Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006818.2 Cucumis melo HOM05D006478 ORTHO05D008071 8.6e-88 327.0 173 100.0
CsaV3_3G016200 Cucumis sativus L. HOM05D006478 ORTHO05D008071 3.1e-85 318.5 173 96.5
ClCG02G008790 Citrullus lanatus HOM05D003975 ORTHO05D008071 2.4e-82 308.9 173 91.9
Sed0002492 Sechium edule HOM05D006478 ORTHO05D008071 9.3e-74 280.4 173 83.2
Cfa008204 Carpinus fangiana HOM05D006478 ORTHO05D008071 1.4e-50 203.4 173 63.0
QL09p018992 Quercus lobata HOM05D006478 ORTHO05D008071 1.9e-50 203.0 172 62.2
MD07G1255100 Malus domestica HOM05D006478 ORTHO05D008071 2.5e-50 202.6 173 61.3
CiPaw.04G061000 Carya illinoinensis HOM05D006478 ORTHO05D008071 2.7e-49 199.1 173 60.7
Prupe.2G278900 Prunus persica HOM05D006478 ORTHO05D008071 3.0e-48 195.7 173 60.7
Ciclev10006041m.g Citrus clementina HOM05D006478 ORTHO05D008071 6.3e-46 188.0 174 58.6
RcHm_v2.0_Chr4g0413311 Rosa chinensis HOM05D006478 ORTHO05D008071 8.2e-46 187.6 174 56.3
GSVIVG01018613001 Vitis vinifera HOM05D006478 ORTHO05D008071 1.1e-45 187.2 175 59.4
Dinv22954 Davidia involucrata HOM05D006478 ORTHO05D008071 1.8e-45 186.4 175 58.3
Atru.chr1.683 Acer truncatum HOM05D006478 ORTHO05D008071 5.3e-45 184.9 174 58.0
FAN17G1857 Fragaria x ananassa HOM05D006478 ORTHO05D008071 1.2e-44 183.7 173 54.9
FAN12G3923 Fragaria x ananassa HOM05D006478 ORTHO05D008071 1.0e-43 180.6 173 53.8
CANSAT56G4273 Cannabis sativa HOM05D006478 ORTHO05D008071 1.7e-43 179.9 173 52.6
Manes.14G035000 Manihot esculenta HOM05D006478 ORTHO05D008071 3.8e-43 178.7 171 56.7
FvH4_4g13180 Fragaria vesca HOM05D006478 ORTHO05D008071 1.9e-42 176.4 173 52.6
Dinv28557 Davidia involucrata HOM05D000120 ORTHO05D000068 4.2e-42 175.3 164 56.7
PGR042G2342 Punica granatum HOM05D006478 ORTHO05D008071 9.4e-42 174.1 173 54.3
CSS0007785 Camellia sinensis var. sinensis HOM05D006478 ORTHO05D008071 1.2e-41 173.7 179 53.6
Sabra12G0096300 Salix brachista HOM05D006478 ORTHO05D008071 1.6e-41 173.3 173 54.9
Actinidia31787 Actinidia chinensis HOM05D006478 ORTHO05D008071 2.1e-41 172.9 175 53.7
DCAR_018100 Daucus carota HOM05D006478 ORTHO05D008071 2.1e-41 172.9 173 52.6
Cc07_g16780 Coffea canephora HOM05D006478 ORTHO05D008071 4.6e-41 171.8 173 51.4
TWI23G1172 Tripterygium wilfordii HOM05D006478 ORTHO05D008071 1.0e-40 170.6 173 53.8
CSS0006490 Camellia sinensis var. sinensis HOM05D006478 ORTHO05D008071 1.8e-40 169.9 179 53.1
Potri.012G127100 Populus trichocarpa HOM05D006478 ORTHO05D008071 5.1e-40 168.3 173 53.2
MSTRG.8414 Avicennia marina HOM05D006478 ORTHO05D008071 6.7e-40 167.9 173 52.6
