Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006687.2 Cucumis melo HOM05D005806 ORTHO05D007119 9.7e-241 836.6 499 100.0
CsaV3_3G014910 Cucumis sativus L. HOM05D005806 ORTHO05D007119 1.7e-213 746.1 442 95.2
ClCG05G006280 Citrullus lanatus HOM05D005806 ORTHO05D007119 5.0e-205 718.0 498 78.5
Sed0007282 Sechium edule HOM05D005806 ORTHO05D007119 1.9e-188 662.9 502 78.1
Duzib151G0580 Durio zibethinus HOM05D005806 ORTHO05D007119 7.2e-119 431.8 518 53.7
TWI09G1342 Tripterygium wilfordii HOM05D005806 ORTHO05D007119 2.1e-118 430.3 513 55.0
COL.COLO4_13808 Corchorus olitorius HOM05D005806 ORTHO05D007119 1.0e-117 427.9 534 56.4
TAR365G0831 Trochodendron aralioides HOM05D005806 ORTHO05D007119 1.1e-116 424.5 514 55.6
Cfa015433 Carpinus fangiana HOM05D005806 ORTHO05D007119 3.7e-115 419.5 522 59.0
Manes.03G199200 Manihot esculenta HOM05D005806 ORTHO05D007119 8.2e-115 418.3 523 56.4
Duzib212G0552 Durio zibethinus HOM05D005806 ORTHO05D007119 1.4e-114 417.5 517 52.0
Thecc.04G290100 Theobroma cacao HOM05D005806 ORTHO05D007119 1.4e-114 417.5 517 52.4
TAR365G0056 Trochodendron aralioides HOM05D005806 ORTHO05D007119 2.4e-114 416.8 513 55.2
Manes.15G010100 Manihot esculenta HOM05D005806 ORTHO05D007119 2.6e-113 413.3 519 56.3
QL06p010760 Quercus lobata HOM05D005806 ORTHO05D007119 2.6e-113 413.3 533 57.0
Cpa.g.sc50.151 Carica papaya HOM05D005806 ORTHO05D007119 7.7e-113 411.8 517 54.7
Atru.chr4.2914 Acer truncatum HOM05D005806 ORTHO05D007119 1.7e-112 410.6 516 51.0
Prupe.1G130400 Prunus persica HOM05D005806 ORTHO05D007119 4.2e-111 406.0 515 54.8
MD16G1163000 Malus domestica HOM05D005806 ORTHO05D007119 6.1e-110 402.1 510 50.6
Haze_01151 Corylus avellana HOM05D005806 ORTHO05D007119 5.7e-108 395.6 462 61.3
RcHm_v2.0_Chr4g0423561 Rosa chinensis HOM05D005806 ORTHO05D007119 2.8e-107 393.3 514 54.9
CSS0028282 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 1.2e-105 387.9 499 51.7
CiPaw.01G145000 Carya illinoinensis HOM05D005806 ORTHO05D007119 3.5e-105 386.3 458 58.5
Ciclev10004804m.g Citrus clementina HOM05D005806 ORTHO05D007119 4.5e-105 386.0 528 53.8
Gorai.011G193400 Gossypium raimondii HOM05D005806 ORTHO05D007119 3.8e-104 382.9 531 50.5
GSVIVG01035100001 Vitis vinifera HOM05D005806 ORTHO05D007119 5.0e-104 382.5 514 53.3
CSS0038808 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 2.3e-101 373.6 494 54.5
Gohir.D10G172900 Gossypium hirsutum HOM05D005806 ORTHO05D007119 2.3e-101 373.6 531 54.4
Potri.010G007000 Populus trichocarpa HOM05D005806 ORTHO05D007119 3.0e-101 373.2 505 54.5
CSS0004144 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 5.2e-101 372.5 494 55.1
FvH4_4g18770 Fragaria vesca HOM05D005806 ORTHO05D007119 1.5e-100 370.9 507 48.3
FAN12G2548 Fragaria x ananassa HOM05D005806 ORTHO05D007119 1.5e-100 370.9 507 47.9
