Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006663.2 Cucumis melo HOM05D004153 ORTHO05D004678 4.4e-92 341.3 173 100.0
CsaV3_3G014620 Cucumis sativus L. HOM05D004153 ORTHO05D004678 8.9e-85 317.0 166 95.8
Sed0018454 Sechium edule HOM05D004153 ORTHO05D004678 2.3e-64 249.2 164 75.0
Sed0010104 Sechium edule HOM05D004153 ORTHO05D004678 1.5e-63 246.5 165 73.9
Thecc.04G284700 Theobroma cacao HOM05D004153 ORTHO05D004678 5.1e-48 194.9 172 54.7
Duzib052G0234 Durio zibethinus HOM05D004153 ORTHO05D004678 3.7e-46 188.7 167 54.5
Glyma.09G044900 Glycine max HOM05D004153 ORTHO05D004678 3.7e-46 188.7 161 54.7
TWI53G1241 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 3.7e-46 188.7 173 56.6
Ciclev10007035m.g Citrus clementina HOM05D004153 ORTHO05D004678 3.1e-45 185.7 171 52.0
Lj6g0000547 Lotus japonicus HOM05D004153 ORTHO05D004678 3.1e-45 185.7 160 56.9
Haze_01203 Corylus avellana HOM05D004153 ORTHO05D004678 4.1e-45 185.3 162 58.0
Phvul.009G248000 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 2.0e-44 183.0 161 55.3
Atru.chr4.2837 Acer truncatum HOM05D004153 ORTHO05D004678 7.7e-44 181.0 177 52.0
Glyma.15G147800 Glycine max HOM05D004153 ORTHO05D004678 1.3e-43 180.3 161 50.9
Psat1g153880 Pisum sativum HOM05D004153 ORTHO05D004678 2.2e-43 179.5 161 56.5
TPR.G13834 Trifolium pratense HOM05D004153 ORTHO05D004678 2.9e-43 179.1 161 54.7
VMungo1309G0390 Vigna mungo HOM05D004153 ORTHO05D004678 2.9e-43 179.1 161 52.8
CANSAT78G0904 Cannabis sativa HOM05D004153 ORTHO05D004678 1.4e-42 176.8 169 52.1
Lj3P816T18 Lonicera japonica HOM05D004153 ORTHO05D004678 1.6e-41 173.3 155 56.1
Gorai.011G190200 Gossypium raimondii HOM05D004153 ORTHO05D004678 2.1e-41 172.9 154 53.9
Gohir.D10G170400 Gossypium hirsutum HOM05D004153 ORTHO05D004678 1.0e-40 170.6 154 53.2
Gohir.A10G164100 Gossypium hirsutum HOM05D004153 ORTHO05D004678 1.8e-40 169.9 154 52.6
Lalb_Chr18g0051691 Lupinus albus HOM05D004153 ORTHO05D004678 5.7e-39 164.9 167 50.9
RcHm_v2.0_Chr4g0422241 Rosa chinensis HOM05D004153 ORTHO05D004678 7.4e-39 164.5 178 47.2
Medtr2g436790 Medicago truncatula HOM05D004153 ORTHO05D004678 2.2e-38 162.9 161 52.8
PGR031G1230 Punica granatum HOM05D004153 ORTHO05D004678 3.1e-37 159.1 152 52.0
Lj3P819T20 Lonicera japonica HOM05D004153 ORTHO05D004678 4.1e-37 158.7 142 54.9
Eucgr.B01312 Eucalyptus grandis HOM05D004153 ORTHO05D004678 1.2e-36 157.1 159 47.8
FAN07G0961 Fragaria x ananassa HOM05D004153 ORTHO05D004678 1.2e-36 157.1 152 52.0
Prupe.1G136800 Prunus persica HOM05D004153 ORTHO05D004678 2.6e-36 156.0 140 51.4
EL10Ac3g06596 Beta vulgaris HOM05D004153 ORTHO05D004678 3.8e-35 152.1 157 48.4
TWI73G1192 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 3.8e-35 152.1 162 49.4
