Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006713.2 Cucumis melo HOM05D006559 ORTHO05D008867 0.0e+00 1354.3 679 100.0
CsaV3_3G015150 Cucumis sativus L. HOM05D006559 ORTHO05D008867 0.0e+00 1285.0 679 95.0
Sed0004607 Sechium edule HOM05D006559 ORTHO05D008867 0.0e+00 1151.3 679 85.3
Dinv44291 Davidia involucrata HOM05D006559 ORTHO05D008867 3.9e-253 878.2 668 68.1
Cfa008663 Carpinus fangiana HOM05D006559 ORTHO05D008867 6.3e-251 870.9 685 66.0
Cpa.g.sc9.65 Carica papaya HOM05D006559 ORTHO05D008867 5.0e-248 861.3 661 67.0
Thecc.04G299700 Theobroma cacao HOM05D006559 ORTHO05D008867 6.5e-248 860.9 669 67.0
ClCG00G004240 Citrullus lanatus HOM05D006559 ORTHO05D008867 8.5e-248 860.5 537 84.4
Hma1.2p1_0078F.1_g039970 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 3.0e-245 852.0 626 68.1
Gohir.A09G234700 Gossypium hirsutum HOM05D006559 ORTHO05D008867 5.2e-245 851.3 674 65.4
TWI73G0870 Tripterygium wilfordii HOM05D006559 ORTHO05D008867 1.2e-244 850.1 689 64.0
Manes.03G204300 Manihot esculenta HOM05D006559 ORTHO05D008867 1.3e-243 846.7 672 66.8
Gorai.006G258500 Gossypium raimondii HOM05D006559 ORTHO05D008867 2.2e-243 845.9 674 65.3
Gohir.D09G235500 Gossypium hirsutum HOM05D006559 ORTHO05D008867 5.3e-242 841.3 674 65.0
vmacro08053 Vaccinium macrocarpon HOM05D006559 ORTHO05D008867 4.5e-241 838.2 674 63.9
CANSAT64G0770 Cannabis sativa HOM05D006559 ORTHO05D008867 1.7e-240 836.3 656 66.0
Sabra10G0111500 Salix brachista HOM05D006559 ORTHO05D008867 5.0e-240 834.7 657 65.9
Potri.010G144400 Populus trichocarpa HOM05D006559 ORTHO05D008867 8.0e-238 827.4 658 64.9
Rhsim04G0235400 Rhododendron simsii HOM05D006559 ORTHO05D008867 8.8e-237 823.9 668 63.9
GSVIVG01035001001 Vitis vinifera HOM05D006559 ORTHO05D008867 2.6e-236 822.4 666 64.3
Hund11970 Selenicereus undatus HOM05D006559 ORTHO05D008867 4.8e-235 818.1 683 61.2
RcHm_v2.0_Chr4g0424901 Rosa chinensis HOM05D006559 ORTHO05D008867 1.1e-234 817.0 675 62.5
Lalb_Chr07g0182081 Lupinus albus HOM05D006559 ORTHO05D008867 4.1e-234 815.1 669 63.4
AUR62039288 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.5e-231 806.6 701 58.3
Lj4g0009670 Lotus japonicus HOM05D006559 ORTHO05D008867 3.3e-231 805.4 674 62.8
Ciclev10004497m.g Citrus clementina HOM05D006559 ORTHO05D008867 8.0e-230 800.8 677 62.0
Sc19g0003140 Simmondsia chinensis HOM05D006559 ORTHO05D008867 8.0e-230 800.8 671 60.7
VMungo1215G0265 Vigna mungo HOM05D006559 ORTHO05D008867 6.8e-229 797.7 672 63.4
arahy.Tifrunner.gnm1.ann1.Y9UCUD Arachis hypogaea HOM05D006559 ORTHO05D008867 2.6e-228 795.8 673 62.3
