285.4 165 83.0
BraA10t43109Z Brassica rapa HOM05D004003 ORTHO05D004595 4.8e-75 284.6 157 86.0
CARHR265770 Cardamine hirsuta HOM05D004003 ORTHO05D004595 4.8e-75 284.6 164 83.5
MD01G1210300 Malus domestica HOM05D004003 ORTHO05D004595 4.8e-75 284.6 150 90.0
Actinidia31844 Actinidia chinensis HOM05D004003 ORTHO05D004595 6.3e-75 284.3 162 84.0
MD07G1280400 Malus domestica HOM05D004003 ORTHO05D004595 6.3e-75 284.3 150 90.7
Aa31LG3G9080 Aethionema arabicum HOM05D004003 ORTHO05D004595 1.4e-74 283.1 170 82.9
AT5G52840 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 1.4e-74 283.1 157 86.6
RcHm_v2.0_Chr1g0378851 Rosa chinensis HOM05D004003 ORTHO05D004595 1.4e-74 283.1 155 87.1
Sp6g15000 Schrenkiella parvula HOM05D004003 ORTHO05D004595 1.4e-74 283.1 157 86.0
BcaC04g20535 Brassica carinata HOM05D004003 ORTHO05D004595 1.8e-74 282.7 157 86.0
C09p42440 Brassica napus HOM05D004003 ORTHO05D004595 1.8e-74 282.7 157 86.0
Ah.11g045360 Amaranthus hybridus HOM05D004003 ORTHO05D004595 2.4e-74 282.3 161 84.5
BcaB08g35638 Brassica carinata HOM05D004003 ORTHO05D004595 2.4e-74 282.3 157 85.4
Dinv35269 Davidia involucrata HOM05D004003 ORTHO05D004595 2.4e-74 282.3 150 89.3
Gorai.008G273600 Gossypium raimondii HOM05D004003 ORTHO05D004595 2.4e-74 282.3 161 83.9
Hund13071 Selenicereus undatus HOM05D004003 ORTHO05D004595 2.4e-74 282.3 165 81.8
Carub.0008s1300 Capsella rubella HOM05D004003 ORTHO05D004595 3.1e-74 282.0 157 86.0
arahy.Tifrunner.gnm1.ann1.SB31NP Arachis hypogaea HOM05D004003 ORTHO05D004595 4.1e-74 281.6 168 82.1
Oeu061668.1 Olea europaea HOM05D004003 ORTHO05D004595 4.1e-74 281.6 152 88.8
Actinidia03142 Actinidia chinensis HOM05D004003 ORTHO05D004595 5.3e-74 281.2 165 81.2
BcaB05g21985 Brassica carinata HOM05D004003 ORTHO05D004595 5.3e-74 281.2 161 83.9
A10p10290 Brassica napus HOM05D004003 ORTHO05D004595 5.3e-74 281.2 157 85.4
PGR042G1718 Punica granatum HOM05D004003 ORTHO05D004595 5.3e-74 281.2 166 84.3
Aqoxy7G00202 Aquilegia oxysepala HOM05D004003 ORTHO05D004595 6.9e-74 280.8 150 88.7
arahy.Tifrunner.gnm1.ann1.R03NAB Arachis hypogaea HOM05D004003 ORTHO05D004595 6.9e-74 280.8 168 82.1
Gohir.D12G255500 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.2e-73 280.0 161 83.2
Gohir.D12G255550 Gossypium hirsutum HOM05D004003 ORTHO05D004595 1.2e-73 280.0 161 83.2
Rhsim09G0201100 Rhododendron simsii HOM05D004003 ORTHO05D004595 1.2e-73 280.0 150 87.3
Lalb_Chr19g0130491 Lupinus albus HOM05D004003 ORTHO05D004595 1.5e-73 279.6 162 85.8
QL09p012375 Quercus lobata HOM05D004003 ORTHO05D004595 2.0e-73 279.3 150 88.0
Rhsim03G0192400 Rhododendron simsii HOM05D004003 ORTHO05D004595 2.0e-73 279.3 160 82.5
Atru.chr1.335 Acer truncatum HOM05D004003 ORTHO05D004595 2.6e-73 278.9 161 83.2