Aqoxy2G02983 Aquilegia oxysepala HOM05D004153 ORTHO05D004678 5.0e-35 151.8 160 47.5
COL.COLO4_23373 Corchorus olitorius HOM05D004153 ORTHO05D004678 1.4e-34 150.2 164 45.1
PSO675G8366 Papaver somniferum HOM05D004153 ORTHO05D004678 1.9e-34 149.8 160 45.0
PSO017G2667 Papaver somniferum HOM05D004153 ORTHO05D004678 2.5e-34 149.4 168 44.6
Potri.010G025200 Populus trichocarpa HOM05D004153 ORTHO05D004678 4.2e-34 148.7 174 46.6
Prupe.8G258500 Prunus persica HOM05D004153 ORTHO05D004678 4.2e-34 148.7 158 48.1
TWI23G0022 Tripterygium wilfordii HOM05D004153 ORTHO05D004678 4.2e-34 148.7 165 48.5
MD03G1285300 Malus domestica HOM05D004153 ORTHO05D004678 1.6e-33 146.7 157 49.0
QL12p027168 Quercus lobata HOM05D004153 ORTHO05D004678 7.9e-33 144.4 169 45.0
SalBow3G0249 Salvia bowleyana HOM05D004153 ORTHO05D004678 7.9e-33 144.4 161 46.0
FAN15G0276 Fragaria x ananassa HOM05D004153 ORTHO05D004678 1.4e-32 143.7 170 43.5
DCAR_002817 Daucus carota HOM05D004153 ORTHO05D004678 2.3e-32 142.9 158 44.9
Potri.014G131400 Populus trichocarpa HOM05D004153 ORTHO05D004678 2.3e-32 142.9 184 42.4
Atru.chr5.1180 Acer truncatum HOM05D004153 ORTHO05D004678 5.1e-32 141.7 163 46.0
Nitab4.5_0000619g0070 Nicotiana tabacum HOM05D004153 ORTHO05D004678 1.1e-31 140.6 163 43.6
Duzib138G0244 Durio zibethinus HOM05D004153 ORTHO05D004678 1.5e-31 140.2 164 44.5
Nn4g25841 Nelumbo nucifera HOM05D004153 ORTHO05D004678 2.0e-31 139.8 164 43.9
Peaxi162Scf00067g00254 Petunia axillaris HOM05D004153 ORTHO05D004678 2.0e-31 139.8 159 44.7
CAN.G339.31 Capsicum annuum HOM05D004153 ORTHO05D004678 2.6e-31 139.4 163 43.6
FvH4_2g25400 Fragaria vesca HOM05D004153 ORTHO05D004678 2.6e-31 139.4 166 42.8
FAN24G2766 Fragaria x ananassa HOM05D004153 ORTHO05D004678 2.6e-31 139.4 166 42.8
Manes.04G056100 Manihot esculenta HOM05D004153 ORTHO05D004678 3.3e-31 139.0 165 42.4
Nitab4.5_0003901g0020 Nicotiana tabacum HOM05D004153 ORTHO05D004678 3.3e-31 139.0 163 42.9
Potri.002G206100 Populus trichocarpa HOM05D004153 ORTHO05D004678 4.4e-31 138.7 167 41.3
RcHm_v2.0_Chr6g0293581 Rosa chinensis HOM05D004153 ORTHO05D004678 4.4e-31 138.7 166 42.8
Glyma.03G213300 Glycine max HOM05D004153 ORTHO05D004678 1.3e-30 137.1 146 47.9
Carub.0004s3048 Capsella rubella HOM05D004153 ORTHO05D004678 1.7e-30 136.7 157 44.6
Cc01_g20660 Coffea canephora HOM05D004153 ORTHO05D004678 2.8e-30 136.0 152 46.1
FAN15G2246 Fragaria x ananassa HOM05D000802 ORTHO05D001074 2.8e-30 136.0 158 43.7
Manes.03G195100 Manihot esculenta HOM05D004153 ORTHO05D004678 3.7e-30 135.6 164 45.7
Sc13g0003480 Simmondsia chinensis HOM05D004153 ORTHO05D004678 3.7e-30 135.6 150 48.7
Solyc09g074910.1 Solanum lycopersicum HOM05D004153 ORTHO05D004678 4.8e-30 135.2 153 44.4
FAN27G1399 Fragaria x ananassa HOM05D004153 ORTHO05D004678 8.2e-30 134.4 156 43.6
