Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006751.2 Cucumis melo HOM05D003268 ORTHO05D003719 6.2e-126 454.1 230 100.0
CsaV3_3G015530 Cucumis sativus L. HOM05D003268 ORTHO05D003719 1.1e-103 380.2 231 85.3
Sed0010166 Sechium edule HOM05D003268 ORTHO05D003719 2.8e-78 295.8 209 73.7
Sed0001415 Sechium edule HOM05D003268 ORTHO05D003719 5.2e-40 168.7 194 49.0
Manes.11G020800 Manihot esculenta HOM05D003268 ORTHO05D003719 3.2e-37 159.5 184 48.9
Duzib212G0032 Durio zibethinus HOM05D003268 ORTHO05D003719 1.7e-35 153.7 190 44.2
PGR031G0843 Punica granatum HOM05D003268 ORTHO05D003719 3.0e-35 152.9 218 43.6
Thecc.04G313000 Theobroma cacao HOM05D003268 ORTHO05D003719 3.0e-35 152.9 192 44.3
QL06p014213 Quercus lobata HOM05D003268 ORTHO05D003719 8.6e-35 151.4 188 45.7
COL.COLO4_34517 Corchorus olitorius HOM05D003268 ORTHO05D003719 3.3e-34 149.4 184 45.1
Cpa.g.sc53.77 Carica papaya HOM05D003268 ORTHO05D003719 9.5e-34 147.9 182 47.3
TAR636G0250 Trochodendron aralioides HOM05D003268 ORTHO05D003719 1.1e-32 144.4 198 42.4
Gohir.D02G064200 Gossypium hirsutum HOM05D003268 ORTHO05D003719 2.4e-32 143.3 214 39.3
Gorai.005G072500 Gossypium raimondii HOM05D003268 ORTHO05D003719 2.4e-32 143.3 214 39.3
Dinv29508 Davidia involucrata HOM05D003268 ORTHO05D003719 4.4e-31 139.0 199 42.7
Atru.chr4.3150 Acer truncatum HOM05D003268 ORTHO05D003719 9.9e-31 137.9 197 40.6
Gohir.A02G058400 Gossypium hirsutum HOM05D003268 ORTHO05D003719 9.9e-31 137.9 214 38.3
TAR362G1252 Trochodendron aralioides HOM05D003268 ORTHO05D003719 9.9e-31 137.9 189 41.3
TWI09G0361 Tripterygium wilfordii HOM05D003268 ORTHO05D003719 1.3e-30 137.5 181 43.6
SalBow5G1243 Salvia bowleyana HOM05D003268 ORTHO05D003719 1.7e-30 137.1 171 43.9
TAR633G0292 Trochodendron aralioides HOM05D003268 ORTHO05D003719 3.8e-30 136.0 186 39.2
Ciclev10005819m.g Citrus clementina HOM05D003268 ORTHO05D003719 1.1e-29 134.4 196 41.8
Glyma.13G118100 Glycine max HOM05D003268 ORTHO05D003719 1.1e-29 134.4 210 39.5
Lalb_Chr07g0181591 Lupinus albus HOM05D003268 ORTHO05D003719 3.2e-29 132.9 190 41.6
Lalb_Chr13g0299031 Lupinus albus HOM05D003268 ORTHO05D003719 3.2e-29 132.9 200 40.0
VMungo1215G0793 Vigna mungo HOM05D003268 ORTHO05D003719 3.2e-29 132.9 206 42.7
Sabra10G0001700 Salix brachista HOM05D003268 ORTHO05D003719 4.2e-29 132.5 183 43.7
MSTRG.20352 Avicennia marina HOM05D003268 ORTHO05D003719 5.4e-29 132.1 198 41.4
Lj6P701T18 Lonicera japonica HOM05D003268 ORTHO05D003719 5.4e-29 132.1 184 43.5
Potri.010G002200 Populus trichocarpa HOM05D003268 ORTHO05D003719 1.2e-28 131.0 192 41.7
Cc02_g35810 Coffea canephora HOM05D003268 ORTHO05D003719 1.6e-28 130.6 199 40.2