Ca_21444_v3 Cicer arietinum L. HOM05D006559 ORTHO05D008867 2.6e-228 795.8 682 62.0
Psat4g024080 Pisum sativum HOM05D006559 ORTHO05D008867 3.4e-228 795.4 670 62.2
Medtr4g122000 Medicago truncatula HOM05D006559 ORTHO05D008867 4.4e-228 795.0 660 63.0
FvH4_4g19640 Fragaria vesca HOM05D006559 ORTHO05D008867 7.5e-228 794.3 662 61.6
MD13G1155000 Malus domestica HOM05D006559 ORTHO05D008867 1.3e-227 793.5 673 62.6
Prupe.1G118000 Prunus persica HOM05D006559 ORTHO05D008867 4.9e-227 791.6 672 62.2
AUR62016199 Chenopodium quinoa HOM05D006559 ORTHO05D008867 8.3e-227 790.8 751 54.6
Glyma.17G033200 Glycine max HOM05D006559 ORTHO05D008867 1.4e-226 790.0 679 63.3
Nn3g21720 Nelumbo nucifera HOM05D006559 ORTHO05D008867 2.4e-226 789.3 651 63.7
Glyma.07G240200 Glycine max HOM05D006559 ORTHO05D008867 5.4e-226 788.1 676 62.1
Migut.G00055 Erythranthe guttata HOM05D006559 ORTHO05D008867 9.2e-226 787.3 668 60.6
arahy.Tifrunner.gnm1.ann1.57X5SD Arachis hypogaea HOM05D006559 ORTHO05D008867 2.0e-225 786.2 673 61.5
Eucgr.H04041 Eucalyptus grandis HOM05D006559 ORTHO05D008867 2.0e-225 786.2 669 61.0
Phvul.003G113900 Phaseolus vulgaris HOM05D006559 ORTHO05D008867 2.7e-225 785.8 660 63.6
CAN.G244.5 Capsicum annuum HOM05D006559 ORTHO05D008867 1.0e-224 783.9 669 60.7
FAN12G1983 Fragaria x ananassa HOM05D006559 ORTHO05D008867 2.3e-224 782.7 674 60.4
Haze_11682 Corylus avellana HOM05D006559 ORTHO05D008867 2.9e-224 782.3 752 57.4
DCAR_002509 Daucus carota HOM05D006559 ORTHO05D008867 5.0e-224 781.6 673 60.5
CSS0039775 Camellia sinensis var. sinensis HOM05D006559 ORTHO05D008867 6.6e-224 781.2 673 61.1
Cc03_g00890 Coffea canephora HOM05D006559 ORTHO05D008867 8.6e-224 780.8 661 61.4
PGSC0003DMG400021843 Solanum tuberosum HOM05D006559 ORTHO05D008867 2.1e-222 776.2 661 60.7
SGA_v2.0_scaffold18G08402 Striga asiatica HOM05D006559 ORTHO05D008867 1.3e-219 766.9 669 58.0
Solyc01g059920.4 Solanum lycopersicum HOM05D006559 ORTHO05D008867 2.2e-219 766.1 676 59.3
Sopen01g026050 Solanum pennellii HOM05D006559 ORTHO05D008867 3.7e-219 765.4 676 58.9
Nitab4.5_0011895g0010 Nicotiana tabacum HOM05D006559 ORTHO05D008867 1.4e-218 763.5 693 59.2
ECA246G2012 Erigeron canadensis HOM05D006559 ORTHO05D008867 1.9e-218 763.1 672 58.5
Oeu032013.1 Olea europaea HOM05D006559 ORTHO05D008867 1.2e-217 760.4 667 61.2
MSTRG.3859 Avicennia marina HOM05D006559 ORTHO05D008867 2.0e-217 759.6 672 58.9
PSO210G1317 Papaver somniferum HOM05D006559 ORTHO05D008867 6.0e-217 758.1 664 59.6
SalBow8G4902 Salvia bowleyana HOM05D006559 ORTHO05D008867 6.0e-217 758.1 655 60.2
Peaxi162Scf00228g00226 Petunia axillaris HOM05D006559 ORTHO05D008867 1.7e-216 756.5 694 58.4