Gohir.A12G010800 Gossypium hirsutum HOM05D004153 ORTHO05D004678 8.2e-30 134.4 164 43.9
Lj1C0T8 Lonicera japonica HOM05D004153 ORTHO05D004678 1.1e-29 134.0 165 44.2
Lalb_Chr15g0078571 Lupinus albus HOM05D004153 ORTHO05D004678 1.1e-29 134.0 168 40.5
Phvul.001G205900 Phaseolus vulgaris HOM05D004153 ORTHO05D004678 1.1e-29 134.0 154 44.2
Lsat_1_v5_gn_9_1141 Lactuca sativa HOM05D004153 ORTHO05D004678 1.4e-29 133.7 163 39.9
Sopen09g029730 Solanum pennellii HOM05D004153 ORTHO05D004678 1.4e-29 133.7 153 43.8
THA.LOC104802169 Tarenaya hassleriana HOM05D004153 ORTHO05D004678 1.4e-29 133.7 154 45.5
AT2G47770 Arabidopsis thaliana HOM05D004153 ORTHO05D004678 1.8e-29 133.3 157 43.9
EL10Ac6g15659 Beta vulgaris HOM05D004153 ORTHO05D004678 1.8e-29 133.3 162 41.4
FAN20G2301 Fragaria x ananassa HOM05D004153 ORTHO05D004678 1.8e-29 133.3 166 42.8
Gohir.D12G011200 Gossypium hirsutum HOM05D004153 ORTHO05D004678 1.8e-29 133.3 164 43.3
Gorai.008G011200 Gossypium raimondii HOM05D004153 ORTHO05D004678 1.8e-29 133.3 164 43.3
Sabra02G0153200 Salix brachista HOM05D004153 ORTHO05D004678 2.4e-29 132.9 167 41.9
Haze_04898 Corylus avellana HOM05D004153 ORTHO05D004678 3.1e-29 132.5 147 49.0
Hma1.2p1_0209F.1_g088580 Hydrangea macrophylla HOM05D004153 ORTHO05D004678 3.1e-29 132.5 155 45.8
TAR365G1014 Trochodendron aralioides HOM05D004153 ORTHO05D004678 3.1e-29 132.5 141 48.2
PGSC0003DMG400035200 Solanum tuberosum HOM05D004153 ORTHO05D004678 4.1e-29 132.1 151 43.7
AL4G47340 Arabidopsis lyrata HOM05D004153 ORTHO05D004678 5.3e-29 131.7 157 42.7
arahy.Tifrunner.gnm1.ann1.3INE6D Arachis hypogaea HOM05D004153 ORTHO05D004678 1.5e-28 130.2 147 45.6
Manes.05G063900 Manihot esculenta HOM05D004153 ORTHO05D004678 1.5e-28 130.2 163 39.3
CiPaw.07G106600 Carya illinoinensis HOM05D004153 ORTHO05D004678 2.0e-28 129.8 165 41.8
HanXRQChr10g0284631 Helianthus annuus HOM05D004153 ORTHO05D004678 2.0e-28 129.8 162 37.0
Lsat_1_v5_gn_5_190540 Lactuca sativa HOM05D004153 ORTHO05D004678 2.0e-28 129.8 162 39.5
Oeu030970.1 Olea europaea HOM05D004153 ORTHO05D004678 2.6e-28 129.4 159 42.8
AUR62033157 Chenopodium quinoa HOM05D004153 ORTHO05D004678 3.5e-28 129.0 156 42.3
AUR62033169 Chenopodium quinoa HOM05D004153 ORTHO05D004678 3.5e-28 129.0 156 42.3
Ca_01937_v3 Cicer arietinum L. HOM05D000639 ORTHO05D004019 3.5e-28 129.0 113 54.9
MBI18_g21824_MAGBIO Magnolia biondii HOM05D004153 ORTHO05D004678 3.5e-28 129.0 156 44.2
Nn5g27910 Nelumbo nucifera HOM05D004153 ORTHO05D004678 5.9e-28 128.3 164 40.9
CARHR143140 Cardamine hirsuta HOM05D004153 ORTHO05D004678 1.0e-27 127.5 157 42.7
Migut.D00197 Erythranthe guttata HOM05D004153 ORTHO05D004678 1.3e-27 127.1 155 43.2
unitig_0.g1178 Utricularia gibba HOM05D004153 ORTHO05D004678 1.3e-27 127.1 159 42.1
