Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006781.2 Cucumis melo HOM05D005839 ORTHO05D005686 0.0e+00 1964.5 1049 100.0
CsaV3_3G015820 Cucumis sativus L. HOM05D005839 ORTHO05D005686 0.0e+00 1667.5 1076 85.3
ClCG05G007080 Citrullus lanatus HOM05D005839 ORTHO05D005686 0.0e+00 1393.6 1100 73.0
Sed0009973 Sechium edule HOM05D005839 ORTHO05D005686 0.0e+00 1079.7 1097 59.4
Sed0018641 Sechium edule HOM05D005839 ORTHO05D005686 3.9e-292 1008.4 1096 58.6
CiPaw.01G113800 Carya illinoinensis HOM05D005839 ORTHO05D005686 1.6e-104 385.2 1256 30.7
QL06p027171 Quercus lobata HOM05D005839 ORTHO05D005686 1.1e-103 382.5 1145 31.4
Haze_11680 Corylus avellana HOM05D005839 ORTHO05D005686 2.9e-101 374.4 1204 30.3
MD04G1021500 Malus domestica HOM05D005839 ORTHO05D005686 1.6e-99 368.6 1102 31.1
Thecc.04G191800 Theobroma cacao HOM05D005839 ORTHO05D005686 2.3e-95 354.8 1124 31.0
Manes.05G199100 Manihot esculenta HOM05D005839 ORTHO05D005686 1.8e-87 328.6 1112 31.2
Prupe.1G170500 Prunus persica HOM05D005839 ORTHO05D005686 2.2e-85 321.6 1130 31.0
Peaxi162Scf00286g00911 Petunia axillaris HOM05D005839 ORTHO05D005686 2.5e-81 308.1 1104 28.4
Eucgr.H02631 Eucalyptus grandis HOM05D005839 ORTHO05D005686 1.6e-80 305.4 1130 28.7
Potri.014G146200 Populus trichocarpa HOM05D005839 ORTHO05D005686 4.7e-80 303.9 1216 27.2
Actinidia28516 Actinidia chinensis HOM05D005839 ORTHO05D005686 1.4e-79 302.4 1094 26.9
Glyma.05G150200 Glycine max HOM05D005839 ORTHO05D005686 2.4e-79 301.6 1156 28.5
Ciclev10004236m.g Citrus clementina HOM05D005839 ORTHO05D005686 3.1e-79 301.2 1129 29.5
Sabra14G0109900 Salix brachista HOM05D005839 ORTHO05D005686 6.4e-77 293.5 1199 27.3
FAN12G3285 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.1e-76 292.7 1253 29.1
COL.COLO4_04260 Corchorus olitorius HOM05D005839 ORTHO05D005686 3.2e-76 291.2 1070 30.4
VMungo0251G1575 Vigna mungo HOM05D005839 ORTHO05D005686 4.2e-76 290.8 1173 29.1
FvH4_4g12870 Fragaria vesca HOM05D005839 ORTHO05D005686 2.7e-75 288.1 1252 29.1
Cc03_g09160 Coffea canephora HOM05D005839 ORTHO05D005686 4.6e-75 287.3 1127 27.7
Phvul.003G048600 Phaseolus vulgaris HOM05D005839 ORTHO05D005686 7.8e-75 286.6 1173 28.2
Sopen09g035450 Solanum pennellii HOM05D005839 ORTHO05D005686 1.7e-74 285.4 1103 29.0
arahy.Tifrunner.gnm1.ann1.3YD71H Arachis hypogaea HOM05D005839 ORTHO05D005686 3.0e-74 284.6 1184 27.4
Potri.002G235900 Populus trichocarpa HOM05D005839 ORTHO05D005686 1.1e-73 282.7 1097 28.7
Solyc09g092550.4 Solanum lycopersicum HOM05D005839 ORTHO05D005686 5.6e-73 280.4 1118 29.1
