Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006892.2 Cucumis melo HOM05D006594 ORTHO05D008383 7.9e-261 903.3 467 100.0
CsaV3_3G016960 Cucumis sativus L. HOM05D006594 ORTHO05D008383 1.3e-247 859.4 468 94.4
ClCG05G007930 Citrullus lanatus HOM05D006594 ORTHO05D008383 6.7e-236 820.5 465 90.5
Sed0005391 Sechium edule HOM05D006594 ORTHO05D008383 2.9e-194 682.2 428 80.8
Cfa008301 Carpinus fangiana HOM05D006594 ORTHO05D008383 1.8e-156 556.6 468 60.9
Duzib205G1849 Durio zibethinus HOM05D006594 ORTHO05D008383 3.7e-149 532.3 470 58.7
COL.COLO4_14285 Corchorus olitorius HOM05D006594 ORTHO05D008383 1.4e-148 530.4 464 59.9
CiPaw.03G104400 Carya illinoinensis HOM05D006594 ORTHO05D008383 1.0e-146 524.2 468 58.5
Ciclev10004900m.g Citrus clementina HOM05D006594 ORTHO05D008383 7.1e-145 518.1 476 55.9
Potri.015G140900 Populus trichocarpa HOM05D006594 ORTHO05D008383 1.5e-142 510.4 481 56.1
QL09p014600 Quercus lobata HOM05D006594 ORTHO05D008383 4.3e-142 508.8 468 57.5
Manes.14G027600 Manihot esculenta HOM05D006594 ORTHO05D008383 3.4e-139 499.2 472 55.1
Prupe.2G292200 Prunus persica HOM05D006594 ORTHO05D008383 3.4e-139 499.2 468 57.3
Sabra15G0151500 Salix brachista HOM05D006594 ORTHO05D008383 3.4e-139 499.2 471 55.4
Eucgr.K00239 Eucalyptus grandis HOM05D006594 ORTHO05D008383 1.3e-138 497.3 482 54.6
MD07G1266600 Malus domestica HOM05D006594 ORTHO05D008383 2.7e-136 489.6 470 56.0
TWI23G0502 Tripterygium wilfordii HOM05D006594 ORTHO05D008383 1.3e-135 487.3 471 55.2
RcHm_v2.0_Chr1g0376971 Rosa chinensis HOM05D006594 ORTHO05D008383 2.5e-134 483.0 471 56.1
Haze_13736 Corylus avellana HOM05D006594 ORTHO05D008383 7.4e-134 481.5 466 54.5
Ca_10784_v3 Cicer arietinum L. HOM05D006594 ORTHO05D008383 6.9e-132 474.9 471 53.5
Gohir.D12G260500 Gossypium hirsutum HOM05D006594 ORTHO05D008383 3.4e-131 472.6 474 53.0
Gorai.008G279100 Gossypium raimondii HOM05D006594 ORTHO05D008383 1.7e-130 470.3 472 53.0
Thhalv10013484m.g Eutrema salsugineum HOM05D006594 ORTHO05D008383 4.3e-126 455.7 472 51.3
PGR142G0281 Punica granatum HOM05D006594 ORTHO05D008383 4.3e-126 455.7 469 51.6
Carub.0008s1227 Capsella rubella HOM05D006594 ORTHO05D008383 1.7e-125 453.8 471 49.9
AT5G52180 Arabidopsis thaliana HOM05D006594 ORTHO05D008383 2.8e-125 453.0 473 50.1
Sp6g14430 Schrenkiella parvula HOM05D006594 ORTHO05D008383 2.8e-125 453.0 473 49.9
AL8G26560 Arabidopsis lyrata HOM05D006594 ORTHO05D008383 8.2e-125 451.4 471 49.5
Phvul.007G067900 Phaseolus vulgaris HOM05D006594 ORTHO05D008383 1.8e-124 450.3 470 53.4