VMungo1383G3271 Vigna mungo HOM05D004153 ORTHO05D004678 1.7e-27 126.7 154 42.2
Aa31LG1G29110 Aethionema arabicum HOM05D004153 ORTHO05D004678 2.2e-27 126.3 159 42.1
Medtr7g108650 Medicago truncatula HOM05D004153 ORTHO05D004678 6.5e-27 124.8 177 41.2
SGA_v2.0_scaffold2G01404 Striga asiatica HOM05D004153 ORTHO05D004678 6.5e-27 124.8 164 40.9
CANSAT01G1893 Cannabis sativa HOM05D004153 ORTHO05D004678 8.5e-27 124.4 163 41.1
Rhsim04G0221600 Rhododendron simsii HOM05D004153 ORTHO05D004678 1.5e-26 123.6 152 44.7
Lj1g0005892 Lotus japonicus HOM05D004153 ORTHO05D004678 1.9e-26 123.2 155 40.0
ClCG09G006030 Citrullus lanatus HOM05D004153 ORTHO05D004678 2.5e-26 122.9 156 44.2
Cfa005949 Carpinus fangiana HOM05D004153 ORTHO05D004678 3.2e-26 122.5 127 47.2
Thhalv10001647m.g Eutrema salsugineum HOM05D004153 ORTHO05D004678 4.2e-26 122.1 158 41.8
Ah.08g213200 Amaranthus hybridus HOM05D004153 ORTHO05D004678 5.5e-26 121.7 162 36.4
AUR62008617 Chenopodium quinoa HOM05D004153 ORTHO05D004678 7.2e-26 121.3 156 40.4
C04p72970 Brassica napus HOM05D004153 ORTHO05D004678 1.6e-25 120.2 158 42.4
BraA04t18942Z Brassica rapa HOM05D004153 ORTHO05D004678 1.6e-25 120.2 158 41.8
Cpa.g.sc9.210 Carica papaya HOM05D004153 ORTHO05D004678 4.7e-25 118.6 149 40.3
BcaC02g06991 Brassica carinata HOM05D004153 ORTHO05D004678 6.1e-25 118.2 158 41.8
BolC4t28778H Brassica oleracea HOM05D004153 ORTHO05D004678 6.1e-25 118.2 158 41.8
Psat3g022920 Pisum sativum HOM05D004153 ORTHO05D004678 6.1e-25 118.2 177 39.0
Sp4g29700 Schrenkiella parvula HOM05D004153 ORTHO05D004678 8.0e-25 117.9 157 41.4
A04p35060 Brassica napus HOM05D004153 ORTHO05D004678 1.8e-24 116.7 158 40.5
Lalb_Chr18g0047121 Lupinus albus HOM05D004153 ORTHO05D004678 2.3e-24 116.3 165 37.6
HanXRQChr01g0001291 Helianthus annuus HOM05D004153 ORTHO05D004678 3.0e-24 115.9 144 41.0
CSS0027100 Camellia sinensis var. sinensis HOM05D004153 ORTHO05D004678 5.2e-24 115.2 153 39.2
Ciclev10022120m.g Citrus clementina HOM05D004153 ORTHO05D004678 5.2e-24 115.2 157 40.8
Sed0026977 Sechium edule HOM05D004153 ORTHO05D004678 5.2e-24 115.2 155 38.1
Sabra10G0013900 Salix brachista HOM05D004153 ORTHO05D004678 6.7e-24 114.8 136 49.3
BcaB06g29494 Brassica carinata HOM05D004153 ORTHO05D004678 8.8e-24 114.4 158 41.1
BcaB06g29497 Brassica carinata HOM05D004153 ORTHO05D004678 8.8e-24 114.4 158 41.1
PGR119G1654 Punica granatum HOM05D004153 ORTHO05D004678 1.1e-23 114.0 169 39.6
PGR119G2063 Punica granatum HOM05D004153 ORTHO05D004678 1.1e-23 114.0 169 39.6
BcaB06g29496 Brassica carinata HOM05D004153 ORTHO05D004678 1.5e-23 113.6 148 42.6
C04p00110 Brassica napus HOM05D004153 ORTHO05D004678 1.5e-23 113.6 157 41.4
Thecc.01G297300 Theobroma cacao HOM05D004153 ORTHO05D004678 2.0e-23 113.2 163 39.9
