Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006924.2 Cucumis melo HOM05D003626 ORTHO05D004255 0.0e+00 1363.6 709 100.0
CsaV3_3G017260 Cucumis sativus L. HOM05D003626 ORTHO05D004255 0.0e+00 1326.2 709 97.0
ClCG05G008170 Citrullus lanatus HOM05D003626 ORTHO05D004255 0.0e+00 1167.5 825 79.0
Sed0000543 Sechium edule HOM05D003626 ORTHO05D004255 0.0e+00 1100.5 713 82.7
Sed0014313 Sechium edule HOM05D003626 ORTHO05D004255 5.2e-288 994.2 723 78.3
Prupe.2G297500 Prunus persica HOM05D003626 ORTHO05D004255 1.7e-198 696.8 714 56.7
Manes.14G024700 Manihot esculenta HOM05D003626 ORTHO05D004255 1.3e-195 687.2 719 56.6
RcHm_v2.0_Chr1g0377821 Rosa chinensis HOM05D003626 ORTHO05D004255 1.4e-192 677.2 715 56.5
Manes.06G149800 Manihot esculenta HOM05D003626 ORTHO05D004255 7.2e-189 664.8 715 54.3
MD07G1273500 Malus domestica HOM05D003626 ORTHO05D004255 9.4e-189 664.5 712 55.6
Atru.chr1.420 Acer truncatum HOM05D003626 ORTHO05D004255 2.5e-186 656.4 715 55.1
TWI39G1025 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 8.2e-185 651.4 711 56.8
GSVIVG01028908001 Vitis vinifera HOM05D003626 ORTHO05D004255 1.4e-184 650.6 722 54.3
TWI23G0117 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 6.9e-184 648.3 711 55.7
Cpa.g.sc107.76 Carica papaya HOM05D003626 ORTHO05D004255 1.3e-182 644.0 722 52.8
Gorai.008G275600 Gossypium raimondii HOM05D003626 ORTHO05D004255 1.4e-181 640.6 710 54.2
Duzib084G0771 Durio zibethinus HOM05D003626 ORTHO05D004255 7.2e-181 638.3 710 55.6
FAN03G0953 Fragaria x ananassa HOM05D003626 ORTHO05D004255 3.6e-180 636.0 712 54.6
Gohir.A12G256000 Gossypium hirsutum HOM05D003626 ORTHO05D004255 4.7e-180 635.6 708 53.8
Cfa016262 Carpinus fangiana HOM05D003626 ORTHO05D004255 1.0e-179 634.4 718 52.2
Thecc.03G180000 Theobroma cacao HOM05D003626 ORTHO05D004255 1.0e-179 634.4 708 52.7
FvH4_7g29860 Fragaria vesca HOM05D003626 ORTHO05D004255 3.9e-179 632.5 712 54.9
Potri.015G146300 Populus trichocarpa HOM05D003626 ORTHO05D004255 6.7e-179 631.7 718 52.1
Dinv28414 Davidia involucrata HOM05D003626 ORTHO05D004255 2.8e-177 626.3 639 55.9
Gorai.004G117900 Gossypium raimondii HOM05D003626 ORTHO05D004255 7.0e-176 621.7 702 52.6
MD01G1205100 Malus domestica HOM05D003626 ORTHO05D004255 1.5e-175 620.5 711 52.3
Rhsim03G0188200 Rhododendron simsii HOM05D003626 ORTHO05D004255 1.5e-175 620.5 708 52.1
Duzib068G0520 Durio zibethinus HOM05D003626 ORTHO05D004255 2.2e-174 616.7 702 54.7
Gohir.D12G257400 Gossypium hirsutum HOM05D003626 ORTHO05D004255 1.1e-173 614.4 704 53.3
vmacro06655 Vaccinium macrocarpon HOM05D003626 ORTHO05D004255 2.5e-173 613.2 715 50.8
arahy.Tifrunner.gnm1.ann1.DJI5YQ Arachis hypogaea HOM05D003626 ORTHO05D004255 7.2e-173 611.7 710 51.7
Potri.012G143200 Populus trichocarpa HOM05D003626 ORTHO05D004255 4.7e-172 609.0 710 51.0
arahy.Tifrunner.gnm1.ann1.TX8CZR Arachis hypogaea HOM05D003626 ORTHO05D004255 1.1e-170 604.4 708 51.3
Duzib205G1576 Durio zibethinus HOM05D003626 ORTHO05D004255 2.6e-170 603.2 693 51.5
Glyma.10G233400 Glycine max HOM05D003626 ORTHO05D004255 2.6e-170 603.2 710 52.4
