Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006858.2 Cucumis melo HOM05D005135 ORTHO05D005810 2.5e-131 472.2 257 100.0
CsaV3_3G016630 Cucumis sativus L. HOM05D005135 ORTHO05D005810 3.7e-127 458.4 257 97.3
ClCG05G007690 Citrullus lanatus HOM05D005135 ORTHO05D005810 1.0e-124 450.3 257 94.9
Sed0024541 Sechium edule HOM05D005135 ORTHO05D005810 2.3e-100 369.4 260 80.0
Sed0023089 Sechium edule HOM05D005135 ORTHO05D005810 8.6e-92 340.9 255 76.1
Thecc.03G166900 Theobroma cacao HOM05D005135 ORTHO05D005810 1.7e-87 326.6 257 70.8
COL.COLO4_14228 Corchorus olitorius HOM05D005135 ORTHO05D005810 2.7e-85 319.3 255 69.0
Dinv35139 Davidia involucrata HOM05D005135 ORTHO05D005810 1.3e-84 317.0 255 70.6
Duzib084G0614 Durio zibethinus HOM05D005135 ORTHO05D005810 1.3e-84 317.0 257 69.6
Duzib068G0893 Durio zibethinus HOM05D005135 ORTHO05D005810 2.8e-82 309.3 257 67.3
GSVIVG01018448001 Vitis vinifera HOM05D005135 ORTHO05D005810 6.2e-82 308.1 257 67.7
Hma1.2p1_0488F.1_g163940 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 1.4e-81 307.0 255 68.2
FAN01G0847 Fragaria x ananassa HOM05D005135 ORTHO05D005810 3.4e-80 302.4 253 68.4
Gohir.D08G104900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 3.4e-80 302.4 257 66.5
CiPaw.03G100200 Carya illinoinensis HOM05D005135 ORTHO05D005810 9.8e-80 300.8 254 70.1
Gohir.D12G262900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 9.8e-80 300.8 257 66.9
Glyma.10G240700 Glycine max HOM05D005135 ORTHO05D005810 1.3e-79 300.4 257 66.9
Gorai.008G281800 Gossypium raimondii HOM05D005135 ORTHO05D005810 1.7e-79 300.1 257 66.9
Gohir.A12G262200 Gossypium hirsutum HOM05D005135 ORTHO05D005810 8.3e-79 297.7 257 66.5
Gohir.A08G093700 Gossypium hirsutum HOM05D005135 ORTHO05D005810 2.4e-78 296.2 257 65.4
VMungo0720G1039 Vigna mungo HOM05D005135 ORTHO05D005810 4.1e-78 295.4 257 65.8
Manes.14G031000 Manihot esculenta HOM05D005135 ORTHO05D005810 2.1e-77 293.1 257 65.4
Phvul.007G065300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 2.1e-77 293.1 257 65.4
vmacro09870 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 2.7e-77 292.7 250 68.0
Actinidia31800 Actinidia chinensis HOM05D005135 ORTHO05D005810 1.0e-76 290.8 253 68.0
CAN.G1187.4 Capsicum annuum HOM05D005135 ORTHO05D005810 1.7e-76 290.0 251 67.3
Potri.015G135000 Populus trichocarpa HOM05D005135 ORTHO05D005810 1.9e-75 286.6 258 67.1
Peaxi162Scf00557g00212 Petunia axillaris HOM05D005135 ORTHO05D005810 5.6e-75 285.0 253 66.0
FAN10G2880 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.6e-74 283.5 286 59.1
CSS0048110 Camellia sinensis var. sinensis HOM05D005135 ORTHO05D005810 6.2e-74 281.6 253 66.0
Nitab4.5_0000205g0180 Nicotiana tabacum HOM05D005135 ORTHO05D005810 1.1e-73 280.8 253 65.6
unitig_52.g17751 Utricularia gibba HOM05D005135 ORTHO05D005810 5.2e-73 278.5 251 65.7
Oeu030142.1 Olea europaea HOM05D005135 ORTHO05D005810 6.8e-73 278.1 254 64.2
arahy.Tifrunner.gnm1.ann1.UR3NDK Arachis hypogaea HOM05D005135 ORTHO05D005810 1.2e-72 277.3 257 64.2
Sopen11g029970 Solanum pennellii HOM05D005135 ORTHO05D005810 1.2e-72 277.3 254 64.2