Oeu020279.1 Olea europaea HOM05D003268 ORTHO05D003719 1.6e-28 130.6 192 39.6
Oeu034985.1 Olea europaea HOM05D003268 ORTHO05D003719 2.7e-28 129.8 192 38.5
Glyma.17G041900 Glycine max HOM05D003268 ORTHO05D003719 3.5e-28 129.4 212 40.1
Aqoxy2G02513 Aquilegia oxysepala HOM05D003268 ORTHO05D003719 1.7e-27 127.1 182 40.7
CAN.G1248.20 Capsicum annuum HOM05D003268 ORTHO05D003719 1.7e-27 127.1 195 41.0
PGSC0003DMG400044126 Solanum tuberosum HOM05D003268 ORTHO05D003719 1.7e-27 127.1 183 42.6
Phvul.003G123200 Phaseolus vulgaris HOM05D003268 ORTHO05D003719 3.0e-27 126.3 203 40.4
CiPaw.01G129300 Carya illinoinensis HOM05D003268 ORTHO05D003719 5.1e-27 125.6 186 43.0
Haze_00767 Corylus avellana HOM05D003268 ORTHO05D003719 5.1e-27 125.6 179 40.2
Dinv30944 Davidia involucrata HOM05D003268 ORTHO05D003719 5.1e-27 125.6 179 40.2
PSO761G0464 Papaver somniferum HOM05D003268 ORTHO05D003719 1.1e-26 124.4 195 37.9
RcHm_v2.0_Chr4g0427521 Rosa chinensis HOM05D003268 ORTHO05D003719 1.1e-26 124.4 201 39.3
PSO210G7784 Papaver somniferum HOM05D003268 ORTHO05D003719 1.5e-26 124.0 195 37.9
Solyc01g101160.2 Solanum lycopersicum HOM05D003268 ORTHO05D003719 3.3e-26 122.9 184 41.3
Sopen01g044640 Solanum pennellii HOM05D003268 ORTHO05D003719 3.3e-26 122.9 184 41.3
Nitab4.5_0002485g0060 Nicotiana tabacum HOM05D003268 ORTHO05D003719 7.3e-26 121.7 182 39.0
THA.LOC104821812 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 7.3e-26 121.7 169 42.6
Nitab4.5_0005904g0060 Nicotiana tabacum HOM05D003268 ORTHO05D003719 1.3e-25 120.9 183 38.3
Oeu023377.1 Olea europaea HOM05D003268 ORTHO05D003719 1.3e-25 120.9 197 38.1
Oeu023379.1 Olea europaea HOM05D003268 ORTHO05D003719 1.6e-25 120.6 197 38.1
PSO170G4270 Papaver somniferum HOM05D003268 ORTHO05D003719 1.6e-25 120.6 203 40.4
SHI00050 Sapria himalayana HOM05D002272 ORTHO05D005405 1.6e-25 120.6 206 39.8
Oeu016542.1 Olea europaea HOM05D003268 ORTHO05D003719 2.1e-25 120.2 195 38.5
CSS0047817 Camellia sinensis var. sinensis HOM05D003268 ORTHO05D003719 2.8e-25 119.8 203 36.5
MBI19_g47476_MAGBIO Magnolia biondii HOM05D003268 ORTHO05D003719 1.4e-24 117.5 180 41.1
COL.COLO4_05489 Corchorus olitorius HOM05D003268 ORTHO05D003719 1.8e-24 117.1 190 38.4
Sed0007403 Sechium edule HOM05D003268 ORTHO05D003719 1.8e-24 117.1 218 34.9
Sc16g0009390 Simmondsia chinensis HOM05D003268 ORTHO05D003719 1.8e-24 117.1 173 39.3
Lj4g0025064 Lotus japonicus HOM05D003268 ORTHO05D003719 2.4e-24 116.7 194 40.7
MD16G1136300 Malus domestica HOM05D003268 ORTHO05D003719 2.4e-24 116.7 182 40.7
Prupe.1G105300 Prunus persica HOM05D003268 ORTHO05D003719 5.3e-24 115.5 200 40.5