CANSAT21G1389 Cannabis sativa HOM05D004003 ORTHO05D004595 2.6e-73 278.9 155 85.2
CANSAT21G1446 Cannabis sativa HOM05D004003 ORTHO05D004595 2.6e-73 278.9 155 85.2
DCAR_010652 Daucus carota HOM05D004003 ORTHO05D004595 3.4e-73 278.5 152 88.2
Lj2g0001989 Lotus japonicus HOM05D004003 ORTHO05D004595 3.4e-73 278.5 168 81.0
VMungo0464G2050 Vigna mungo HOM05D004003 ORTHO05D004595 4.5e-73 278.1 168 81.0
Lsat_1_v5_gn_2_131500 Lactuca sativa HOM05D004003 ORTHO05D004595 5.9e-73 277.7 154 87.0
Cc02_g02230 Coffea canephora HOM05D004003 ORTHO05D004595 7.7e-73 277.3 167 79.6
Sc14g0006860 Simmondsia chinensis HOM05D004003 ORTHO05D004595 7.7e-73 277.3 170 79.4
SGA_v2.0_scaffold10G05280 Striga asiatica HOM05D004003 ORTHO05D004595 1.0e-72 276.9 165 83.0
TAR629G0127 Trochodendron aralioides HOM05D004003 ORTHO05D004595 1.0e-72 276.9 150 88.0
Phvul.004G105700 Phaseolus vulgaris HOM05D004003 ORTHO05D004595 1.3e-72 276.6 153 86.3
EL10Ac2g03211 Beta vulgaris HOM05D004003 ORTHO05D004595 1.7e-72 276.2 165 81.2
Lalb_Chr03g0034981 Lupinus albus HOM05D004003 ORTHO05D004595 1.7e-72 276.2 153 86.3
GSVIVG01028820001 Vitis vinifera HOM05D004003 ORTHO05D004595 1.7e-72 276.2 150 86.7
Lsat_1_v5_gn_9_56860 Lactuca sativa HOM05D004003 ORTHO05D004595 2.2e-72 275.8 169 81.1
Oeu003331.1 Olea europaea HOM05D004003 ORTHO05D004595 2.9e-72 275.4 152 86.8
AUR62037745 Chenopodium quinoa HOM05D004003 ORTHO05D004595 3.8e-72 275.0 161 81.4
Migut.F01081 Erythranthe guttata HOM05D004003 ORTHO05D004595 3.8e-72 275.0 165 81.2
SalBow2G3526 Salvia bowleyana HOM05D004003 ORTHO05D004595 3.8e-72 275.0 164 81.7
Gohir.A12G253200 Gossypium hirsutum HOM05D004003 ORTHO05D004595 5.0e-72 274.6 161 81.4
ECA232G1033 Erigeron canadensis HOM05D004003 ORTHO05D004595 8.5e-72 273.9 171 78.4
Dinv28379 Davidia involucrata HOM05D004003 ORTHO05D004595 1.1e-71 273.5 146 90.4
HanXRQChr15g0494181 Helianthus annuus HOM05D004003 ORTHO05D004595 1.4e-71 273.1 155 83.9
DCAR_020275 Daucus carota HOM05D004003 ORTHO05D004595 1.9e-71 272.7 152 87.5
Nn6g32413 Nelumbo nucifera HOM05D004003 ORTHO05D004595 2.5e-71 272.3 165 79.4
MSTRG.8697 Avicennia marina HOM05D004003 ORTHO05D004595 5.5e-71 271.2 151 84.8
Lj1A1007T57 Lonicera japonica HOM05D004003 ORTHO05D004595 9.4e-71 270.4 155 84.5
Lj1A1007T58 Lonicera japonica HOM05D004003 ORTHO05D004595 9.4e-71 270.4 155 84.5
Potri.004G071900 Populus trichocarpa HOM05D004003 ORTHO05D004595 1.2e-70 270.0 158 82.9
C02p19300 Brassica napus HOM05D004003 ORTHO05D004595 2.1e-70 269.2 163 81.0
BolC2t08066H Brassica oleracea HOM05D004003 ORTHO05D004595 2.1e-70 269.2 163 81.0
Peaxi162Scf00444g00034 Petunia axillaris HOM05D004003 ORTHO05D004595 2.1e-70 269.2 164 79.9
Nitab4.5_0011314g0010 Nicotiana tabacum HOM05D004003 ORTHO05D004595 2.7e-70 268.9 164 81.7