Psat6g200680 Pisum sativum HOM05D006594 ORTHO05D008383 4.1e-124 449.1 469 51.8
Sc19g0001600 Simmondsia chinensis HOM05D006594 ORTHO05D008383 5.3e-124 448.7 464 49.6
Hma1.2p1_1323F.1_g275590 Hydrangea macrophylla HOM05D006594 ORTHO05D008383 2.0e-123 446.8 474 50.4
Aa31LG3G8560 Aethionema arabicum HOM05D006594 ORTHO05D008383 4.5e-123 445.7 471 49.5
LjContig00238g0014067 Lotus japonicus HOM05D006594 ORTHO05D008383 4.5e-123 445.7 469 51.8
THA.LOC104825095 Tarenaya hassleriana HOM05D006594 ORTHO05D008383 5.9e-123 445.3 472 48.1
Manes.06G145800 Manihot esculenta HOM05D006594 ORTHO05D008383 1.7e-122 443.7 472 50.8
CARHR265100 Cardamine hirsuta HOM05D006594 ORTHO05D008383 8.5e-122 441.4 471 47.3
Cc02_g03190 Coffea canephora HOM05D006594 ORTHO05D008383 2.5e-121 439.9 470 50.2
CSS0002088 Camellia sinensis var. sinensis HOM05D006594 ORTHO05D008383 3.2e-121 439.5 466 50.6
FAN10G1161 Fragaria x ananassa HOM05D006594 ORTHO05D008383 3.2e-121 439.5 479 51.8
Glyma.10G237700 Glycine max HOM05D006594 ORTHO05D008383 5.5e-121 438.7 474 51.5
BcaC04g20605 Brassica carinata HOM05D006594 ORTHO05D008383 1.2e-120 437.6 471 49.3
C09p41600 Brassica napus HOM05D006594 ORTHO05D008383 1.2e-120 437.6 471 49.3
BolC9t57044H Brassica oleracea HOM05D006594 ORTHO05D008383 1.2e-120 437.6 471 49.3
BcaB08g35566 Brassica carinata HOM05D006594 ORTHO05D008383 1.6e-120 437.2 472 49.2
CSS0024482 Camellia sinensis var. sinensis HOM05D006594 ORTHO05D008383 1.6e-120 437.2 466 50.4
A10p09870 Brassica napus HOM05D006594 ORTHO05D008383 2.7e-120 436.4 471 48.8
BraA10t43068Z Brassica rapa HOM05D006594 ORTHO05D008383 3.6e-120 436.0 471 48.8
Glyma.20G156900 Glycine max HOM05D006594 ORTHO05D008383 3.0e-119 433.0 471 50.5
Medtr1g100767 Medicago truncatula HOM05D006594 ORTHO05D008383 5.1e-119 432.2 471 49.7
FAN06G4553 Fragaria x ananassa HOM05D006594 ORTHO05D008383 4.4e-118 429.1 481 50.3
FAN01G0792 Fragaria x ananassa HOM05D006594 ORTHO05D008383 6.3e-117 425.2 472 51.3
Lsat_1_v5_gn_0_29900 Lactuca sativa HOM05D006594 ORTHO05D008383 6.3e-117 425.2 478 47.1
FAN06G0009 Fragaria x ananassa HOM05D006594 ORTHO05D008383 8.2e-117 424.9 481 49.9
Lalb_Chr06g0161051 Lupinus albus HOM05D006594 ORTHO05D008383 4.1e-116 422.5 475 50.1
Peaxi162Scf00915g00007 Petunia axillaris HOM05D006594 ORTHO05D008383 5.3e-116 422.2 471 47.3
SGA_v2.0_scaffold113G31757 Striga asiatica HOM05D006594 ORTHO05D008383 7.0e-116 421.8 458 50.2
Sopen03g004840 Solanum pennellii HOM05D006594 ORTHO05D008383 7.7e-115 418.3 474 47.7