arahy.Tifrunner.gnm1.ann1.SAUI5N Arachis hypogaea HOM05D005839 ORTHO05D005686 1.3e-72 279.3 1185 28.8
Duzib268G0552 Durio zibethinus HOM05D005839 ORTHO05D005686 6.2e-72 276.9 1157 28.6
PGSC0003DMG401021870 Solanum tuberosum HOM05D005839 ORTHO05D005686 6.2e-72 276.9 1076 29.0
CANSAT78G1593 Cannabis sativa HOM05D005839 ORTHO05D005686 2.4e-71 275.0 1090 29.4
CAN.G1684.4 Capsicum annuum HOM05D005839 ORTHO05D005686 9.0e-71 273.1 1076 28.0
Sabra02G0179700 Salix brachista HOM05D005839 ORTHO05D005686 9.0e-71 273.1 1102 27.9
TAR636G0994 Trochodendron aralioides HOM05D005839 ORTHO05D005686 2.6e-70 271.6 1125 28.5
Nitab4.5_0000037g0160 Nicotiana tabacum HOM05D005839 ORTHO05D005686 5.8e-70 270.4 1081 27.3
TAR636G1565 Trochodendron aralioides HOM05D005839 ORTHO05D005686 9.9e-70 269.6 1135 27.9
Duzib151G0277 Durio zibethinus HOM05D005839 ORTHO05D005686 1.4e-68 265.8 417 43.6
TWI53G2144 Tripterygium wilfordii HOM05D005839 ORTHO05D005686 1.2e-67 262.7 1092 27.3
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 2.7e-67 261.5 1308 27.2
Actinidia35832 Actinidia chinensis HOM05D005839 ORTHO05D005686 7.9e-67 260.0 731 30.8
RcHm_v2.0_Chr4g0412531 Rosa chinensis HOM05D005839 ORTHO05D005686 7.9e-67 260.0 1354 25.5
Lj4g0005413 Lotus japonicus HOM05D005839 ORTHO05D005686 2.3e-66 258.5 1181 28.8
Glyma.08G107100 Glycine max HOM05D005839 ORTHO05D005686 1.1e-65 256.1 1130 26.9
Medtr8g081010 Medicago truncatula HOM05D005839 ORTHO05D005686 6.2e-64 250.4 1084 28.8
CSS0003065 Camellia sinensis var. sinensis HOM05D005839 ORTHO05D005686 8.4e-61 240.0 1074 26.7
Ca_18007_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 3.2e-60 238.0 1112 27.7
Gohir.A10G130200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 9.3e-60 236.5 1093 28.2
PGR083G0592 Punica granatum HOM05D005839 ORTHO05D005686 1.8e-58 232.3 1126 27.2
GSVIVG01031570001 Vitis vinifera HOM05D005839 ORTHO05D005686 2.5e-57 228.4 1086 25.6
PGSC0003DMG400021878 Solanum tuberosum HOM05D005839 ORTHO05D005686 1.5e-54 219.2 275 46.9
TPR.G11806 Trifolium pratense HOM05D004269 ORTHO05D007106 1.5e-54 219.2 1081 25.4
Oeu049072.1 Olea europaea HOM05D005839 ORTHO05D005686 2.0e-54 218.8 1082 26.9
Gohir.D10G136100 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.7e-53 215.7 1083 26.3
Cpa.g.sc157.17 Carica papaya HOM05D005839 ORTHO05D005686 6.5e-53 213.8 303 44.6
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.4e-52 212.6 442 36.9
Gorai.011G150900 Gossypium raimondii HOM05D005839 ORTHO05D005686 1.4e-52 212.6 1089 26.7
FAN22G0032 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.9e-52 212.2 415 38.3