SalBow5G3546 Salvia bowleyana HOM05D006478 ORTHO05D008071 6.7e-40 167.9 173 52.6
SalBow5G4313 Salvia bowleyana HOM05D006478 ORTHO05D008071 6.7e-40 167.9 173 52.6
TAR629G1779 Trochodendron aralioides HOM05D006478 ORTHO05D008071 1.1e-39 167.2 183 51.9
DCAR_028724 Daucus carota HOM05D006478 ORTHO05D008071 5.7e-39 164.9 175 51.4
Nn6g34073 Nelumbo nucifera HOM05D006478 ORTHO05D008071 2.2e-38 162.9 178 50.0
CAN.G645.17 Capsicum annuum HOM05D006478 ORTHO05D008071 3.7e-38 162.2 173 50.3
Haze_13851 Corylus avellana HOM05D006478 ORTHO05D008071 4.8e-38 161.8 173 53.8
Migut.O00298 Erythranthe guttata HOM05D006478 ORTHO05D008071 4.8e-38 161.8 172 50.0
Eucgr.A02884 Eucalyptus grandis HOM05D006478 ORTHO05D008071 8.2e-38 161.0 173 50.9
Nitab4.5_0001383g0120 Nicotiana tabacum HOM05D006478 ORTHO05D008071 1.1e-37 160.6 173 50.9
Sopen11g002780 Solanum pennellii HOM05D006478 ORTHO05D008071 5.3e-37 158.3 173 49.7
HanXRQChr13g0420601 Helianthus annuus HOM05D006478 ORTHO05D008071 1.5e-36 156.8 173 48.6
AUR62015523 Chenopodium quinoa HOM05D006478 ORTHO05D008071 3.4e-36 155.6 175 49.7
PSO782G1599 Papaver somniferum HOM05D006478 ORTHO05D008071 3.4e-36 155.6 164 49.4
PSO170G1682 Papaver somniferum HOM05D006478 ORTHO05D008071 4.5e-36 155.2 164 49.4
SGA_v2.0_scaffold10G05491 Striga asiatica HOM05D006478 ORTHO05D008071 4.5e-36 155.2 173 48.0
Sc19g0001980 Simmondsia chinensis HOM05D006478 ORTHO05D008071 5.9e-36 154.8 175 48.6
Lsat_1_v5_gn_8_8920 Lactuca sativa HOM05D006478 ORTHO05D008071 7.7e-36 154.5 173 48.6
AUR62002188 Chenopodium quinoa HOM05D006478 ORTHO05D008071 5.0e-35 151.8 175 48.6
EL10Ac3g05828 Beta vulgaris HOM05D006478 ORTHO05D008071 6.5e-35 151.4 175 48.6
THA.LOC104811518 Tarenaya hassleriana HOM05D006478 ORTHO05D008071 8.5e-35 151.0 168 51.8
Hma1.2p1_0146F.1_g065730 Hydrangea macrophylla HOM05D006478 ORTHO05D008071 1.1e-34 150.6 184 50.0
Thhalv10014843m.g Eutrema salsugineum HOM05D006478 ORTHO05D008071 4.2e-34 148.7 173 50.3
Sp6g13670 Schrenkiella parvula HOM05D006478 ORTHO05D008071 5.5e-34 148.3 173 50.3
FAN07G1397 Fragaria x ananassa HOM05D006478 ORTHO05D008071 2.1e-33 146.4 149 50.3
Sed0011118 Sechium edule HOM05D006478 ORTHO05D008071 3.6e-33 145.6 173 52.6
AL8G25810 Arabidopsis lyrata HOM05D006478 ORTHO05D008071 7.9e-33 144.4 173 49.1
BcaB08g35507 Brassica carinata HOM05D006478 ORTHO05D008071 1.0e-32 144.1 174 48.3
Atru.chr12.858 Acer truncatum HOM05D006478 ORTHO05D008071 1.4e-32 143.7 124 62.9
Carub.0008s1155 Capsella rubella HOM05D006478 ORTHO05D008071 1.8e-32 143.3 173 48.6
AL64U10030 Arabidopsis lyrata HOM05D006478 ORTHO05D008071 2.3e-32 142.9 173 48.6