Actinidia25889 Actinidia chinensis HOM05D003626 ORTHO05D000962 3.7e-169 599.4 718 50.8
FAN10G2476 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.1e-168 597.8 714 52.8
FAN10G0313 Fragaria x ananassa HOM05D003626 ORTHO05D004255 2.4e-168 596.7 713 52.9
Gohir.A08G098700 Gossypium hirsutum HOM05D003626 ORTHO05D004255 1.6e-167 594.0 695 51.8
FAN01G0376 Fragaria x ananassa HOM05D003626 ORTHO05D004255 7.7e-167 591.7 718 52.6
Lj1C1001T6 Lonicera japonica HOM05D003626 ORTHO05D004255 1.0e-166 591.3 740 50.0
Gohir.D08G110300 Gossypium hirsutum HOM05D003626 ORTHO05D004255 2.2e-166 590.1 695 51.2
Psat6g197120 Pisum sativum HOM05D003626 ORTHO05D004255 2.2e-166 590.1 728 49.6
TAR629G0048 Trochodendron aralioides HOM05D003626 ORTHO05D004255 3.8e-166 589.3 727 51.3
COL.COLO4_28044 Corchorus olitorius HOM05D003626 ORTHO05D004255 5.0e-166 589.0 711 52.6
Phvul.007G072400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 2.1e-164 583.6 708 50.1
FAN03G3125 Fragaria x ananassa HOM05D003626 ORTHO05D004255 2.7e-164 583.2 712 52.2
Glyma.20G161000 Glycine max HOM05D003626 ORTHO05D004255 6.8e-163 578.6 710 51.0
Hma1.2p1_0227F.1_g095920 Hydrangea macrophylla HOM05D003626 ORTHO05D004255 3.7e-161 572.8 715 48.7
Sabra15G0155500 Salix brachista HOM05D003626 ORTHO05D004255 3.7e-161 572.8 703 49.9
VMungo0720G1546 Vigna mungo HOM05D003626 ORTHO05D004255 3.7e-161 572.8 710 49.7
TPR.G26995 Trifolium pratense HOM05D003626 ORTHO05D004255 1.8e-160 570.5 727 48.3
Haze_00014 Corylus avellana HOM05D003626 ORTHO05D004255 1.1e-157 561.2 774 47.5
Nn6g33408 Nelumbo nucifera HOM05D003626 ORTHO05D004255 3.6e-156 556.2 710 51.0
EL10Ac3g05599 Beta vulgaris HOM05D003626 ORTHO05D004255 1.0e-155 554.7 729 51.2
Ciclev10006582m.g Citrus clementina HOM05D003626 ORTHO05D004255 4.4e-154 549.3 620 54.5
Glyma.16G181700 Glycine max HOM05D003626 ORTHO05D004255 1.4e-152 544.3 725 48.6
Lalb_Chr03g0034731 Lupinus albus HOM05D003626 ORTHO05D004255 5.0e-150 535.8 714 47.5
Medtr1g100810 Medicago truncatula HOM05D003626 ORTHO05D004255 5.0e-150 535.8 725 47.0
Sabra12G0107600 Salix brachista HOM05D003626 ORTHO05D004255 4.0e-147 526.2 724 45.9
TWI14G0197 Tripterygium wilfordii HOM05D003626 ORTHO05D004255 2.6e-146 523.5 637 53.7
CiPaw.05G264100 Carya illinoinensis HOM05D003626 ORTHO05D004255 3.4e-146 523.1 640 49.4
FAN06G2167 Fragaria x ananassa HOM05D003626 ORTHO05D004255 1.7e-145 520.8 568 56.5
Ca_10741_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 8.3e-145 518.5 733 46.1
Aqoxy7G00296 Aquilegia oxysepala HOM05D003626 ORTHO05D004255 1.1e-144 518.1 730 45.9
CANSAT21G2257 Cannabis sativa HOM05D003626 ORTHO05D004255 3.2e-144 516.5 736 48.8
arahy.Tifrunner.gnm1.ann1.26FV7C Arachis hypogaea HOM05D003626 ORTHO05D004255 1.0e-142 511.5 712 46.9
Lalb_Chr19g0130741 Lupinus albus HOM05D003626 ORTHO05D004255 5.0e-142 509.2 709 45.1
arahy.Tifrunner.gnm1.ann1.7Y9ZSE Arachis hypogaea HOM05D003626 ORTHO05D004255 5.6e-141 505.8 714 46.8
PGR042G2663 Punica granatum HOM05D003626 ORTHO05D004255 1.2e-138 498.0 717 46.3
Nn1g01542 Nelumbo nucifera HOM05D003626 ORTHO05D004255 3.7e-137 493.0 809 42.0