vmacro01600 Vaccinium macrocarpon HOM05D003268 ORTHO05D003719 5.3e-24 115.5 207 35.7
MELO3C015242.2 Cucumis melo HOM05D003268 ORTHO05D003719 6.9e-24 115.2 177 39.0
CsaV3_1G038030 Cucumis sativus L. HOM05D003268 ORTHO05D003719 9.0e-24 114.8 200 35.5
Manes.08G107700 Manihot esculenta HOM05D003268 ORTHO05D003719 9.0e-24 114.8 207 35.7
Cpa.g.sc48.222 Carica papaya HOM05D003268 ORTHO05D003719 1.5e-23 114.0 218 33.5
ClCG03G017870 Citrullus lanatus HOM05D003268 ORTHO05D003719 2.0e-23 113.6 193 36.8
Aa31LG8G4410 Aethionema arabicum HOM05D002272 ORTHO05D005405 3.4e-23 112.8 201 39.3
Ca_21366_v3 Cicer arietinum L. HOM05D003268 ORTHO05D003719 3.4e-23 112.8 180 37.2
Lj5P319T26 Lonicera japonica HOM05D003268 ORTHO05D003719 3.4e-23 112.8 192 38.5
Psat0s1206g0240 Pisum sativum HOM05D003268 ORTHO05D003719 4.4e-23 112.5 202 35.1
Aa31LG1G5560 Aethionema arabicum HOM05D003268 ORTHO05D003719 9.9e-23 111.3 188 35.1
MD13G1139400 Malus domestica HOM05D003268 ORTHO05D003719 1.3e-22 110.9 201 37.8
TPR.G12613 Trifolium pratense HOM05D003268 ORTHO05D003719 1.3e-22 110.9 200 35.0
Medtr4g124100 Medicago truncatula HOM05D003268 ORTHO05D003719 1.7e-22 110.5 180 37.8
MSTRG.16427 Avicennia marina HOM05D003268 ORTHO05D003719 2.2e-22 110.2 184 38.0
Thhalv10008580m.g Eutrema salsugineum HOM05D003268 ORTHO05D003719 2.9e-22 109.8 213 35.7
Actinidia11688 Actinidia chinensis HOM05D003268 ORTHO05D003719 3.8e-22 109.4 190 35.8
CiPaw.07G035600 Carya illinoinensis HOM05D003268 ORTHO05D003719 3.8e-22 109.4 206 36.9
TWI56G0501 Tripterygium wilfordii HOM05D003268 ORTHO05D003719 6.4e-22 108.6 185 39.5
Sabra08G0150300 Salix brachista HOM05D003268 ORTHO05D003719 8.4e-22 108.2 146 42.5
Solyc03g114270.1 Solanum lycopersicum HOM05D003268 ORTHO05D003719 8.4e-22 108.2 180 38.3
Sopen03g033360 Solanum pennellii HOM05D003268 ORTHO05D003796 8.4e-22 108.2 180 38.3
Potri.008G206600 Populus trichocarpa HOM05D003268 ORTHO05D003719 1.1e-21 107.8 146 43.2
RcHm_v2.0_Chr3g0458411 Rosa chinensis HOM05D003268 ORTHO05D003719 1.4e-21 107.5 185 37.8
PGSC0003DMG400024495 Solanum tuberosum HOM05D003268 ORTHO05D003719 3.2e-21 106.3 212 34.0
unitig_8.g4507 Utricularia gibba HOM05D003268 ORTHO05D003719 3.2e-21 106.3 220 36.4
SalBow4G1159 Salvia bowleyana HOM05D003268 ORTHO05D003719 4.2e-21 105.9 183 38.8
CANSAT54G2527 Cannabis sativa HOM05D003268 ORTHO05D003719 5.4e-21 105.5 221 32.6
AT1G09520 Arabidopsis thaliana HOM05D003268 ORTHO05D003719 7.1e-21 105.1 188 35.6
Rhsim11G0103200 Rhododendron simsii HOM05D003268 ORTHO05D003719 9.3e-21 104.8 207 35.7