Gorai.006G225000 Gossypium raimondii HOM05D005839 ORTHO05D005686 3.5e-51 208.0 1081 26.9
Gohir.D09G201300 Gossypium hirsutum HOM05D005839 ORTHO05D005686 1.8e-50 205.7 1074 26.4
Gorai.005G128100 Gossypium raimondii HOM05D005839 ORTHO05D005686 1.5e-49 202.6 257 48.6
Lj3A356G9 Lonicera japonica HOM05D005839 ORTHO05D005686 5.7e-49 200.7 529 33.3
Dinv32166 Davidia involucrata HOM05D005839 ORTHO05D005686 1.6e-48 199.1 571 32.7
Hund24442 Selenicereus undatus HOM05D005839 ORTHO05D005686 8.2e-48 196.8 1092 25.5
Ah.04g149590 Amaranthus hybridus HOM05D005839 ORTHO05D005686 1.4e-47 196.1 1108 26.0
SalBow2G2330 Salvia bowleyana HOM05D005839 ORTHO05D005686 9.0e-47 193.4 1128 27.2
Lj3A375G30 Lonicera japonica HOM05D005839 ORTHO05D005686 2.0e-46 192.2 517 33.8
SalBow2G2888 Salvia bowleyana HOM05D005839 ORTHO05D005686 2.0e-46 192.2 1128 27.1
Gohir.D02G113200 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.6e-46 191.8 687 29.4
MSTRG.4261 Avicennia marina HOM05D005839 ORTHO05D005686 4.5e-46 191.0 1113 25.0
Hma1.2p1_0984F.1_g244280 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 1.7e-45 189.1 514 32.5
Atru.chr3.1776 Acer truncatum HOM05D005839 ORTHO05D005686 7.2e-44 183.7 919 25.6
TAR365G0636 Trochodendron aralioides HOM05D005839 ORTHO05D005686 3.6e-43 181.4 496 33.9
Psat7g076360 Pisum sativum HOM05D005839 ORTHO05D005686 1.8e-42 179.1 261 44.8
arahy.Tifrunner.gnm1.ann1.SDG4EV Arachis hypogaea HOM05D005839 ORTHO05D005686 2.3e-42 178.7 231 46.8
AUR62018535 Chenopodium quinoa HOM05D005839 ORTHO05D005686 2.0e-41 175.6 1122 25.2
Gohir.A09G207800 Gossypium hirsutum HOM05D005839 ORTHO05D005686 2.8e-40 171.8 1089 25.4
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 4.8e-40 171.0 222 44.6
Gohir.A03G095700 Gossypium hirsutum HOM05D005839 ORTHO05D005686 8.2e-40 170.2 236 44.1
arahy.Tifrunner.gnm1.ann1.62570H Arachis hypogaea HOM05D005839 ORTHO05D005686 4.1e-39 167.9 1084 25.7
Hma1.2p1_1457F.1_g284680 Hydrangea macrophylla HOM05D005839 ORTHO05D005686 9.1e-39 166.8 383 35.0
ATR1147G004 Amborella trichopoda HOM05D005839 ORTHO05D005686 1.2e-38 166.4 1234 24.1
DCAR_005282 Daucus carota HOM05D005839 ORTHO05D005686 7.7e-38 163.7 718 28.3
Atru.chr3.1775 Acer truncatum HOM05D005839 ORTHO05D005686 4.2e-36 157.9 171 55.0
arahy.Tifrunner.gnm1.ann1.H8QNW8 Arachis hypogaea HOM05D005839 ORTHO05D005686 4.7e-35 154.5 1082 25.5
AUR62020882 Chenopodium quinoa HOM05D005839 ORTHO05D005686 1.8e-34 152.5 1132 23.0
Lj6g0025267 Lotus japonicus HOM05D005839 ORTHO05D005686 2.2e-32 145.6 217 42.9