DCAR_009355 Daucus carota HOM05D006594 ORTHO05D008383 6.5e-114 415.2 467 48.2
Aqoxy7G00398 Aquilegia oxysepala HOM05D006594 ORTHO05D008383 1.9e-113 413.7 473 47.8
PGSC0003DMG400014324 Solanum tuberosum HOM05D006594 ORTHO05D008383 1.9e-113 413.7 473 47.8
Solyc03g026010.3 Solanum lycopersicum HOM05D006594 ORTHO05D008383 2.5e-113 413.3 474 47.3
Oeu022583.1 Olea europaea HOM05D006594 ORTHO05D008383 3.2e-113 412.9 472 46.2
PSO782G0556 Papaver somniferum HOM05D006594 ORTHO05D008383 4.2e-113 412.5 471 48.8
GSVIVG01010594001 Vitis vinifera HOM05D006594 ORTHO05D008383 5.5e-113 412.1 460 48.5
MSTRG.8446 Avicennia marina HOM05D006594 ORTHO05D008383 9.4e-113 411.4 475 46.7
HanXRQChr09g0253731 Helianthus annuus HOM05D006594 ORTHO05D008383 9.4e-113 411.4 478 47.1
Migut.F01134 Erythranthe guttata HOM05D006594 ORTHO05D008383 1.2e-112 411.0 466 48.7
CAN.G856.1 Capsicum annuum HOM05D006594 ORTHO05D008383 4.7e-112 409.1 470 46.8
FAN03G3172 Fragaria x ananassa HOM05D006594 ORTHO05D008383 1.0e-111 407.9 445 51.7
TPR.G14337 Trifolium pratense HOM05D006594 ORTHO05D008383 7.2e-105 385.2 451 47.0
arahy.Tifrunner.gnm1.ann1.GIF0V2 Arachis hypogaea HOM05D006594 ORTHO05D008383 4.7e-104 382.5 408 49.5
SalBow2G3298 Salvia bowleyana HOM05D006594 ORTHO05D008383 4.7e-104 382.5 464 45.9
Dinv28461 Davidia involucrata HOM05D006594 ORTHO05D008383 1.4e-103 380.9 433 48.5
PSO478G3258 Papaver somniferum HOM05D006594 ORTHO05D008383 1.4e-103 380.9 443 47.6
arahy.Tifrunner.gnm1.ann1.MGJ2V1 Arachis hypogaea HOM05D006594 ORTHO05D008383 3.0e-103 379.8 453 46.4
AUR62021215 Chenopodium quinoa HOM05D006594 ORTHO05D008383 4.0e-103 379.4 413 47.5
Actinidia32874 Actinidia chinensis HOM05D006594 ORTHO05D008383 6.8e-103 378.6 406 48.5
Ah.13g068460 Amaranthus hybridus HOM05D006594 ORTHO05D008383 8.8e-103 378.3 470 43.8
vmacro06700 Vaccinium macrocarpon HOM05D006594 ORTHO05D008383 4.4e-102 375.9 425 48.9
MBI12_g14429_MAGBIO Magnolia biondii HOM05D006594 ORTHO05D008383 2.8e-101 373.2 408 49.8
Gohir.A12G259700 Gossypium hirsutum HOM05D006594 ORTHO05D008383 4.1e-100 369.4 377 52.0
Rhsim03G0179000 Rhododendron simsii HOM05D006594 ORTHO05D008383 4.1e-100 369.4 409 49.1
TAR374G1009 Trochodendron aralioides HOM05D006594 ORTHO05D008383 2.0e-99 367.1 355 53.0
CDE11G0822 Ceratophyllum demersum HOM05D006594 ORTHO05D008383 9.1e-92 341.7 463 39.5
Gorai.004G119800 Gossypium raimondii HOM05D006594 ORTHO05D008383 6.8e-87 325.5 471 42.7
Gohir.A08G100500 Gossypium hirsutum HOM05D006594 ORTHO05D008383 2.7e-83 313.5 357 48.5