SGA_v2.0_scaffold22G09705 Striga asiatica HOM05D003268 ORTHO05D003719 1.6e-20 104.0 182 36.3
Duzib128G0788 Durio zibethinus HOM05D003268 ORTHO05D003719 2.7e-20 103.2 200 35.5
Hma1.2p1_0759F.1_g213940 Hydrangea macrophylla HOM05D003268 ORTHO05D003719 4.6e-20 102.4 181 37.0
Carub.0001s0886 Capsella rubella HOM05D003268 ORTHO05D003719 6.0e-20 102.1 190 35.3
Sp1g08120 Schrenkiella parvula HOM05D003268 ORTHO05D003719 6.0e-20 102.1 204 35.8
THA.LOC104816841 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 7.8e-20 101.7 178 35.4
Nitab4.5_0001808g0030 Nicotiana tabacum HOM05D003268 ORTHO05D003719 1.0e-19 101.3 189 35.4
BcaC09g48702 Brassica carinata HOM05D003268 ORTHO05D003719 1.3e-19 100.9 198 35.4
C01p46780 Brassica napus HOM05D003268 ORTHO05D003719 1.3e-19 100.9 198 35.4
BolC1t04651H Brassica oleracea HOM05D003268 ORTHO05D003719 1.3e-19 100.9 198 35.4
CARHR009490 Cardamine hirsuta HOM05D003268 ORTHO05D003719 1.3e-19 100.9 185 35.1
Haze_03993 Corylus avellana HOM05D003268 ORTHO05D003719 1.3e-19 100.9 200 36.5
FvH4_6g08440 Fragaria vesca HOM05D003268 ORTHO05D003719 1.3e-19 100.9 205 38.0
FAN14G0797 Fragaria x ananassa HOM05D003268 ORTHO05D003719 1.3e-19 100.9 205 38.0
Medtr1g484850 Medicago truncatula HOM05D003268 ORTHO05D003719 1.3e-19 100.9 208 33.2
Sp3g15630 Schrenkiella parvula HOM05D003268 ORTHO05D003719 1.7e-19 100.5 206 35.4
Ca_10197_v3 Cicer arietinum L. HOM05D003268 ORTHO05D003719 2.3e-19 100.1 203 32.0
Migut.B00893 Erythranthe guttata HOM05D003268 ORTHO05D003719 3.0e-19 99.8 196 34.2
AL1G20040 Arabidopsis lyrata HOM05D003268 ORTHO05D003719 3.9e-19 99.4 189 33.9
Cfa015729 Carpinus fangiana HOM05D003268 ORTHO05D003719 5.1e-19 99.0 179 35.2
Thhalv10022081m.g Eutrema salsugineum HOM05D003268 ORTHO05D003719 5.1e-19 99.0 202 35.6
Gohir.A13G177600 Gossypium hirsutum HOM05D003268 ORTHO05D003719 5.1e-19 99.0 177 36.2
Thecc.05G329300 Theobroma cacao HOM05D003268 ORTHO05D003719 5.1e-19 99.0 205 33.7
BcaC09g48706 Brassica carinata HOM05D003268 ORTHO05D003719 6.6e-19 98.6 186 37.1
C05p07520 Brassica napus HOM05D003268 ORTHO05D003719 6.6e-19 98.6 198 34.8
BolC1t04640H Brassica oleracea HOM05D003268 ORTHO05D003719 6.6e-19 98.6 186 37.1
BolC5t29506H Brassica oleracea HOM05D003268 ORTHO05D003719 6.6e-19 98.6 198 34.8
Nitab4.5_0000039g0190 Nicotiana tabacum HOM05D003268 ORTHO05D003719 6.6e-19 98.6 193 34.2
THA.LOC104820490 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 6.6e-19 98.6 178 36.0
Sopen10g005750 Solanum pennellii HOM05D003268 ORTHO05D003719 8.7e-19 98.2 217 34.1
Gohir.D13G184200 Gossypium hirsutum HOM05D003268 ORTHO05D003719 1.1e-18 97.8 192 34.4