DCAR_020260 Daucus carota HOM05D003626 ORTHO05D004255 2.4e-136 490.3 714 44.7
Lalb_Chr06g0161221 Lupinus albus HOM05D003626 ORTHO05D004255 2.4e-136 490.3 719 44.9
Oeu004107.1 Olea europaea HOM05D003626 ORTHO05D004255 2.7e-135 486.9 742 43.5
Phvul.004G113400 Phaseolus vulgaris HOM05D003626 ORTHO05D004255 1.9e-133 480.7 702 44.2
AUR62015951 Chenopodium quinoa HOM05D003626 ORTHO05D004255 2.5e-133 480.3 777 43.4
Nitab4.5_0001951g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 2.5e-133 480.3 713 43.9
Peaxi162Scf00444g00425 Petunia axillaris HOM05D003626 ORTHO05D004255 7.3e-133 478.8 720 44.7
SalBow4G0890 Salvia bowleyana HOM05D003626 ORTHO05D004255 1.2e-132 478.0 712 43.3
Nitab4.5_0004439g0040 Nicotiana tabacum HOM05D003626 ORTHO05D004255 4.7e-132 476.1 712 43.3
TAR636G1367 Trochodendron aralioides HOM05D003626 ORTHO05D004255 1.1e-131 474.9 687 45.1
Lj2g0008392 Lotus japonicus HOM05D003626 ORTHO05D004255 3.1e-131 473.4 720 44.9
AUR62021157 Chenopodium quinoa HOM05D003626 ORTHO05D004255 3.4e-130 469.9 716 46.1
Lsat_1_v5_gn_9_55160 Lactuca sativa HOM05D003626 ORTHO05D004255 1.7e-129 467.6 715 43.5
Dinv35227 Davidia involucrata HOM05D003626 ORTHO05D004255 2.2e-129 467.2 502 55.0
Nitab4.5_0000080g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 4.9e-129 466.1 711 42.9
PGSC0003DMG400015791 Solanum tuberosum HOM05D003626 ORTHO05D004255 1.1e-128 464.9 715 44.3
PSO478G3353 Papaver somniferum HOM05D003626 ORTHO05D004255 4.1e-128 463.0 726 41.7
Sopen03g004280 Solanum pennellii HOM05D003626 ORTHO05D004255 1.3e-126 458.0 713 43.9
Solyc03g025440.3 Solanum lycopersicum HOM05D003626 ORTHO05D004255 1.7e-126 457.6 713 43.9
Lalb_Chr02g0141141 Lupinus albus HOM05D003626 ORTHO05D004255 8.6e-126 455.3 639 46.3
Cc02_g02700 Coffea canephora HOM05D003626 ORTHO05D004255 1.2e-124 451.4 714 42.4
MSTRG.27103 Avicennia marina HOM05D003626 ORTHO05D004255 2.1e-124 450.7 704 41.6
HanXRQChr14g0462361 Helianthus annuus HOM05D003626 ORTHO05D004255 2.1e-124 450.7 645 44.0
Nitab4.5_0000084g0130 Nicotiana tabacum HOM05D003626 ORTHO05D004255 2.1e-124 450.7 712 42.1
Ah.07g206910 Amaranthus hybridus HOM05D003626 ORTHO05D004255 1.8e-123 447.6 629 46.9
PSO782G4415 Papaver somniferum HOM05D003626 ORTHO05D004255 2.6e-122 443.7 743 42.1
Medtr6g053660 Medicago truncatula HOM05D003626 ORTHO05D004255 2.9e-121 440.3 738 41.9
Hund04768 Selenicereus undatus HOM05D003626 ORTHO05D004255 8.3e-121 438.7 720 44.3
TPR.G8172 Trifolium pratense HOM05D003626 ORTHO05D004255 3.5e-119 433.3 568 46.5
CAN.G1175.16 Capsicum annuum HOM05D003626 ORTHO05D004255 5.1e-118 429.5 781 40.3
Psat0s4127g0040 Pisum sativum HOM05D003626 ORTHO05D004255 6.6e-118 429.1 716 43.0
ECA238G3668 Erigeron canadensis HOM05D003626 ORTHO05D004255 8.6e-118 428.7 797 37.1
Lj5g0006318 Lotus japonicus HOM05D003626 ORTHO05D004255 8.4e-113 412.1 804 39.1
Oeu061653.1 Olea europaea HOM05D003626 ORTHO05D004255 4.6e-111 406.4 707 40.0
MSTRG.82 Avicennia marina HOM05D003626 ORTHO05D004255 6.0e-111 406.0 654 40.7
PGR142G2556 Punica granatum HOM05D003626 ORTHO05D004255 6.0e-111 406.0 724 39.5