Sabra17G0124400 Salix brachista HOM05D004003 ORTHO05D004595 6.1e-70 267.7 158 81.6
PSO017G3679 Papaver somniferum HOM05D004003 ORTHO05D004595 1.0e-69 266.9 152 84.9
Nitab4.5_0000472g0260 Nicotiana tabacum HOM05D004003 ORTHO05D004595 3.9e-69 265.0 152 85.5
Psat5g299680 Pisum sativum HOM05D004003 ORTHO05D004595 3.9e-69 265.0 160 79.4
Solyc03g007660.4 Solanum lycopersicum HOM05D004003 ORTHO05D004595 3.9e-69 265.0 164 81.1
PSO478G4828 Papaver somniferum HOM05D004003 ORTHO05D004595 5.1e-69 264.6 153 83.7
Sopen03g003590 Solanum pennellii HOM05D004003 ORTHO05D004595 5.1e-69 264.6 164 81.1
CAN.G126.15 Capsicum annuum HOM05D004003 ORTHO05D004595 8.8e-69 263.8 164 80.5
ECA233G0998 Erigeron canadensis HOM05D004003 ORTHO05D004595 8.8e-69 263.8 166 75.9
Psat0s1604g0040 Pisum sativum HOM05D004003 ORTHO05D004595 8.8e-69 263.8 160 78.8
HPP92_001384 Vanilla planifolia HOM05D004003 ORTHO05D004595 1.5e-68 263.1 166 77.1
Potri.017G149100 Populus trichocarpa HOM05D004003 ORTHO05D004595 2.0e-68 262.7 158 80.4
unitig_0.g1158 Utricularia gibba HOM05D004003 ORTHO05D004595 2.6e-68 262.3 159 78.6
Ca_20595_v3 Cicer arietinum L. HOM05D004003 ORTHO05D004595 7.4e-68 260.8 149 81.2
TPR.G27150 Trifolium pratense HOM05D004003 ORTHO05D004595 7.4e-68 260.8 160 78.8
Sabra04G0047300 Salix brachista HOM05D004003 ORTHO05D004595 9.7e-68 260.4 149 84.6
Sopen06g012130 Solanum pennellii HOM05D004003 ORTHO05D004595 6.3e-67 257.7 152 82.9
vmacro06614 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 6.3e-67 257.7 223 61.0
Medtr6g053280 Medicago truncatula HOM05D004003 ORTHO05D004595 1.8e-66 256.1 161 75.8
Solyc06g036350.3 Solanum lycopersicum HOM05D004003 ORTHO05D004595 2.4e-66 255.8 152 82.2
CDE05G0545 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 5.3e-66 254.6 161 77.0
PGSC0003DMG400028905 Solanum tuberosum HOM05D004003 ORTHO05D004595 5.3e-66 254.6 152 81.6
CDE05G3305 Ceratophyllum demersum HOM05D004003 ORTHO05D004595 9.1e-66 253.8 161 75.8
ATR0721G154 Amborella trichopoda HOM05D004003 ORTHO05D004595 5.0e-64 248.1 160 74.4
Zm00001eb015010 Zea mays HOM05D004003 ORTHO05D004595 6.5e-64 247.7 160 75.6
Os03g0313000 Oryza sativa ssp. japonica HOM05D004003 ORTHO05D004595 8.5e-64 247.3 146 78.1
AUR62042233 Chenopodium quinoa HOM05D004003 ORTHO05D004595 7.4e-60 234.2 161 71.4
PSO478G1314 Papaver somniferum HOM05D004003 ORTHO05D004595 6.3e-59 231.1 127 85.8
BolC9t57124H Brassica oleracea HOM05D004003 ORTHO05D004595 5.9e-57 224.6 157 70.7
Haze_00063 Corylus avellana HOM05D004003 ORTHO05D004595 6.5e-56 221.1 118 87.3
TAR636G0624 Trochodendron aralioides HOM05D004003 ORTHO05D004595 1.2e-54 216.9 129 83.7
SEGI_14933 Sequoiadendron giganteum HOM05D004003 ORTHO05D004595 1.8e-53 213.0 142 67.6
MD00G1172600 Malus domestica HOM05D004003 ORTHO05D004595 3.7e-51 205.3 132 75.8