BolC4t21658H Brassica oleracea HOM05D004153 ORTHO05D004678 4.4e-23 112.1 157 40.8
ATR0796G004 Amborella trichopoda HOM05D004153 ORTHO05D004678 2.2e-22 109.8 166 36.1
BcaC02g12543 Brassica carinata HOM05D004153 ORTHO05D004678 2.2e-22 109.8 157 40.8
BraA05t19015Z Brassica rapa HOM05D004153 ORTHO05D004678 5.9e-20 101.7 157 37.6
MD11G1304700 Malus domestica HOM05D004153 ORTHO05D004678 1.3e-19 100.5 95 50.5
MELO3C016017.2 Cucumis melo HOM05D004153 ORTHO05D004678 2.2e-19 99.8 156 38.5
A05p00190 Brassica napus HOM05D004153 ORTHO05D004678 6.5e-19 98.2 157 36.9
Rhsim01G0283900 Rhododendron simsii HOM05D004153 ORTHO05D004678 6.8e-16 88.2 155 34.2
HPP92_016940 Vanilla planifolia HOM05D004153 ORTHO05D004678 6.8e-16 88.2 159 33.3
AagrBONN_evm.TU.Sc2ySwM_362.296 Anthoceros agrestis HOM05D004153 ORTHO05D004678 8.8e-16 87.8 147 36.7
BcaB02g08747 Brassica carinata HOM05D004153 ORTHO05D004678 8.8e-16 87.8 157 35.7
CsaV3_7G029110 Cucumis sativus L. HOM05D004153 ORTHO05D004678 8.8e-16 87.8 118 39.8
SEGI_18828 Sequoiadendron giganteum HOM05D004153 ORTHO05D004678 8.8e-16 87.8 153 32.0
Actinidia24837 Actinidia chinensis HOM05D004153 ORTHO05D004678 3.4e-15 85.9 97 40.2
SMO115G0169 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 2.4e-13 79.7 130 36.9
Pp3c2_17540 Physcomitrium patens HOM05D004153 ORTHO05D004678 3.1e-13 79.3 147 34.0
Pp3c10_6760 Physcomitrium patens HOM05D004153 ORTHO05D004678 5.4e-13 78.6 159 33.3
CDE02G0764 Ceratophyllum demersum HOM05D004153 ORTHO05D004678 4.5e-12 75.5 134 30.6
Lj1C32T8 Lonicera japonica HOM05D004153 ORTHO05D004678 2.2e-11 73.2 170 31.2
Os05g0151200 Oryza sativa ssp. japonica HOM05D004153 ORTHO05D004678 1.9e-10 70.1 159 29.6
Zm00001eb354150 Zea mays HOM05D004153 ORTHO05D004678 1.9e-10 70.1 105 40.0
CBR_g30074 Chara braunii HOM05D004153 ORTHO05D004678 2.5e-10 69.7 143 29.4
AagrBONN_evm.TU.Sc2ySwM_117.3397 Anthoceros agrestis HOM05D004153 ORTHO05D004678 7.2e-10 68.2 135 31.9
Pp3c24_14170 Physcomitrium patens HOM05D004153 ORTHO05D004678 9.4e-10 67.8 162 30.2
SMO144G0096 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 2.1e-09 66.6 153 31.4
Mapoly0050s0023 Marchantia polymorpha HOM05D004153 ORTHO05D004678 4.7e-09 65.5 153 31.4
ECA248G0131 Erigeron canadensis HOM05D004153 ORTHO05D004678 5.2e-08 62.0 74 43.2
Actinidia21057 Actinidia chinensis HOM05D004153 ORTHO05D004678 6.8e-08 61.6 138 31.9
Dinv19716 Davidia involucrata HOM05D004153 ORTHO05D004678 8.8e-08 61.2 172 31.4
SMO340G0010 Selaginella moellendorffii HOM05D004153 ORTHO05D004678 2.2e-06 56.6 129 26.4
Mapoly0003s0268 Marchantia polymorpha HOM05D004153 ORTHO05D004678 2.8e-06 56.2 153 26.1


User provided reference genes

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