Sc19g0001390 Simmondsia chinensis HOM05D003626 ORTHO05D004255 3.3e-109 400.2 664 41.1
THA.LOC104811971 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 1.3e-108 398.3 642 43.3
THA.LOC104825103 Tarenaya hassleriana HOM05D003626 ORTHO05D004255 4.8e-108 396.4 636 42.8
BraA03t14686Z Brassica rapa HOM05D003626 ORTHO05D004255 6.4e-105 386.0 687 40.9
A03p56130 Brassica napus HOM05D003626 ORTHO05D004255 1.9e-104 384.4 686 40.2
DCAR_029574 Daucus carota HOM05D003626 ORTHO05D004255 1.9e-104 384.4 662 40.2
FAN06G1666 Fragaria x ananassa HOM05D003626 ORTHO05D004255 2.1e-103 380.9 729 39.5
Migut.F00325 Erythranthe guttata HOM05D003626 ORTHO05D004255 2.7e-103 380.6 707 38.6
C07p54460 Brassica napus HOM05D003626 ORTHO05D004255 3.3e-101 373.6 691 40.8
Migut.F01102 Erythranthe guttata HOM05D003626 ORTHO05D004255 5.6e-101 372.9 654 40.5
BolC7t45931H Brassica oleracea HOM05D003626 ORTHO05D004255 7.3e-101 372.5 691 40.7
C01p21150 Brassica napus HOM05D003626 ORTHO05D004255 2.1e-100 370.9 685 40.3
AT4G25610 Arabidopsis thaliana HOM05D003626 ORTHO05D004255 6.2e-100 369.4 688 39.2
Aa31LG3G8800 Aethionema arabicum HOM05D003626 ORTHO05D004255 1.1e-99 368.6 629 42.4
ATR0680G428 Amborella trichopoda HOM05D003626 ORTHO05D004255 1.8e-99 367.9 542 43.4
ECA233G2749 Erigeron canadensis HOM05D003626 ORTHO05D004255 3.1e-99 367.1 583 41.0
Thhalv10024755m.g Eutrema salsugineum HOM05D003626 ORTHO05D004255 5.3e-99 366.3 686 39.2
SGA_v2.0_scaffold60G21078 Striga asiatica HOM05D003626 ORTHO05D004255 1.2e-98 365.2 704 38.5
Sp7g23640 Schrenkiella parvula HOM05D003626 ORTHO05D004255 1.5e-98 364.8 688 38.8
AL7G27480 Arabidopsis lyrata HOM05D003626 ORTHO05D004255 4.5e-98 363.2 691 38.9
CARHR233030 Cardamine hirsuta HOM05D003626 ORTHO05D004255 1.7e-97 361.3 692 39.2
Eucgr.L00411 Eucalyptus grandis HOM05D003626 ORTHO05D004255 3.8e-97 360.1 285 65.6
Carub.0007s1537 Capsella rubella HOM05D003626 ORTHO05D004255 1.4e-96 358.2 693 39.5
A01p16870 Brassica napus HOM05D003626 ORTHO05D004255 5.4e-96 356.3 685 38.7
BcaC09g50754 Brassica carinata HOM05D003626 ORTHO05D004255 1.8e-94 351.3 684 38.6
Solyc06g036060.4 Solanum lycopersicum HOM05D003626 ORTHO05D004255 2.1e-92 344.4 719 36.0
BcaNung03703 Brassica carinata HOM05D003626 ORTHO05D004255 5.3e-91 339.7 684 38.5
BcaC06g32796 Brassica carinata HOM05D003626 ORTHO05D004255 3.4e-90 337.0 694 37.0
CDE06G1616 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 2.3e-86 324.3 715 35.2
Sopen06g011810 Solanum pennellii HOM05D003626 ORTHO05D004255 1.3e-84 318.5 398 47.7
TAR375G0013 Trochodendron aralioides HOM05D003626 ORTHO05D004255 4.1e-83 313.5 298 60.7
HPP92_001476 Vanilla planifolia HOM05D003626 ORTHO05D004255 6.9e-83 312.8 380 47.4
Eucgr.E00978 Eucalyptus grandis HOM05D003626 ORTHO05D004255 1.1e-80 305.4 285 58.9
VMungo0464G2114 Vigna mungo HOM05D003626 ORTHO05D002946 2.7e-79 300.8 373 50.1
Os09g0570200 Oryza sativa ssp. japonica HOM05D003626 ORTHO05D004255 4.3e-77 293.5 587 37.3
unitig_0.g459 Utricularia gibba HOM05D003626 ORTHO05D004255 3.7e-76 290.4 616 35.9