AT5G51510 Arabidopsis thaliana HOM05D006478 ORTHO05D008071 2.3e-32 142.9 173 48.0
CARHR264290 Cardamine hirsuta HOM05D006478 ORTHO05D008071 3.0e-32 142.5 173 49.1
ECA233G2919 Erigeron canadensis HOM05D006478 ORTHO05D008071 2.0e-31 139.8 173 44.5
Os10g0508600 Oryza sativa ssp. japonica HOM05D006478 ORTHO05D008071 3.3e-31 139.0 173 44.5
BcaC04g20665 Brassica carinata HOM05D006478 ORTHO05D008071 7.4e-31 137.9 174 47.7
A10p09440 Brassica napus HOM05D006478 ORTHO05D008071 7.4e-31 137.9 176 47.2
C09p40820 Brassica napus HOM05D006478 ORTHO05D008071 7.4e-31 137.9 174 47.7
BolC9t56962H Brassica oleracea HOM05D006478 ORTHO05D008071 7.4e-31 137.9 174 47.7
BraA10t43020Z Brassica rapa HOM05D006478 ORTHO05D008071 7.4e-31 137.9 176 47.2
arahy.Tifrunner.gnm1.ann1.R2ZWGQ Arachis hypogaea HOM05D006478 ORTHO05D008071 9.7e-31 137.5 181 44.2
vmacro09898 Vaccinium macrocarpon HOM05D006478 ORTHO05D008071 1.3e-30 137.1 166 47.0
Peaxi162Scf00241g00526 Petunia axillaris HOM05D006478 ORTHO05D008071 2.2e-30 136.3 134 55.2
Medtr3g075310 Medicago truncatula HOM05D006478 ORTHO05D008071 6.3e-30 134.8 180 43.9
TPR.G3657 Trifolium pratense HOM05D006478 ORTHO05D008071 5.3e-29 131.7 178 43.3
Psat2g100400 Pisum sativum HOM05D006478 ORTHO05D008071 1.5e-28 130.2 181 42.0
Psat3g066720 Pisum sativum HOM05D006478 ORTHO05D008071 2.0e-28 129.8 180 43.3
Lj6g0019546 Lotus japonicus HOM05D006478 ORTHO05D008071 4.5e-28 128.6 181 39.8
Duzib213G0671 Durio zibethinus HOM05D006478 ORTHO05D008071 7.7e-28 127.9 174 43.7
ECA247G1821 Erigeron canadensis HOM05D006478 ORTHO05D008071 7.7e-28 127.9 173 42.8
Thecc.07G184100 Theobroma cacao HOM05D006478 ORTHO05D008071 1.0e-27 127.5 174 43.1
Zm00001eb043910 Zea mays HOM05D006478 ORTHO05D008071 3.8e-27 125.6 171 41.5
Ca_03612_v3 Cicer arietinum L. HOM05D006478 ORTHO05D008071 6.5e-27 124.8 180 40.6
Glyma.18G235100 Glycine max HOM05D006478 ORTHO05D008071 8.5e-27 124.4 181 38.1
Gohir.A01G099000 Gossypium hirsutum HOM05D006478 ORTHO05D008071 8.5e-27 124.4 174 43.1
Gohir.D01G083500 Gossypium hirsutum HOM05D006478 ORTHO05D008071 1.1e-26 124.0 174 43.7
Gorai.002G109200 Gossypium raimondii HOM05D006478 ORTHO05D008071 1.1e-26 124.0 174 43.7
Phvul.011G177900 Phaseolus vulgaris HOM05D006478 ORTHO05D008071 2.5e-26 122.9 181 38.1
Lalb_Chr19g0140371 Lupinus albus HOM05D006478 ORTHO05D008071 3.2e-26 122.5 182 40.7
Glyma.09G257500 Glycine max HOM05D006478 ORTHO05D008071 5.5e-26 121.7 216 32.9
Aa31LG3G7930 Aethionema arabicum HOM05D006478 ORTHO05D008071 9.4e-26 120.9 203 41.4
arahy.Tifrunner.gnm1.ann1.LW4644 Arachis hypogaea HOM05D006478 ORTHO05D008071 3.6e-25 119.0 127 48.8