Gorai.013G209800 Gossypium raimondii HOM05D003268 ORTHO05D003719 1.1e-18 97.8 192 34.4
Solyc10g011990.1 Solanum lycopersicum HOM05D003268 ORTHO05D003719 1.1e-18 97.8 217 33.6
ECA240G0886 Erigeron canadensis HOM05D003268 ORTHO05D003719 1.5e-18 97.4 199 32.7
PGSC0003DMG401019388 Solanum tuberosum HOM05D003268 ORTHO05D003719 1.5e-18 97.4 221 33.0
QL03p010269 Quercus lobata HOM05D003268 ORTHO05D003719 1.9e-18 97.1 221 33.9
QL03p010503 Quercus lobata HOM05D003268 ORTHO05D003719 1.9e-18 97.1 221 33.9
HanXRQChr09g0248281 Helianthus annuus HOM05D003268 ORTHO05D003719 2.5e-18 96.7 188 34.6
PGSC0003DMG400044873 Solanum tuberosum HOM05D003268 ORTHO05D003719 2.5e-18 96.7 190 34.7
Ah.10g026900 Amaranthus hybridus HOM05D003268 ORTHO05D003719 3.3e-18 96.3 186 33.9
Migut.N00971 Erythranthe guttata HOM05D003268 ORTHO05D003719 4.3e-18 95.9 188 34.0
FAN02G3445 Fragaria x ananassa HOM05D003268 ORTHO05D003719 5.6e-18 95.5 201 36.3
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 5.6e-18 95.5 206 34.5
A06p06210 Brassica napus HOM05D003268 ORTHO05D003719 7.3e-18 95.1 180 36.1
BraA06t23832Z Brassica rapa HOM05D003268 ORTHO05D003719 7.3e-18 95.1 180 36.1
C08p49440 Brassica napus HOM05D003268 ORTHO05D003719 1.3e-17 94.4 210 33.8
HPP92_012769 Vanilla planifolia HOM05D003268 ORTHO05D003719 1.3e-17 94.4 216 34.7
Ciclev10013870m.g Citrus clementina HOM05D003268 ORTHO05D003719 1.6e-17 94.0 166 36.7
HanXRQChr09g0250221 Helianthus annuus HOM05D003268 ORTHO05D003719 2.1e-17 93.6 191 33.5
A01p36890 Brassica napus HOM05D003268 ORTHO05D003719 3.6e-17 92.8 186 35.5
Carub.0003s1718 Capsella rubella HOM05D003268 ORTHO05D003719 3.6e-17 92.8 199 32.7
BraA08t35363Z Brassica rapa HOM05D003268 ORTHO05D003719 6.2e-17 92.0 188 34.6
TPR.G2590 Trifolium pratense HOM05D003268 ORTHO05D003719 6.2e-17 92.0 175 33.1
Atru.chr12.1545 Acer truncatum HOM05D003268 ORTHO05D003719 8.1e-17 91.7 193 34.2
HanXRQChr10g0294291 Helianthus annuus HOM05D003268 ORTHO05D003719 8.1e-17 91.7 187 32.6
Psat6g155480 Pisum sativum HOM05D003268 ORTHO05D003719 8.1e-17 91.7 184 31.0
C08p12950 Brassica napus HOM05D003268 ORTHO05D003719 1.1e-16 91.3 182 35.7
BraA01t03748Z Brassica rapa HOM05D003268 ORTHO05D003719 1.1e-16 91.3 186 34.9
A08p34520 Brassica napus HOM05D003268 ORTHO05D003719 1.4e-16 90.9 217 31.8
CARHR092780 Cardamine hirsuta HOM05D003268 ORTHO05D003719 3.1e-16 89.7 195 33.3
Aqoxy5G02799 Aquilegia oxysepala HOM05D003268 ORTHO05D003719 4.0e-16 89.4 194 29.9
BolC8t48925H Brassica oleracea HOM05D003268 ORTHO05D003719 4.0e-16 89.4 215 31.6
ECA234G2755 Erigeron canadensis HOM05D003268 ORTHO05D003719 5.3e-16 89.0 180 32.8