Solyc11g072300.2 Solanum lycopersicum HOM05D005135 ORTHO05D005810 2.6e-72 276.2 254 63.8
Lalb_Chr06g0160891 Lupinus albus HOM05D005135 ORTHO05D005810 3.4e-72 275.8 257 62.3
CAN.G1182.3 Capsicum annuum HOM05D005135 ORTHO05D005810 4.4e-72 275.4 250 64.4
Oeu022533.1 Olea europaea HOM05D005135 ORTHO05D005810 4.4e-72 275.4 247 64.8
arahy.Tifrunner.gnm1.ann1.3G6IEL Arachis hypogaea HOM05D005135 ORTHO05D005810 5.8e-72 275.0 257 63.8
Nn1g01287 Nelumbo nucifera HOM05D005135 ORTHO05D005810 5.8e-72 275.0 261 63.2
PGSC0003DMG400027379 Solanum tuberosum HOM05D005135 ORTHO05D005810 9.9e-72 274.2 251 64.5
Glyma.20G154000 Glycine max HOM05D005135 ORTHO05D005810 1.7e-71 273.5 257 63.8
Ciclev10005677m.g Citrus clementina HOM05D005135 ORTHO05D005810 2.9e-71 272.7 260 65.0
Ca_10813_v3 Cicer arietinum L. HOM05D005135 ORTHO05D005810 4.9e-71 271.9 255 62.0
TWI23G0093 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 6.4e-71 271.6 251 64.9
Eucgr.K00188 Eucalyptus grandis HOM05D005135 ORTHO05D005810 8.4e-71 271.2 257 64.2
Migut.F01160 Erythranthe guttata HOM05D005135 ORTHO05D005810 1.4e-70 270.4 252 65.9
FAN06G3133 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.9e-70 270.0 253 62.8
FAN06G4903 Fragaria x ananassa HOM05D005135 ORTHO05D005810 4.1e-70 268.9 253 62.5
Sopen03g002840 Solanum pennellii HOM05D005135 ORTHO05D005810 5.4e-70 268.5 255 62.4
MSTRG.8780 Avicennia marina HOM05D005135 ORTHO05D005810 7.1e-70 268.1 249 64.7
RcHm_v2.0_Chr1g0376221 Rosa chinensis HOM05D005135 ORTHO05D005810 1.2e-69 267.3 250 64.4
Sc13g0008230 Simmondsia chinensis HOM05D005135 ORTHO05D005810 2.1e-69 266.5 254 61.8
Solyc03g006850.3 Solanum lycopersicum HOM05D005135 ORTHO05D005810 2.1e-69 266.5 255 62.0
Prupe.2G287200 Prunus persica HOM05D005135 ORTHO05D005810 3.5e-69 265.8 249 64.3
FAN03G3482 Fragaria x ananassa HOM05D005135 ORTHO05D005810 4.6e-69 265.4 253 62.1
TAR629G2517 Trochodendron aralioides HOM05D005135 ORTHO05D005810 6.0e-69 265.0 256 61.7
Sabra15G0147000 Salix brachista HOM05D005135 ORTHO05D005810 1.3e-68 263.8 278 60.1
SGA_v2.0_scaffold10G05426 Striga asiatica HOM05D005135 ORTHO05D005810 1.7e-68 263.5 251 64.9
AUR62021268 Chenopodium quinoa HOM05D005135 ORTHO05D005810 3.0e-68 262.7 258 60.5
FvH4_7g28720 Fragaria vesca HOM05D005135 ORTHO05D005810 5.1e-68 261.9 249 62.2
EL10Ac3g05742 Beta vulgaris HOM05D005135 ORTHO05D005810 1.5e-67 260.4 250 60.8
Lj5g0000742 Lotus japonicus HOM05D005135 ORTHO05D005810 1.9e-67 260.0 257 60.7
ATR0661G043 Amborella trichopoda HOM05D005135 ORTHO05D005810 1.2e-66 257.3 258 61.2
Oeu030256.1 Olea europaea HOM05D005135 ORTHO05D005810 1.6e-66 256.9 254 61.8
PSO782G0956 Papaver somniferum HOM05D005135 ORTHO05D005810 2.8e-66 256.1 257 59.1
Medtr1g101945 Medicago truncatula HOM05D005135 ORTHO05D005810 6.2e-66 255.0 249 60.2
Nitab4.5_0001573g0020 Nicotiana tabacum HOM05D005135 ORTHO05D005810 6.2e-66 255.0 248 62.9
CDE07G1455 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 1.8e-65 253.4 258 58.5
MD00G1004200 Malus domestica HOM05D005135 ORTHO05D005810 3.1e-65 252.7 249 61.8
Aa31LG3G8280 Aethionema arabicum HOM05D005135 ORTHO05D005810 4.0e-65 252.3 258 60.1