Pp3c5_12290 Physcomitrium patens HOM05D004003 ORTHO05D004595 1.2e-46 190.3 134 67.9
MD13G1261600 Malus domestica HOM05D004003 ORTHO05D004595 2.1e-46 189.5 110 80.0
Ah.10g032500 Amaranthus hybridus HOM05D004003 ORTHO05D004595 2.6e-44 182.6 166 59.6
AagrBONN_evm.TU.Sc2ySwM_344.4010 Anthoceros agrestis HOM05D004003 ORTHO05D004595 2.8e-43 179.1 134 62.7
CBR_g31069 Chara braunii HOM05D004003 ORTHO05D004595 8.3e-43 177.6 133 60.9
HanXRQChr10g0304961 Helianthus annuus HOM05D004003 ORTHO05D004595 8.3e-43 177.6 108 84.3
Mapoly0111s0029 Marchantia polymorpha HOM05D004003 ORTHO05D004595 8.3e-43 177.6 134 62.7
vmacro09809 Vaccinium macrocarpon HOM05D004003 ORTHO05D004595 9.1e-42 174.1 127 66.1
Thhalv10015894m.g Eutrema salsugineum HOM05D004003 ORTHO05D004595 1.0e-37 160.6 153 59.5
Zm00001eb395850 Zea mays HOM05D004003 ORTHO05D004595 2.3e-37 159.5 112 74.1
BcaC03g14495 Brassica carinata HOM05D004003 ORTHO05D004595 6.8e-37 157.9 88 90.9
RcHm_v2.0_Chr1g0362161 Rosa chinensis HOM05D004003 ORTHO05D004595 7.0e-34 147.9 86 87.2
SMO119G0129 Selaginella moellendorffii HOM05D004003 ORTHO05D004595 1.6e-33 146.7 120 56.7
Ah.03g141030 Amaranthus hybridus HOM05D004003 ORTHO05D004595 4.4e-28 128.6 99 63.6
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 5.8e-28 128.3 105 67.6
Psat6g098040 Pisum sativum HOM05D000395 ORTHO05D004595 2.2e-27 126.3 98 67.3
ECA240G4047 Erigeron canadensis HOM05D004003 ORTHO05D004595 3.5e-25 119.0 136 42.6
Dinv24022 Davidia involucrata HOM05D004003 ORTHO05D004595 3.9e-24 115.5 71 80.3
ECA238G0868 Erigeron canadensis HOM05D004003 ORTHO05D004595 3.9e-24 115.5 168 39.3
AT4G28005 Arabidopsis thaliana HOM05D004003 ORTHO05D004595 5.0e-24 115.2 163 44.2
ECA240G1980 Erigeron canadensis HOM05D004003 ORTHO05D004595 3.3e-23 112.5 133 41.4
ECA240G4361 Erigeron canadensis HOM05D004003 ORTHO05D004595 3.3e-23 112.5 133 41.4
CAN.G204.11 Capsicum annuum HOM05D004003 ORTHO05D004595 3.6e-22 109.0 56 85.7
BcaC03g14494 Brassica carinata HOM05D004003 ORTHO05D004595 3.4e-20 102.4 61 70.5
COL.COLO4_06858 Corchorus olitorius HOM05D004003 ORTHO05D004595 3.7e-19 99.0 44 95.5
Rhsim03G0124900 Rhododendron simsii HOM05D004003 ORTHO05D004595 2.3e-16 89.7 55 80.0
MCO01G593 Micromonas commoda HOM05D004003 ORTHO05D004595 3.0e-16 89.4 96 42.7
MCO01G594 Micromonas commoda HOM05D004003 ORTHO05D004595 3.0e-16 89.4 96 42.7
CAN.G640.19 Capsicum annuum HOM05D004003 ORTHO05D004595 6.6e-16 88.2 60 68.3
Haze_26197 Corylus avellana HOM05D004003 ORTHO05D004595 2.5e-15 86.3 95 42.1
ATR0721G175 Amborella trichopoda HOM05D004003 ORTHO05D004595 4.4e-12 75.5 60 56.7
Cre13.g568800 Chlamydomonas reinhardtii HOM05D004003 ORTHO05D004595 1.9e-10 70.1 95 42.1


User provided reference genes

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