FAN12G3921 Fragaria x ananassa HOM05D005806 ORTHO05D007119 1.5e-100 370.9 507 48.3
TWI73G0620 Tripterygium wilfordii HOM05D005806 ORTHO05D007119 5.7e-100 369.0 449 53.0
Lj3A825T23 Lonicera japonica HOM05D005806 ORTHO05D007119 1.1e-98 364.8 530 51.9
FAN17G0801 Fragaria x ananassa HOM05D005806 ORTHO05D007119 5.4e-98 362.5 507 49.1
Sabra10G0005700 Salix brachista HOM05D005806 ORTHO05D007119 9.1e-98 361.7 505 51.9
Nn3g21558 Nelumbo nucifera HOM05D005806 ORTHO05D007119 1.6e-97 360.9 449 57.9
THA.LOC104802587 Tarenaya hassleriana HOM05D005806 ORTHO05D007119 1.6e-97 360.9 532 51.5
CANSAT78G0145 Cannabis sativa HOM05D005806 ORTHO05D007119 2.0e-97 360.5 512 52.1
Eucgr.B01574 Eucalyptus grandis HOM05D005806 ORTHO05D007119 3.8e-96 356.3 533 50.5
CARHR092010 Cardamine hirsuta HOM05D005806 ORTHO05D007119 6.5e-96 355.5 512 46.5
Aqoxy5G00792 Aquilegia oxysepala HOM05D005806 ORTHO05D007119 4.2e-95 352.8 504 46.2
Dinv44345 Davidia involucrata HOM05D005806 ORTHO05D007119 4.2e-95 352.8 441 53.5
AT3G16760 Arabidopsis thaliana HOM05D005806 ORTHO05D007119 3.6e-94 349.7 513 46.6
arahy.Tifrunner.gnm1.ann1.TZ6N57 Arachis hypogaea HOM05D005806 ORTHO05D007119 3.6e-94 349.7 497 48.7
Actinidia40301 Actinidia chinensis HOM05D005806 ORTHO05D007119 3.0e-93 346.7 462 52.6
Sp3g15010 Schrenkiella parvula HOM05D005806 ORTHO05D007119 3.0e-93 346.7 529 45.9
Nn4g25745 Nelumbo nucifera HOM05D005806 ORTHO05D007119 2.0e-92 344.0 528 45.1
Carub.0003s1647 Capsella rubella HOM05D005806 ORTHO05D007119 3.4e-92 343.2 525 45.3
DCAR_002485 Daucus carota HOM05D005806 ORTHO05D007119 3.4e-92 343.2 509 46.0
Gohir.A10G166900 Gossypium hirsutum HOM05D005806 ORTHO05D007119 7.5e-92 342.0 472 54.4
FAN07G1609 Fragaria x ananassa HOM05D005806 ORTHO05D007119 9.8e-92 341.7 516 46.3
Sc13g0003160 Simmondsia chinensis HOM05D005806 ORTHO05D007119 1.3e-91 341.3 469 47.3
Oeu054004.1 Olea europaea HOM05D005806 ORTHO05D007119 1.7e-91 340.9 512 51.0
Sopen01g027600 Solanum pennellii HOM05D005806 ORTHO05D007119 8.3e-91 338.6 561 44.0
VMungo1215G2854 Vigna mungo HOM05D005806 ORTHO05D007119 1.4e-90 337.8 455 47.3
Solyc01g066050.3 Solanum lycopersicum HOM05D005806 ORTHO05D007119 4.1e-90 336.3 562 43.4
Thhalv10020624m.g Eutrema salsugineum HOM05D005806 ORTHO05D007119 1.6e-89 334.3 523 45.3
Glyma.07G244900 Glycine max HOM05D005806 ORTHO05D007119 2.0e-89 334.0 439 48.3
MBI18_g21793_MAGBIO Magnolia biondii HOM05D005806 ORTHO05D007119 3.5e-89 333.2 496 52.4
PSO832G4515 Papaver somniferum HOM05D005806 ORTHO05D007119 1.5e-87 327.8 447 53.0
CAN.G14.19 Capsicum annuum HOM05D005806 ORTHO05D007119 1.9e-87 327.4 515 50.1
AUR62018055 Chenopodium quinoa HOM05D005806 ORTHO05D007119 9.5e-87 325.1 529 44.8
Phvul.003G107800 Phaseolus vulgaris HOM05D005806 ORTHO05D007119 2.8e-86 323.6 457 51.4
PSO210G6439 Papaver somniferum HOM05D005806 ORTHO05D007119 6.1e-86 322.4 447 52.3