Ah.07g208790 Amaranthus hybridus HOM05D005135 ORTHO05D005810 5.2e-65 251.9 250 60.4
A03p16010 Brassica napus HOM05D005135 ORTHO05D005810 6.9e-65 251.5 255 59.6
TWI39G0390 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 6.9e-65 251.5 251 61.4
HanXRQChr14g0461821 Helianthus annuus HOM05D005135 ORTHO05D005810 8.9e-65 251.1 251 61.8
SGA_v2.0_scaffold303G47872 Striga asiatica HOM05D005135 ORTHO05D005810 4.4e-64 248.8 301 56.1
ECA238G2105 Erigeron canadensis HOM05D005135 ORTHO05D005810 7.6e-64 248.1 251 59.8
BolC3t14274H Brassica oleracea HOM05D005135 ORTHO05D005810 9.9e-64 247.7 255 58.8
MD01G1193100 Malus domestica HOM05D005135 ORTHO05D005810 1.3e-63 247.3 248 60.5
BcaC01g06140 Brassica carinata HOM05D005135 ORTHO05D005810 1.7e-63 246.9 255 58.8
Lj1A988G25 Lonicera japonica HOM05D005135 ORTHO05D005810 2.2e-63 246.5 227 64.3
C03p18840 Brassica napus HOM05D005135 ORTHO05D005810 4.9e-63 245.4 255 58.4
VMungo0464G2082 Vigna mungo HOM05D000559 ORTHO05D005810 6.4e-63 245.0 260 58.5
BraA03t10892Z Brassica rapa HOM05D005135 ORTHO05D005810 8.4e-63 244.6 255 58.4
Psat7g169320 Pisum sativum HOM05D005135 ORTHO05D005810 1.1e-62 244.2 250 60.4
PGR142G1544 Punica granatum HOM05D005135 ORTHO05D005810 2.4e-62 243.0 257 59.9
Rhsim09G0195100 Rhododendron simsii HOM05D000559 ORTHO05D005810 2.4e-62 243.0 228 64.9
Rhsim03G0174700 Rhododendron simsii HOM05D000559 ORTHO05D000596 5.4e-62 241.9 251 59.0
Hund04685 Selenicereus undatus HOM05D005135 ORTHO05D005810 5.4e-62 241.9 254 59.1
Aqoxy7G00498 Aquilegia oxysepala HOM05D005135 ORTHO05D005810 7.1e-62 241.5 252 60.3
Cc02_g03590 Coffea canephora HOM05D005135 ORTHO05D005810 1.9e-59 233.4 250 58.0
TPR.G17397 Trifolium pratense HOM05D005135 ORTHO05D005810 9.6e-59 231.1 224 60.3
BcaB08g35536 Brassica carinata HOM05D005135 ORTHO05D005810 2.8e-58 229.6 258 56.6
PSO478G0331 Papaver somniferum HOM05D005135 ORTHO05D005810 3.6e-58 229.2 257 55.6
Zm00001eb027200 Zea mays HOM05D005135 ORTHO05D005810 1.8e-57 226.9 252 56.0
Dinv28508 Davidia involucrata HOM05D005135 ORTHO05D005810 6.9e-57 224.9 154 79.2
FAN03G1115 Fragaria x ananassa HOM05D005135 ORTHO05D005810 6.9e-57 224.9 305 49.5
PGR042G3048 Punica granatum HOM05D005135 ORTHO05D005810 6.9e-57 224.9 154 81.2
Sp6g14090 Schrenkiella parvula HOM05D005135 ORTHO05D005810 6.9e-57 224.9 258 55.4
BcaB01g04154 Brassica carinata HOM05D005135 ORTHO05D005810 9.0e-57 224.6 255 55.3
CARHR264720 Cardamine hirsuta HOM05D005135 ORTHO05D005810 2.0e-56 223.4 257 55.6
Thhalv10014510m.g Eutrema salsugineum HOM05D005135 ORTHO05D005810 3.4e-56 222.6 258 57.4
Gohir.D04G141600 Gossypium hirsutum HOM05D005135 ORTHO05D005810 6.4e-55 218.4 158 75.3
Lsat_1_v5_gn_2_130120 Lactuca sativa HOM05D005135 ORTHO05D005810 2.4e-54 216.5 260 54.6
HPP92_001726 Vanilla planifolia HOM05D005135 ORTHO05D005810 2.4e-54 216.5 255 53.3
AT5G51840 Arabidopsis thaliana HOM05D005135 ORTHO05D005810 3.2e-54 216.1 257 55.6
HPP92_001719 Vanilla planifolia HOM05D005135 ORTHO05D005810 9.3e-54 214.5 255 52.9
vmacro06737 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 2.1e-53 213.4 374 42.8
Carub.0008s1186 Capsella rubella HOM05D005135 ORTHO05D005810 3.5e-53 212.6 257 54.1