ECA233G5455 Erigeron canadensis HOM05D005839 ORTHO05D005686 2.8e-32 145.2 236 42.8
EL10Ac3g07436 Beta vulgaris HOM05D005839 ORTHO05D005686 3.7e-32 144.8 1085 24.7
MSTRG.9771 Avicennia marina HOM05D005839 ORTHO05D005686 1.3e-29 136.3 399 30.8
HanXRQChr07g0186001 Helianthus annuus HOM05D005839 ORTHO05D005686 1.3e-24 119.8 231 36.8
Lalb_Chr07g0186981 Lupinus albus HOM05D005839 ORTHO05D005686 1.3e-24 119.8 222 37.4
Aqoxy2G04047 Aquilegia oxysepala HOM05D005839 ORTHO05D005686 1.7e-24 119.4 1089 22.6
Duzib151G0492 Durio zibethinus HOM05D005839 ORTHO05D005686 3.7e-24 118.2 159 44.7
Lsat_1_v5_gn_6_58881 Lactuca sativa HOM05D005839 ORTHO05D005686 2.4e-23 115.5 235 37.4
Migut.G00951 Erythranthe guttata HOM05D005839 ORTHO05D005686 1.2e-22 113.2 242 36.0
Sc13g0000540 Simmondsia chinensis HOM05D005839 ORTHO05D005686 2.6e-22 112.1 717 25.7
arahy.Tifrunner.gnm1.ann1.98ICAR Arachis hypogaea HOM05D000340 ORTHO05D000821 5.9e-22 110.9 131 49.6
arahy.Tifrunner.gnm1.ann1.52QBHW Arachis hypogaea HOM05D005839 ORTHO05D005686 7.7e-22 110.5 170 40.6
Lalb_Chr12g0205781 Lupinus albus HOM05D005839 ORTHO05D005686 7.7e-22 110.5 198 40.4
HanXRQChr02g0058441 Helianthus annuus HOM05D005839 ORTHO05D005686 2.2e-21 109.0 261 31.8
Hund19024 Selenicereus undatus HOM05D005839 ORTHO05D005686 3.2e-20 105.1 207 37.7
Nn8g41260 Nelumbo nucifera HOM05D005839 ORTHO05D005686 7.2e-20 104.0 244 34.4
THA.LOC104808672 Tarenaya hassleriana HOM05D010750 ORTHO05D005686 4.0e-18 98.2 115 49.6
arahy.Tifrunner.gnm1.ann1.Q2NVSC Arachis hypogaea HOM05D005839 ORTHO05D000011 1.2e-17 96.7 96 53.1
BcaNung05575 Brassica carinata HOM05D010750 ORTHO05D005686 1.5e-17 96.3 117 43.6
ECA238G4483 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.6e-17 95.5 238 35.7
Ca_16430_v3 Cicer arietinum L. HOM05D005839 ORTHO05D005686 9.7e-17 93.6 241 32.4
FvH4_1g13820 Fragaria vesca HOM05D005839 ORTHO05D005686 1.3e-16 93.2 56 67.9
Cpa.g.sc157.15 Carica papaya HOM05D005839 ORTHO05D005686 1.7e-16 92.8 121 43.8
Cpa.g.sc157.18 Carica papaya HOM05D005839 ORTHO05D005686 1.7e-16 92.8 121 44.6
CARHR220270 Cardamine hirsuta HOM05D010750 ORTHO05D005686 2.2e-16 92.4 190 34.2
PSO017G5422 Papaver somniferum HOM05D037519 ORTHO05D037279 4.8e-16 91.3 1056 22.4
Sp7g12060 Schrenkiella parvula HOM05D010750 ORTHO05D005686 4.8e-16 91.3 123 39.8
Lsat_1_v5_gn_2_47881 Lactuca sativa HOM05D005839 ORTHO05D005686 8.3e-16 90.5 115 45.2
A04p07940 Brassica napus HOM05D010750 ORTHO05D005686 1.1e-15 90.1 99 45.5
Thhalv10024466m.g Eutrema salsugineum HOM05D010750 ORTHO05D005686 1.4e-15 89.7 107 44.9