CDE02G1538 Ceratophyllum demersum HOM05D003626 ORTHO05D004255 1.1e-75 288.9 724 35.4
Eucgr.A02765 Eucalyptus grandis HOM05D003626 ORTHO05D004255 5.0e-73 280.0 348 50.9
Zm00001eb095880 Zea mays HOM05D003626 ORTHO05D004255 5.0e-73 280.0 594 35.7
SMO347G0135 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 3.6e-71 273.9 689 32.2
SEGI_20458 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 7.9e-71 272.7 361 44.6
Peaxi162Scf00848g00116 Petunia axillaris HOM05D003626 ORTHO05D004255 3.0e-70 270.8 244 57.4
unitig_22.g5223 Utricularia gibba HOM05D003626 ORTHO05D004255 3.0e-70 270.8 338 46.7
Sc13g0008850 Simmondsia chinensis HOM05D003626 ORTHO05D004255 1.6e-63 248.4 656 32.3
CSS0005394 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 2.6e-61 241.1 446 38.8
Mapoly0003s0245 Marchantia polymorpha HOM05D003626 ORTHO05D004255 1.4e-59 235.3 293 46.4
Lalb_Chr21g0305131 Lupinus albus HOM05D003626 ORTHO05D004255 1.1e-56 225.7 502 37.8
CSS0041965 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 1.6e-50 205.3 139 72.7
CSS0037833 Camellia sinensis var. sinensis HOM05D003626 ORTHO05D004255 1.7e-44 185.3 140 69.3
Pp3c10_4090 Physcomitrium patens HOM05D003626 ORTHO05D004255 9.4e-40 169.5 207 46.4
HPP92_011473 Vanilla planifolia HOM05D003626 ORTHO05D004255 2.1e-39 168.3 179 55.3
Zm00001eb224460 Zea mays HOM05D003626 ORTHO05D004255 1.4e-35 155.6 131 60.3
Ca_13872_v3 Cicer arietinum L. HOM05D003626 ORTHO05D004255 7.0e-35 153.3 460 32.8
MBI18_g29423_MAGBIO Magnolia biondii HOM05D003626 ORTHO05D004255 5.9e-34 150.2 731 30.5
SEGI_33334 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 3.3e-32 144.4 258 36.4
AagrBONN_evm.TU.Sc2ySwM_344.1743 Anthoceros agrestis HOM05D003626 ORTHO05D004255 5.2e-30 137.1 307 33.2
MBI17_g24687_MAGBIO Magnolia biondii HOM05D003626 ORTHO05D004255 6.4e-28 130.2 453 32.5
SEGI_03018 Sequoiadendron giganteum HOM05D003626 ORTHO05D004255 3.2e-27 127.9 98 66.3
Glyma.09G136202 Glycine max HOM05D003626 ORTHO05D004255 4.1e-27 127.5 150 55.3
SMO356G0700 Selaginella moellendorffii HOM05D003626 ORTHO05D004255 7.8e-26 123.2 210 39.0
PGSC0003DMG400029919 Solanum tuberosum HOM05D003626 ORTHO05D004255 6.0e-18 97.1 469 29.0
TAR375G0355 Trochodendron aralioides HOM05D003626 ORTHO05D004255 2.1e-15 88.6 67 70.1
ECA233G5443 Erigeron canadensis HOM05D003626 ORTHO05D004255 8.9e-14 83.2 67 58.2
Pp3c10_4110 Physcomitrium patens HOM05D003626 ORTHO05D004255 2.0e-13 82.0 99 46.5
TAR636G0984 Trochodendron aralioides HOM05D003626 ORTHO05D004255 2.2e-12 78.6 55 72.7
TAR375G0736 Trochodendron aralioides HOM05D003626 ORTHO05D004255 2.7e-10 71.6 107 46.7
HPP92_001484 Vanilla planifolia HOM05D003626 ORTHO05D004255 3.9e-09 67.8 53 54.7
AagrBONN_evm.TU.Sc2ySwM_362.2615 Anthoceros agrestis HOM05D003626 ORTHO05D004255 5.6e-08 63.9 136 37.5
SHI13766 Sapria himalayana HOM05D003626 ORTHO05D004255 3.1e-06 58.2 197 26.9
HPP92_027487 Vanilla planifolia HOM05D003626 ORTHO05D004255 6.8e-06 57.0 48 68.8
HPP92_028446 Vanilla planifolia HOM05D003626 ORTHO05D004255 6.8e-06 57.0 131 32.1


User provided reference genes

Program Settings