AUR62016060 Chenopodium quinoa HOM05D005135 ORTHO05D005810 4.6e-53 212.2 274 51.1
AL8G26130 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 7.9e-53 211.5 259 54.1
Actinidia14214 Actinidia chinensis HOM05D005135 ORTHO05D005810 1.3e-52 210.7 190 67.9
Glyma.16G200500 Glycine max HOM05D005135 ORTHO05D005810 4.0e-49 199.1 257 52.1
DCAR_020208 Daucus carota HOM05D005135 ORTHO05D005810 2.2e-47 193.4 217 58.1
AagrBONN_evm.TU.Sc2ySwM_117.1266 Anthoceros agrestis HOM05D005135 ORTHO05D005810 1.2e-45 187.6 280 46.4
Mapoly0096s0072 Marchantia polymorpha HOM05D005135 ORTHO05D005810 1.3e-42 177.6 257 47.5
Phvul.004G123300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 1.4e-41 174.1 257 47.5
Lalb_Chr21g0304891 Lupinus albus HOM05D005135 ORTHO05D005810 1.8e-41 173.7 224 50.0
Potri.012G132832 Populus trichocarpa HOM05D005135 ORTHO05D005810 2.6e-40 169.9 182 57.7
Actinidia03096 Actinidia chinensis HOM05D005135 ORTHO05D005810 1.2e-37 161.0 197 55.8
PGSC0003DMG400024247 Solanum tuberosum HOM05D005135 ORTHO05D005810 4.6e-37 159.1 176 56.8
Haze_13791 Corylus avellana HOM05D005135 ORTHO05D005810 1.1e-35 154.5 271 45.8
Pp3c13_17710 Physcomitrium patens HOM05D005135 ORTHO05D005810 1.1e-35 154.5 279 40.9
Peaxi162Scf00192g00520 Petunia axillaris HOM05D005135 ORTHO05D005810 6.3e-34 148.7 207 50.7
Lj8A32T30 Lonicera japonica HOM05D005135 ORTHO05D005810 1.5e-32 144.1 182 52.7
Lj8C32T8 Lonicera japonica HOM05D005135 ORTHO05D005810 1.5e-32 144.1 97 79.4
CDE04G3520 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 5.0e-31 139.0 167 52.7
AL8G30000 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 6.5e-31 138.7 99 74.7
SHI13830 Sapria himalayana HOM05D005135 ORTHO05D005810 1.0e-28 131.3 126 60.3
Cre16.g661800 Chlamydomonas reinhardtii HOM05D005135 ORTHO05D005810 8.8e-20 101.7 123 47.2
Duzib205G1338 Durio zibethinus HOM05D005135 ORTHO05D005810 7.4e-19 98.6 132 47.0
Duzib205G1376 Durio zibethinus HOM05D005135 ORTHO05D005810 1.8e-17 94.0 99 52.5
Hund01499 Selenicereus undatus HOM05D000873 ORTHO05D005810 3.1e-17 93.2 104 54.8
SHI48584 Sapria himalayana HOM05D005135 ORTHO05D005810 5.9e-16 89.0 153 43.8
Os10g0188400 Oryza sativa ssp. japonica HOM05D005135 ORTHO05D005810 2.2e-15 87.0 82 65.9
Potri.012G132766 Populus trichocarpa HOM05D005135 ORTHO05D005810 4.2e-14 82.8 55 76.4
Cpa.g.sc4.198 Carica papaya HOM05D005135 ORTHO05D005810 7.9e-13 78.6 90 52.2
Hma1.2p1_3202F.1_g333920 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 1.0e-12 78.2 58 74.1
BcaC04g20628 Brassica carinata HOM05D005135 ORTHO05D005810 6.7e-12 75.5 230 35.7
TAR291G0007 Trochodendron aralioides HOM05D005135 ORTHO05D005810 1.5e-11 74.3 142 38.7
SEGI_16349 Sequoiadendron giganteum HOM05D056048 ORTHO05D005810 2.4e-09 67.0 169 32.5
SMO201G0013 Selaginella moellendorffii HOM05D005135 ORTHO05D005810 4.1e-09 66.2 64 59.4
Glyma.09G148800 Glycine max HOM05D005135 ORTHO05D005810 7.0e-09 65.5 94 47.9
CDE04G1613 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 2.6e-08 63.5 39 74.4


User provided reference genes

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