ATR0757G038 Amborella trichopoda HOM05D006594 ORTHO05D008383 1.5e-81 307.8 596 35.2
AUR62016008 Chenopodium quinoa HOM05D006594 ORTHO05D008383 3.6e-80 303.1 438 40.9
A06p20700 Brassica napus HOM05D006594 ORTHO05D008383 9.5e-73 278.5 237 57.4
Thecc.03G173100 Theobroma cacao HOM05D006594 ORTHO05D008383 9.8e-70 268.5 262 53.8
Nitab4.5_0001508g0080 Nicotiana tabacum HOM05D006594 ORTHO05D008383 3.5e-67 260.0 237 51.9
FvH4_7g29210 Fragaria vesca HOM05D006594 ORTHO05D008383 1.7e-66 257.7 342 45.3
Gohir.D08G112040 Gossypium hirsutum HOM05D006594 ORTHO05D008383 1.2e-62 245.0 455 37.6
SEGI_30493 Sequoiadendron giganteum HOM05D006594 ORTHO05D008383 7.3e-57 225.7 529 31.4
unitig_0.g463 Utricularia gibba HOM05D006594 ORTHO05D008383 2.0e-54 217.6 258 44.2
Lj1P995T25 Lonicera japonica HOM05D006594 ORTHO05D008383 3.8e-45 186.8 143 63.6
Nitab4.5_0000716g0260 Nicotiana tabacum HOM05D006594 ORTHO05D008383 5.6e-41 172.9 310 35.2
SMO116G0206 Selaginella moellendorffii HOM05D006594 ORTHO05D008383 7.4e-41 172.6 472 27.3
Zm00001eb378500 Zea mays HOM05D006594 ORTHO05D008383 9.9e-38 162.2 457 31.7
MD01G1198800 Malus domestica HOM05D006594 ORTHO05D008383 5.1e-34 149.8 466 29.2
AL1G10170 Arabidopsis lyrata HOM05D006594 ORTHO05D008383 7.4e-33 146.0 120 60.0
arahy.Tifrunner.gnm1.ann1.J8117K Arachis hypogaea HOM05D006594 ORTHO05D008383 3.7e-32 143.7 216 38.9
Mapoly0061s0021 Marchantia polymorpha HOM05D006594 ORTHO05D008383 4.8e-32 143.3 512 24.2
Os06g0129000 Oryza sativa ssp. japonica HOM05D006594 ORTHO05D008383 1.3e-29 135.2 462 28.6
arahy.Tifrunner.gnm1.ann1.A65ZGP Arachis hypogaea HOM05D006594 ORTHO05D008383 1.8e-26 124.8 179 40.2
Duzib068G0509 Durio zibethinus HOM05D006594 ORTHO05D008383 2.3e-26 124.4 182 44.0
arahy.Tifrunner.gnm1.ann1.PB1XHH Arachis hypogaea HOM05D006594 ORTHO05D008383 4.3e-25 120.2 250 34.0
EL10Ac3g05712 Beta vulgaris HOM05D006594 ORTHO05D008383 1.1e-20 105.5 124 48.4
unitig_0.g462 Utricularia gibba HOM05D006594 ORTHO05D008383 7.2e-20 102.8 150 41.3
Atru.chr1.484 Acer truncatum HOM05D006594 ORTHO05D008383 5.1e-18 96.7 119 48.7
VMungo0331G1728 Vigna mungo HOM05D006594 ORTHO05D008383 6.7e-18 96.3 100 49.0
Lj1E995T0 Lonicera japonica HOM05D006594 ORTHO05D008383 2.5e-17 94.4 139 43.2
SMO195G0004 Selaginella moellendorffii HOM05D025148 ORTHO05D050897 1.5e-09 68.6 116 32.8
SMO195G0056 Selaginella moellendorffii HOM05D006594 ORTHO05D008383 1.7e-08 65.1 121 29.8


User provided reference genes

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