EL10Ac3g05493 Beta vulgaris HOM05D006559 ORTHO05D008867 2.3e-216 756.1 702 56.4
Aqoxy2G02735 Aquilegia oxysepala HOM05D006559 ORTHO05D008867 8.6e-216 754.2 663 60.0
MBI18_g32021_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D008867 1.1e-213 747.3 653 60.5
Lsat_1_v5_gn_6_116281 Lactuca sativa HOM05D006559 ORTHO05D008867 5.4e-210 734.9 676 59.2
THA.LOC104820440 Tarenaya hassleriana HOM05D006559 ORTHO05D008867 1.7e-208 729.9 637 59.2
TPR.G5276 Trifolium pratense HOM05D006559 ORTHO05D008867 2.1e-206 723.0 712 56.0
Ah.13g071910 Amaranthus hybridus HOM05D006559 ORTHO05D008867 3.1e-205 719.2 674 57.0
AT3G17030 Arabidopsis thaliana HOM05D006559 ORTHO05D008867 1.2e-204 717.2 685 55.5
Sp3g15250 Schrenkiella parvula HOM05D006559 ORTHO05D008867 1.3e-203 713.8 688 54.2
Carub.0003s1678 Capsella rubella HOM05D006559 ORTHO05D008867 4.1e-202 708.8 686 54.4
AL3G30010 Arabidopsis lyrata HOM05D006559 ORTHO05D008867 4.6e-201 705.3 688 54.4
Thhalv10020210m.g Eutrema salsugineum HOM05D006559 ORTHO05D008867 1.7e-200 703.4 672 54.6
Aa31LG8G4060 Aethionema arabicum HOM05D006559 ORTHO05D008867 5.6e-199 698.4 686 53.5
FAN07G1421 Fragaria x ananassa HOM05D006559 ORTHO05D008867 9.5e-199 697.6 654 56.6
A01p37300 Brassica napus HOM05D006559 ORTHO05D008867 1.6e-198 696.8 686 54.8
BraA01t03788Z Brassica rapa HOM05D006559 ORTHO05D008867 1.6e-198 696.8 686 54.4
COL.COLO4_34624 Corchorus olitorius HOM05D006559 ORTHO05D008867 1.6e-198 696.8 670 57.9
Duzib151G0228 Durio zibethinus HOM05D006559 ORTHO05D008867 3.6e-198 695.7 664 57.4
Atru.chr4.3010 Acer truncatum HOM05D006559 ORTHO05D008867 1.3e-195 687.2 680 57.5
BcaC09g48654 Brassica carinata HOM05D006559 ORTHO05D008867 1.7e-195 686.8 681 53.9
BolC1t04694H Brassica oleracea HOM05D006559 ORTHO05D008867 6.4e-195 684.9 684 53.9
C01p47240 Brassica napus HOM05D006559 ORTHO05D008867 5.4e-194 681.8 682 53.8
Lj6A690G72 Lonicera japonica HOM05D006559 ORTHO05D008867 4.8e-190 668.7 519 65.7
HanXRQChr08g0236161 Helianthus annuus HOM05D006559 ORTHO05D008867 4.0e-189 665.6 660 56.5
CiPaw.01G113700 Carya illinoinensis HOM05D006559 ORTHO05D008867 1.2e-185 654.1 565 64.8
ATR0796G144 Amborella trichopoda HOM05D006559 ORTHO05D008867 3.9e-184 649.0 660 54.5
SHI00146 Sapria himalayana HOM05D006559 ORTHO05D008867 1.8e-181 640.2 663 52.9
Os03g0832500 Oryza sativa ssp. japonica HOM05D006559 ORTHO05D008867 7.4e-175 618.2 656 51.8
Nitab4.5_0000169g0190 Nicotiana tabacum HOM05D006559 ORTHO05D008867 2.5e-170 603.2 550 60.0
Zm00001eb063450 Zea mays HOM05D006559 ORTHO05D008867 3.5e-169 599.4 662 50.6
