Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 0.0e+00 1664.8 844 100.0
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 0.0e+00 1631.3 844 98.0
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 0.0e+00 1591.6 844 94.9
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 0.0e+00 1540.0 844 91.0
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 0.0e+00 1537.7 844 90.2
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 0.0e+00 1535.8 844 90.8
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 0.0e+00 1534.2 844 89.9
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1530.8 844 89.9
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 0.0e+00 1530.0 844 89.8
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1528.1 844 89.7
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 0.0e+00 1527.3 844 90.4
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 0.0e+00 1523.5 844 89.7
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1522.3 844 89.9
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1517.3 844 89.3
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 0.0e+00 1516.5 844 89.5
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 0.0e+00 1516.1 844 89.6
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1514.6 844 88.3
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 0.0e+00 1511.9 844 88.2
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1511.5 844 89.1
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1511.5 855 88.5
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1511.1 844 88.5
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 0.0e+00 1511.1 844 89.1
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1510.0 873 86.6
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1509.6 844 89.1
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 0.0e+00 1509.2 860 87.7
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1508.4 844 87.9
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 0.0e+00 1508.0 844 89.0
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 0.0e+00 1507.7 844 89.3
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 0.0e+00 1506.5 844 88.9
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1503.0 844 88.6
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1501.9 844 88.4
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1501.5 843 88.1
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1500.7 844 88.4
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 0.0e+00 1500.0 843 87.4
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1499.6 844 88.5
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 0.0e+00 1497.6 844 88.3
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 0.0e+00 1495.3 844 87.7
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1493.8 844 87.8
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1493.0 843 87.3
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 0.0e+00 1492.2 845 88.0
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 0.0e+00 1492.2 843 87.9
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1491.9 853 86.4
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1491.9 853 86.4
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1491.9 856 86.9
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 0.0e+00 1490.7 833 91.8
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 0.0e+00 1489.9 841 87.5
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 0.0e+00 1489.2 844 87.8
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 0.0e+00 1488.8 844 87.9
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1488.8 870 86.6
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 0.0e+00 1488.0 844 87.0
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 0.0e+00 1486.9 844 86.8
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1486.9 844 86.7
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1486.5 853 86.2
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1486.1 871 85.4
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 0.0e+00 1486.1 844 87.7
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 0.0e+00 1485.7 844 87.4
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1482.6 844 86.5
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1481.8 844 86.8
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1481.1 844 86.5
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1480.3 853 85.8
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 0.0e+00 1480.3 844 86.8
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 0.0e+00 1478.4 844 87.2
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1477.6 843 87.4
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1477.2 844 87.1
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 0.0e+00 1476.8 843 86.4
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1476.8 843 87.0
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 0.0e+00 1476.8 844 87.1
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 0.0e+00 1471.1 844 85.9
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1471.1 843 87.1
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1471.1 844 86.4
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1464.1 844 85.1
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 0.0e+00 1463.7 842 85.4
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 0.0e+00 1463.7 843 85.1
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1459.5 844 85.3
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1459.5 843 85.8
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 0.0e+00 1456.8 846 86.1
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 0.0e+00 1455.3 844 84.4
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1454.9 890 83.1
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 0.0e+00 1454.9 844 85.3
Thecc.04G272600 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1454.9 803 89.9
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1452.2 844 83.8
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1448.7 844 83.8
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1447.6 844 84.5
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 0.0e+00 1444.1 843 84.6
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1442.2 844 84.1
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 0.0e+00 1439.1 844 84.2
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 0.0e+00 1439.1 844 83.8
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 0.0e+00 1435.6 844 84.1
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 0.0e+00 1433.7 844 83.6
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1433.3 861 82.6
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1431.4 844 83.5
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 0.0e+00 1431.4 844 82.6