BraA08t34382Z Brassica rapa HOM05D010750 ORTHO05D005686 2.4e-15 89.0 100 50.0
BcaC01g00210 Brassica carinata HOM05D010750 ORTHO05D005686 7.0e-15 87.4 157 37.6
BolC3t19949H Brassica oleracea HOM05D010750 ORTHO05D005686 1.2e-14 86.7 180 35.0
ECA233G2442 Erigeron canadensis HOM05D005839 ORTHO05D005686 1.2e-14 86.7 191 33.0
BraA04t16484Z Brassica rapa HOM05D010750 ORTHO05D005686 1.6e-14 86.3 98 45.9
Aa31LG9G3190 Aethionema arabicum HOM05D010750 ORTHO05D005686 3.5e-14 85.1 153 35.9
PSO063G0130 Papaver somniferum HOM05D037519 ORTHO05D037279 3.5e-14 85.1 1063 23.0
BcaC02g09348 Brassica carinata HOM05D010750 ORTHO05D005686 5.9e-14 84.3 110 40.0
C04p41620 Brassica napus HOM05D010750 ORTHO05D005686 5.9e-14 84.3 110 40.0
arahy.Tifrunner.gnm1.ann1.CIA2YT Arachis hypogaea HOM05D005839 ORTHO05D005686 2.2e-13 82.4 37 83.8
A08p24270 Brassica napus HOM05D010750 ORTHO05D005686 2.2e-13 82.4 181 35.4
Carub.0007s2819 Capsella rubella HOM05D010750 ORTHO05D005686 2.2e-13 82.4 96 42.7
BolC4t25741H Brassica oleracea HOM05D010750 ORTHO05D005686 2.9e-13 82.0 111 39.6
C03p76940 Brassica napus HOM05D010750 ORTHO05D005686 5.0e-13 81.3 178 33.1
CDE05G0606 Ceratophyllum demersum HOM05D062397 ORTHO05D043856 2.5e-12 79.0 178 31.5
AT4G14200 Arabidopsis thaliana HOM05D010750 ORTHO05D005686 7.2e-12 77.4 102 41.2
Nn1g08130 Nelumbo nucifera HOM05D005839 ORTHO05D005686 1.6e-11 76.3 95 42.1
SEGI_24376 Sequoiadendron giganteum HOM05D005839 ORTHO05D005686 5.2e-10 71.2 42 61.9
Lalb_Chr12g0205771 Lupinus albus HOM05D005839 ORTHO05D005686 2.6e-09 68.9 55 56.4
QL06p027203 Quercus lobata HOM05D034196 ORTHO05D005686 2.6e-09 68.9 36 75.0
AL7G42170 Arabidopsis lyrata HOM05D010750 ORTHO05D005686 9.8e-09 67.0 114 36.8
Lalb_Chr07g0186961 Lupinus albus HOM05D005839 ORTHO05D005686 3.7e-08 65.1 161 29.8
Glyma.18G003300 Glycine max HOM05D005839 ORTHO05D005686 4.8e-08 64.7 112 34.8
Glyma.11G253800 Glycine max HOM05D005839 ORTHO05D005686 1.1e-07 63.5 87 43.7
Mapoly0008s0012 Marchantia polymorpha HOM05D005839 ORTHO05D005686 9.1e-07 60.5 44 52.3
Actinidia04544 Actinidia chinensis HOM05D005839 ORTHO05D005686 2.0e-06 59.3 70 48.6
Mapoly0034s0131 Marchantia polymorpha HOM05D005839 ORTHO05D005686 2.0e-06 59.3 53 47.2
SMO153G0001 Selaginella moellendorffii HOM05D005839 ORTHO05D005686 2.0e-06 59.3 70 35.7
Os08g0525700 Oryza sativa ssp. japonica HOM05D020277 ORTHO05D023046 4.5e-06 58.2 116 31.0
Mapoly0059s0004 Marchantia polymorpha HOM05D005839 ORTHO05D005686 5.9e-06 57.8 68 41.2


User provided reference genes

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