BolC1t04724H Brassica oleracea HOM05D005806 ORTHO05D007119 8.0e-86 322.0 516 43.8
BraA01t03813Z Brassica rapa HOM05D005806 ORTHO05D007119 8.0e-86 322.0 512 47.3
Aa31LG8G3830 Aethionema arabicum HOM05D005806 ORTHO05D007119 1.4e-85 321.2 532 43.8
EL10Ac3g06659 Beta vulgaris HOM05D005806 ORTHO05D007119 4.0e-85 319.7 460 49.1
C01p47550 Brassica napus HOM05D005806 ORTHO05D007119 4.0e-85 319.7 516 43.8
Glyma.17G028900 Glycine max HOM05D005806 ORTHO05D007119 1.2e-84 318.2 501 45.9
PGSC0003DMG400016813 Solanum tuberosum HOM05D005806 ORTHO05D007119 1.5e-84 317.8 528 43.4
BcaC09g48634 Brassica carinata HOM05D005806 ORTHO05D007119 2.6e-84 317.0 516 47.1
Oeu006424.1 Olea europaea HOM05D005806 ORTHO05D007119 2.6e-84 317.0 527 49.1
HanXRQChr03g0084151 Helianthus annuus HOM05D005806 ORTHO05D007119 4.4e-84 316.2 564 43.3
vmacro23238 Vaccinium macrocarpon HOM05D005806 ORTHO05D007119 5.7e-84 315.8 568 43.1
Peaxi162Scf00065g01121 Petunia axillaris HOM05D005806 ORTHO05D007119 2.9e-83 313.5 537 44.1
A01p37530 Brassica napus HOM05D005806 ORTHO05D007119 3.7e-83 313.2 513 47.6
Cc03_g01460 Coffea canephora HOM05D005806 ORTHO05D007119 3.7e-83 313.2 536 43.1
Lsat_1_v5_gn_6_78121 Lactuca sativa HOM05D005806 ORTHO05D007119 6.4e-83 312.4 531 44.3
Nitab4.5_0012392g0010 Nicotiana tabacum HOM05D005806 ORTHO05D007119 8.3e-83 312.0 472 47.7
Hund20516 Selenicereus undatus HOM05D005806 ORTHO05D007119 8.3e-83 312.0 463 47.1
Ah.13g074780 Amaranthus hybridus HOM05D005806 ORTHO05D007119 1.1e-82 311.6 474 44.9
Nitab4.5_0002215g0010 Nicotiana tabacum HOM05D005806 ORTHO05D007119 1.8e-82 310.8 554 43.7
ECA240G3979 Erigeron canadensis HOM05D005806 ORTHO05D007119 1.6e-81 307.8 428 48.1
Ca_21476_v3 Cicer arietinum L. HOM05D005806 ORTHO05D007119 4.6e-81 306.2 449 46.8
Medtr4g120360 Medicago truncatula HOM05D005806 ORTHO05D007119 3.0e-80 303.5 520 43.1
PGR031G2493 Punica granatum HOM05D005806 ORTHO05D007119 2.2e-75 287.3 453 50.3
SGA_v2.0_scaffold91G28032 Striga asiatica HOM05D005806 ORTHO05D007119 6.4e-75 285.8 530 41.5
Lj4g0013254 Lotus japonicus HOM05D005806 ORTHO05D007119 1.1e-74 285.0 447 49.4
MSTRG.10119 Avicennia marina HOM05D005806 ORTHO05D007119 7.8e-73 278.9 474 50.0
Lalb_Chr07g0182271 Lupinus albus HOM05D005806 ORTHO05D007119 3.9e-72 276.6 520 45.0
Migut.N00070 Erythranthe guttata HOM05D005806 ORTHO05D007119 1.1e-71 275.0 515 42.3
TAR362G1179 Trochodendron aralioides HOM05D005806 ORTHO05D007119 9.5e-71 271.9 332 56.9
Psat4g025560 Pisum sativum HOM05D005806 ORTHO05D007119 2.1e-70 270.8 446 42.2
SalBow5G0238 Salvia bowleyana HOM05D005806 ORTHO05D007119 6.2e-70 269.2 579 40.2
CDE12G0749 Ceratophyllum demersum HOM05D005806 ORTHO05D007119 8.9e-69 265.4 524 42.6
TAR633G1904 Trochodendron aralioides HOM05D005806 ORTHO05D007119 9.8e-68 261.9 290 51.4