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 0.0e+00 1429.8 844 85.3
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1429.5 844 83.6
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 0.0e+00 1426.8 844 83.2
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1425.2 843 82.9
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1425.2 843 82.9
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1424.8 843 82.8
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1424.5 843 83.0
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1423.7 844 82.7
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1421.8 843 82.8
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1420.6 844 82.5
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1419.8 844 82.2
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1417.9 844 82.5
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1417.1 844 82.3
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1416.0 870 81.6
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1414.8 850 82.1
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1412.9 957 76.6
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1401.7 830 82.4
Oeu032695.1 Olea europaea HOM05D003956 ORTHO05D004850 0.0e+00 1399.8 774 89.8
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 0.0e+00 1396.7 843 80.4
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1392.9 872 80.6
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1381.3 844 80.5
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 0.0e+00 1378.2 843 80.1
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1375.9 823 82.6
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 0.0e+00 1372.8 840 79.0
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 0.0e+00 1372.5 829 83.5
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 0.0e+00 1365.1 840 79.4
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1357.0 844 81.6
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1352.4 831 81.8
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1327.0 844 79.6
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1318.1 870 77.0
Psat4g028880 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1312.4 774 82.4
CSS0013368 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1298.9 774 84.2
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1286.2 874 75.1
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1273.5 851 77.9
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1268.1 851 78.0
Gohir.A10G105700 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1243.0 686 89.1
Zm00001eb287770 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1234.9 730 82.6
BcaC09g50243 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1226.8 779 78.6
MCO12G211 Micromonas commoda HOM05D003956 ORTHO05D004850 0.0e+00 1188.3 843 68.8
Cre17.g734548 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 0.0e+00 1159.1 845 67.9
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1151.0 840 70.2
unitig_749.g14056 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1101.7 633 85.6
Migut.G00280 Erythranthe guttata HOM05D003956 ORTHO05D004850 8.5e-306 1053.5 581 88.6
Cre10.g424750 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 4.9e-293 1011.1 853 60.0
MCO01G687 Micromonas commoda HOM05D003956 ORTHO05D004850 1.1e-255 887.1 892 54.1
Medtr4g118350 Medicago truncatula HOM05D003956 ORTHO05D004850 1.2e-254 883.6 519 84.2
AUR62035456 Chenopodium quinoa HOM05D003956 ORTHO05D004850 2.8e-216 756.1 504 78.2
AUR62034950 Chenopodium quinoa HOM05D003956 ORTHO05D004850 6.3e-200 701.8 421 83.4
AUR62035455 Chenopodium quinoa HOM05D003956 ORTHO05D004850 2.9e-197 693.0 397 86.4
AUR62034949 Chenopodium quinoa HOM05D003956 ORTHO05D004850 6.1e-195 685.3 450 78.9
CBR_g50184 Chara braunii HOM05D003956 ORTHO05D004850 5.2e-186 655.6 730 51.0
HanXRQChr03g0080571 Helianthus annuus HOM05D003956 ORTHO05D004850 1.6e-171 607.4 352 84.7
SGA_v2.0_scaffold86G26866 Striga asiatica HOM05D003956 ORTHO05D004850 7.5e-169 598.6 467 68.7
BcaC06g33414 Brassica carinata HOM05D003956 ORTHO05D004850 4.0e-162 576.2 338 84.0
SGA_v2.0_scaffold86G26865 Striga asiatica HOM05D003956 ORTHO05D004850 7.1e-143 512.3 391 68.8
Medtr4g118355 Medicago truncatula HOM05D003956 ORTHO05D004850 2.3e-141 507.3 296 84.8
AUR62034328 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.2e-113 415.2 423 55.3
arahy.Tifrunner.gnm1.ann1.9WT78J Arachis hypogaea HOM05D003956 ORTHO05D004850 1.1e-106 392.1 320 66.9
HanXRQChr16g0518081 Helianthus annuus HOM05D003956 ORTHO05D004850 3.7e-91 340.5 232 74.6
arahy.Tifrunner.gnm1.ann1.HZTZ4X Arachis hypogaea HOM05D003956 ORTHO05D004850 6.3e-91 339.7 264 67.8
arahy.Tifrunner.gnm1.ann1.7LSJ4G Arachis hypogaea HOM05D003956 ORTHO05D004850 8.0e-70 269.6 227 64.8
arahy.Tifrunner.gnm1.ann1.989M5Y Arachis hypogaea HOM05D003956 ORTHO05D004850 2.7e-65 254.6 216 62.5
unitig_749.g14057 Utricularia gibba HOM05D003956 ORTHO05D004850 2.8e-59 234.6 151 76.2
AagrBONN_evm.TU.Sc2ySwM_362.937 Anthoceros agrestis HOM05D003956 ORTHO05D004850 4.6e-49 200.7 119 80.7
arahy.Tifrunner.gnm1.ann1.S9XVUY Arachis hypogaea HOM05D003956 ORTHO05D004850 1.4e-42 179.1 268 42.5
arahy.Tifrunner.gnm1.ann1.LGH8AH Arachis hypogaea HOM05D003956 ORTHO05D004850 8.1e-30 136.7 83 80.7
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 4.0e-29 134.4 90 71.1
GSVIVG01018502001 Vitis vinifera HOM05D003956 ORTHO05D004850 4.0e-29 134.4 81 84.0
Pp3c6_6540 Physcomitrium patens HOM05D003956 ORTHO05D004850 5.4e-26 124.0 83 71.1
arahy.Tifrunner.gnm1.ann1.G5444S Arachis hypogaea HOM05D003956 ORTHO05D004850 7.8e-25 120.2 95 67.4
QL06p005983 Quercus lobata HOM05D003956 ORTHO05D004850 2.5e-23 115.2 130 52.3
Pp3s196_40 Physcomitrium patens HOM05D003956 ORTHO05D044360 5.6e-23 114.0 454 27.1
TPR.G26738 Trifolium pratense HOM05D003956 ORTHO05D000576 3.8e-19 101.3 56 80.4
BcaC09g50244 Brassica carinata HOM05D003956 ORTHO05D004850 1.0e-16 93.2 55 78.2
TPR.G35464 Trifolium pratense HOM05D003956 ORTHO05D004850 2.3e-16 92.0 60 70.0
MBI15_g32557_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 2.4e-13 82.0 57 73.7
arahy.Tifrunner.gnm1.ann1.57CL3B Arachis hypogaea HOM05D003956 ORTHO05D004850 2.9e-11 75.1 51 70.6
arahy.Tifrunner.gnm1.ann1.V4Y3U4 Arachis hypogaea HOM05D003956 ORTHO05D004850 3.8e-11 74.7 49 73.5
SGA_v2.0_scaffold86G26869 Striga asiatica HOM05D000924 ORTHO05D001209 4.2e-10 71.2 46 78.3
HanXRQChr09g0261911 Helianthus annuus HOM05D000495 ORTHO05D000357 7.9e-09 67.0 42 71.4
Nn8g40271 Nelumbo nucifera HOM05D001541 ORTHO05D001465 1.3e-08 66.2 36 80.6
arahy.Tifrunner.gnm1.ann1.GGZS5I Arachis hypogaea HOM05D003956 ORTHO05D004850 2.3e-08 65.5 43 74.4
Pp3c5_22980 Physcomitrium patens HOM05D003956 ORTHO05D004850 2.3e-08 65.5 43 72.1


User provided reference genes

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