C01p46720 Brassica napus HOM05D003268 ORTHO05D003719 6.9e-16 88.6 169 36.1
FAN09G1400 Fragaria x ananassa HOM05D003268 ORTHO05D003719 1.2e-15 87.8 192 33.9
A09p65470 Brassica napus HOM05D003268 ORTHO05D003719 1.5e-15 87.4 208 34.1
BraA09t41892Z Brassica rapa HOM05D003268 ORTHO05D003719 1.5e-15 87.4 208 34.1
Migut.B00880 Erythranthe guttata HOM05D003268 ORTHO05D003719 2.6e-15 86.7 184 34.2
Migut.O00762 Erythranthe guttata HOM05D003268 ORTHO05D003719 2.6e-15 86.7 177 32.8
C08p00580 Brassica napus HOM05D003268 ORTHO05D003719 5.8e-15 85.5 211 34.1
AL3G30540 Arabidopsis lyrata HOM05D003268 ORTHO05D003719 7.6e-15 85.1 207 31.9
BcaB04g20839 Brassica carinata HOM05D003268 ORTHO05D003719 9.9e-15 84.7 182 35.2
DCAR_001893 Daucus carota HOM05D003268 ORTHO05D003719 1.3e-14 84.3 191 33.0
Lalb_Chr02g0147571 Lupinus albus HOM05D003268 ORTHO05D003719 2.2e-14 83.6 169 33.7
AT3G17460 Arabidopsis thaliana HOM05D003268 ORTHO05D003719 2.9e-14 83.2 187 32.1
BolC8t52481H Brassica oleracea HOM05D003268 ORTHO05D003719 8.4e-14 81.6 146 35.6
Lalb_Chr06g0167311 Lupinus albus HOM05D003268 ORTHO05D003719 8.4e-14 81.6 172 33.7
VMungo0720G1780 Vigna mungo HOM05D003268 ORTHO05D003719 2.4e-13 80.1 171 34.5
ATR0796G330 Amborella trichopoda HOM05D003268 ORTHO05D003719 9.3e-13 78.2 223 29.6
BcaC07g38514 Brassica carinata HOM05D003268 ORTHO05D003719 9.3e-13 78.2 198 30.8
Glyma.10G143800 Glycine max HOM05D003268 ORTHO05D003719 1.2e-12 77.8 183 32.2
Lj5g0018140 Lotus japonicus HOM05D003268 ORTHO05D003719 3.5e-12 76.3 162 28.4
BcaC07g36965 Brassica carinata HOM05D003268 ORTHO05D003719 6.0e-12 75.5 101 39.6
C05p48980 Brassica napus HOM05D003268 ORTHO05D003719 7.9e-12 75.1 165 37.0
BolC5t33638H Brassica oleracea HOM05D003268 ORTHO05D003719 7.9e-12 75.1 165 37.0
Glyma.20G092502 Glycine max HOM05D003268 ORTHO05D003719 7.9e-12 75.1 171 31.0
unitig_578.g15945 Utricularia gibba HOM05D003268 ORTHO05D003719 1.3e-11 74.3 95 40.0
Phvul.007G204700 Phaseolus vulgaris HOM05D003268 ORTHO05D003719 1.8e-11 73.9 177 30.5
BcaC05g28789 Brassica carinata HOM05D003268 ORTHO05D003719 3.9e-11 72.8 166 37.3
FAN05G0723 Fragaria x ananassa HOM05D003268 ORTHO05D003719 7.4e-10 68.6 73 43.8
SEGI_18442 Sequoiadendron giganteum HOM05D003268 ORTHO05D003719 1.3e-09 67.8 213 27.7
BcaB06g25842 Brassica carinata HOM05D003268 ORTHO05D003719 1.6e-09 67.4 184 33.2
Actinidia17741 Actinidia chinensis HOM05D003268 ORTHO05D003719 9.0e-08 61.6 112 36.6
BcaC07g38513 Brassica carinata HOM05D003268 ORTHO05D003719 1.7e-06 57.4 185 29.7


User provided reference genes

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