Dinv29717 Davidia involucrata HOM05D005806 ORTHO05D007119 2.4e-66 257.3 286 62.2
arahy.Tifrunner.gnm1.ann1.T7VR84 Arachis hypogaea HOM05D005806 ORTHO05D007119 3.5e-65 253.4 298 50.3
HPP92_002231 Vanilla planifolia HOM05D005806 ORTHO05D007119 3.9e-64 250.0 433 41.1
MD13G1163500 Malus domestica HOM05D005806 ORTHO05D007119 1.4e-58 231.5 294 48.0
AUR62015254 Chenopodium quinoa HOM05D005806 ORTHO05D007119 4.6e-57 226.5 293 48.8
CDE01G0725 Ceratophyllum demersum HOM05D005806 ORTHO05D007119 4.3e-55 219.9 501 41.1
Zm00001eb016320 Zea mays HOM05D005806 ORTHO05D007119 3.4e-52 210.3 512 39.3
Os03g0340700 Oryza sativa ssp. japonica HOM05D005806 ORTHO05D007119 5.8e-52 209.5 455 37.4
Lalb_Chr13g0298181 Lupinus albus HOM05D005806 ORTHO05D007119 3.8e-51 206.8 238 58.4
SEGI_25850 Sequoiadendron giganteum HOM05D005806 ORTHO05D007119 2.6e-44 184.1 590 33.4
unitig_699.g19987 Utricularia gibba HOM05D005806 ORTHO05D007119 5.4e-42 176.4 522 38.5
AL3G29680 Arabidopsis lyrata HOM05D005806 ORTHO05D007119 2.1e-41 174.5 296 44.3
HanXRQChr13g0413981 Helianthus annuus HOM05D005806 ORTHO05D007119 6.6e-40 169.5 155 58.1
Rhsim04G0227400 Rhododendron simsii HOM05D005806 ORTHO05D007119 4.9e-35 153.3 343 37.9
TAR633G1627 Trochodendron aralioides HOM05D005806 ORTHO05D007119 4.2e-34 150.2 185 53.0
TAR362G0821 Trochodendron aralioides HOM05D005806 ORTHO05D007119 1.6e-30 138.3 157 51.6
SMO334G0099 Selaginella moellendorffii HOM05D005806 ORTHO05D007119 2.0e-28 131.3 195 41.5
Dinv29718 Davidia involucrata HOM05D000037 ORTHO05D000150 2.2e-27 127.9 130 57.7
AagrBONN_evm.TU.Sc2ySwM_228.3483 Anthoceros agrestis HOM05D005806 ORTHO05D007119 4.9e-27 126.7 193 51.3
CSS0010946 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 9.3e-26 122.5 72 80.6
AUR62015253 Chenopodium quinoa HOM05D005806 ORTHO05D007119 6.0e-25 119.8 168 47.0
CSS0023833 Camellia sinensis var. sinensis HOM05D005806 ORTHO05D007119 5.1e-24 116.7 72 79.2
CBR_g4056 Chara braunii HOM05D005806 ORTHO05D007119 1.7e-19 101.7 145 41.4
Pp3c12_16600 Physcomitrium patens HOM05D005806 ORTHO05D007119 2.1e-17 94.7 443 27.1
Pp3c4_12130 Physcomitrium patens HOM05D005806 ORTHO05D007119 1.0e-16 92.4 425 34.4
FvH4_5g32480 Fragaria vesca HOM05D005806 ORTHO05D007119 6.7e-16 89.7 95 57.9
HPP92_002153 Vanilla planifolia HOM05D005806 ORTHO05D007119 2.5e-15 87.8 94 46.8
Mapoly0005s0119 Marchantia polymorpha HOM05D005806 ORTHO05D007119 1.1e-13 82.4 414 28.7
SGA_v2.0_scaffold119G32699 Striga asiatica HOM05D005806 ORTHO05D007119 5.3e-13 80.1 71 54.9
CBR_g31779 Chara braunii HOM05D000019 ORTHO05D000002 2.9e-11 74.3 84 38.1
CBR_g39021 Chara braunii HOM05D000003 ORTHO05D000004 4.6e-09 67.0 83 34.9
Nn2g15616 Nelumbo nucifera HOM05D005806 ORTHO05D007119 1.5e-07 62.0 47 63.8


User provided reference genes

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