HPP92_021027 Vanilla planifolia HOM05D006478 ORTHO05D008071 3.6e-25 119.0 170 42.9
Hma1.2p1_0654F.1_g196670 Hydrangea macrophylla HOM05D006478 ORTHO05D008071 4.7e-25 118.6 180 40.0
CDE02G0477 Ceratophyllum demersum HOM05D006478 ORTHO05D008071 1.0e-24 117.5 123 47.2
PGSC0003DMG400023983 Solanum tuberosum HOM05D006478 ORTHO05D008071 1.4e-24 117.1 178 40.4
ATR0049G082 Amborella trichopoda HOM05D006478 ORTHO05D008071 1.3e-22 110.5 112 53.6
CAN.G1338.3 Capsicum annuum HOM05D006478 ORTHO05D008071 1.1e-21 107.5 128 44.5
CDE11G0941 Ceratophyllum demersum HOM05D006478 ORTHO05D008071 1.4e-21 107.1 114 47.4
Rhsim09G0192300 Rhododendron simsii HOM05D006478 ORTHO05D008071 1.4e-21 107.1 150 44.0
Aqoxy3G03162 Aquilegia oxysepala HOM05D006478 ORTHO05D008071 4.5e-20 102.1 170 33.5
Mapoly0022s0103 Marchantia polymorpha HOM05D006478 ORTHO05D008071 1.7e-19 100.1 174 33.9
RcHm_v2.0_Chr4g0409771 Rosa chinensis HOM05D006478 ORTHO05D008071 1.1e-18 97.4 106 47.2
Hund04605 Selenicereus undatus HOM05D006478 ORTHO05D008071 4.2e-18 95.5 138 42.8
unitig_8.g3700 Utricularia gibba HOM05D006478 ORTHO05D008071 1.2e-17 94.0 145 36.6
Solyc11g006880.3 Solanum lycopersicum HOM05D006478 ORTHO05D008071 1.0e-16 90.9 119 40.3
TAR125G0001 Trochodendron aralioides HOM05D006478 ORTHO05D008071 1.4e-16 90.5 165 38.2
Prupe.2G279400 Prunus persica HOM05D006478 ORTHO05D008071 2.0e-15 86.7 88 51.1
Manes.03G110816 Manihot esculenta HOM05D006478 ORTHO05D008071 1.2e-12 77.4 50 78.0
Oeu014948.1 Olea europaea HOM05D006478 ORTHO05D008071 1.6e-12 77.0 173 31.2
Pp3c3_28350 Physcomitrium patens HOM05D006478 ORTHO05D008071 2.0e-12 76.6 172 29.1
VMungo1127G0460 Vigna mungo HOM05D006478 ORTHO05D008071 2.7e-12 76.3 158 29.1
Lj1g0017005 Lotus japonicus HOM05D006478 ORTHO05D008071 2.5e-10 69.7 144 31.9
Ca_10075_v3 Cicer arietinum L. HOM05D006478 ORTHO05D008071 7.2e-10 68.2 49 67.3
CiPaw.05G217800 Carya illinoinensis HOM05D006478 ORTHO05D008071 1.6e-09 67.0 73 47.9
CBR_g39926 Chara braunii HOM05D006478 ORTHO05D008071 2.3e-08 63.2 185 29.2
HPP92_020994 Vanilla planifolia HOM05D006478 ORTHO05D008071 5.2e-08 62.0 111 33.3
Nitab4.5_0001780g0030 Nicotiana tabacum HOM05D006478 ORTHO05D008071 1.5e-07 60.5 69 40.6
Aqoxy3G03161 Aquilegia oxysepala HOM05D006478 ORTHO05D008071 4.4e-07 58.9 137 27.7
Medtr1g069420 Medicago truncatula HOM05D002356 ORTHO05D002546 2.2e-06 56.6 61 45.9
SHI13954 Sapria himalayana HOM05D006478 ORTHO05D008071 4.9e-06 55.5 42 66.7


User provided reference genes

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