Actinidia40373 Actinidia chinensis HOM05D006559 ORTHO05D008867 2.3e-168 596.7 480 64.6
SEGI_33199 Sequoiadendron giganteum HOM05D006559 ORTHO05D008867 7.4e-167 591.7 682 47.5
Hma1.2p1_0078F.1_g039960 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 5.3e-157 558.9 524 58.2
unitig_32.g11851 Utricularia gibba HOM05D006559 ORTHO05D008867 1.0e-152 544.7 654 48.5
HPP92_015242 Vanilla planifolia HOM05D006559 ORTHO05D008867 1.6e-137 494.2 652 44.9
CARHR092280 Cardamine hirsuta HOM05D006559 ORTHO05D008867 7.7e-124 448.7 408 58.8
Mapoly0086s0053 Marchantia polymorpha HOM05D006559 ORTHO05D008867 3.7e-118 429.9 652 40.5
AagrBONN_evm.TU.Sc2ySwM_344.4908 Anthoceros agrestis HOM05D006559 ORTHO05D008867 3.0e-112 410.2 672 37.9
RcHm_v2.0_Chr4g0424931 Rosa chinensis HOM05D006559 ORTHO05D008867 5.6e-90 336.3 402 50.5
TAR365G1053 Trochodendron aralioides HOM05D006559 ORTHO05D008867 4.9e-86 323.2 243 67.9
SMO116G0303 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 9.3e-77 292.4 470 40.0
SMO239G0200 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 2.6e-71 274.2 520 36.7
TPR.G16835 Trifolium pratense HOM05D006559 ORTHO05D008867 1.1e-66 258.8 624 33.3
Hma1.2p1_0078F.1_g039980 Hydrangea macrophylla HOM05D006559 ORTHO05D008867 1.2e-52 212.2 145 67.6
AUR62035935 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.8e-51 208.4 230 47.4
AUR62044438 Chenopodium quinoa HOM05D006559 ORTHO05D008867 7.4e-50 203.0 190 52.6
AUR62038912 Chenopodium quinoa HOM05D006559 ORTHO05D008867 1.4e-37 162.2 229 40.2
SMO195G0016 Selaginella moellendorffii HOM05D006559 ORTHO05D008867 1.4e-37 162.2 409 32.8
Actinidia27128 Actinidia chinensis HOM05D006559 ORTHO05D008867 6.9e-32 143.3 99 70.7
Lj6A690T73 Lonicera japonica HOM05D006559 ORTHO05D008867 7.9e-28 129.8 92 65.2
RcHm_v2.0_Chr4g0425081 Rosa chinensis HOM05D006559 ORTHO05D008867 7.0e-24 116.7 112 55.4
MBI14_g17950_MAGBIO Magnolia biondii HOM05D006559 ORTHO05D241410 2.0e-23 115.2 145 47.6
Cc03_g00880 Coffea canephora HOM05D006559 ORTHO05D008867 3.8e-22 110.9 87 63.2
RcHm_v2.0_Chr4g0425061 Rosa chinensis HOM05D006559 ORTHO05D008867 8.5e-22 109.8 121 52.1
RcHm_v2.0_Chr3g0458131 Rosa chinensis HOM05D006559 ORTHO05D050582 4.1e-16 90.9 74 63.5
BcaC01g05501 Brassica carinata HOM05D006559 ORTHO05D019951 8.5e-14 83.2 88 51.1
BcaB04g20870 Brassica carinata HOM05D006559 ORTHO05D019951 1.1e-13 82.8 90 51.1
Potri.008G105850 Populus trichocarpa HOM05D006559 ORTHO05D050582 8.0e-12 76.6 65 58.5
RcHm_v2.0_Chr4g0425071 Rosa chinensis HOM05D006559 ORTHO05D343184 5.7e-10 70.5 83 49.4


User provided reference genes

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