Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006567.2 Cucumis melo HOM05D007677 ORTHO05D009728 7.6e-82 307.0 143 100.0
ClCG05G005440 Citrullus lanatus HOM05D007677 ORTHO05D009728 2.2e-81 305.4 142 97.9
CsaV3_3G013730 Cucumis sativus L. HOM05D007677 ORTHO05D009728 8.5e-81 303.5 143 98.6
Sed0011127 Sechium edule HOM05D007677 ORTHO05D009728 1.3e-78 296.2 143 94.4
COL.COLO4_21648 Corchorus olitorius HOM05D007677 ORTHO05D009728 8.5e-73 276.9 152 82.9
Thecc.04G221700 Theobroma cacao HOM05D007677 ORTHO05D009728 6.1e-71 270.8 149 82.6
Manes.03G184600 Manihot esculenta HOM05D007677 ORTHO05D009728 5.1e-70 267.7 150 81.3
CiPaw.01G160100 Carya illinoinensis HOM05D007677 ORTHO05D009728 1.1e-69 266.5 149 81.9
QL06p004212 Quercus lobata HOM05D007677 ORTHO05D009728 1.1e-69 266.5 148 81.1
Ciclev10006064m.g Citrus clementina HOM05D007677 ORTHO05D009728 2.6e-69 265.4 151 78.8
CiPaw.02G092500 Carya illinoinensis HOM05D007677 ORTHO05D009728 7.4e-69 263.8 149 79.9
Duzib212G0325 Durio zibethinus HOM05D001530 ORTHO05D003676 8.2e-68 260.4 149 80.5
MD13G1183200 Malus domestica HOM05D007677 ORTHO05D009728 1.1e-67 260.0 152 79.6
FvH4_4g14500 Fragaria vesca HOM05D007677 ORTHO05D009728 5.3e-67 257.7 148 80.4
FAN12G4178 Fragaria x ananassa HOM05D007677 ORTHO05D009728 5.3e-67 257.7 148 80.4
MD16G1184100 Malus domestica HOM05D007677 ORTHO05D009728 1.5e-66 256.1 152 77.6
Prupe.1G151500 Prunus persica HOM05D007677 ORTHO05D009728 2.6e-66 255.4 151 78.8
Cfa015583 Carpinus fangiana HOM05D007677 ORTHO05D009728 7.7e-66 253.8 149 79.9
FAN07G0089 Fragaria x ananassa HOM05D007677 ORTHO05D009728 7.7e-66 253.8 148 79.1
Gohir.A02G031000 Gossypium hirsutum HOM05D007677 ORTHO05D009728 7.7e-66 253.8 150 77.3
RcHm_v2.0_Chr4g0418331 Rosa chinensis HOM05D007677 ORTHO05D009728 1.0e-65 253.4 148 79.7
TWI09G0567 Tripterygium wilfordii HOM05D007677 ORTHO05D009728 2.2e-65 252.3 146 79.5
Haze_00962 Corylus avellana HOM05D007677 ORTHO05D009728 3.8e-65 251.5 149 79.2
Gohir.D02G037900 Gossypium hirsutum HOM05D007677 ORTHO05D009728 3.2e-64 248.4 150 76.0
Gorai.005G041800 Gossypium raimondii HOM05D007677 ORTHO05D009728 3.2e-64 248.4 150 76.0
CANSAT78G2143 Cannabis sativa HOM05D007677 ORTHO05D009728 6.1e-63 244.2 145 77.9
Nn1g02165 Nelumbo nucifera HOM05D007677 ORTHO05D009728 1.4e-62 243.0 149 75.8
VMungo1215G2604 Vigna mungo HOM05D007677 ORTHO05D009728 5.2e-62 241.1 147 75.5
Sabra10G0011000 Salix brachista HOM05D001530 ORTHO05D004168 1.5e-61 239.6 150 74.0
Phvul.003G092600 Phaseolus vulgaris HOM05D007677 ORTHO05D009728 2.6e-61 238.8 147 73.5
Lj4g0019321 Lotus japonicus HOM05D007677 ORTHO05D009728 1.4e-59 233.0 151 71.5
Phvul.006G153800 Phaseolus vulgaris HOM05D007677 ORTHO05D009728 1.8e-59 232.6 149 73.2
Glyma.17G017000 Glycine max HOM05D007677 ORTHO05D009728 3.1e-59 231.9 147 72.8
CSS0026660 Camellia sinensis var. sinensis HOM05D007677 ORTHO05D009728 4.1e-59 231.5 150 71.3
Eucgr.H03598 Eucalyptus grandis HOM05D007677 ORTHO05D009728 7.0e-59 230.7 149 73.2
DCAR_030598 Daucus carota HOM05D007677 ORTHO05D009728 2.0e-58 229.2 149 71.1
Cc03_g03130 Coffea canephora HOM05D007677 ORTHO05D009728 7.7e-58 227.3 142 73.2
Glyma.13G208700 Glycine max HOM05D007677 ORTHO05D009728 7.7e-58 227.3 147 72.8
PGR004G0596 Punica granatum HOM05D007677 ORTHO05D009728 7.7e-58 227.3 139 77.7
VMungo0540G0472 Vigna mungo HOM05D007677 ORTHO05D009728 7.7e-58 227.3 146 72.6
Glyma.15G104100 Glycine max HOM05D007677 ORTHO05D009728 1.0e-57 226.9 147 72.8
Ca_21594_v3 Cicer arietinum L. HOM05D007677 ORTHO05D009728 2.9e-57 225.3 144 72.2
Medtr4g117270 Medicago truncatula HOM05D007677 ORTHO05D009728 3.8e-57 224.9 146 71.2
Lj6g0003442 Lotus japonicus HOM05D007677 ORTHO05D009728 6.5e-57 224.2 152 71.1
arahy.Tifrunner.gnm1.ann1.PDVV0K Arachis hypogaea HOM05D007677 ORTHO05D009728 1.5e-56 223.0 147 72.1
Glyma.07G257100 Glycine max HOM05D007677 ORTHO05D009728 3.2e-56 221.9 147 70.1
PSO407G0046 Papaver somniferum HOM05D007677 ORTHO05D009728 4.2e-56 221.5 154 70.8
TPR.G30685 Trifolium pratense HOM05D007677 ORTHO05D009728 4.2e-56 221.5 149 69.8
arahy.Tifrunner.gnm1.ann1.UI8DPT Arachis hypogaea HOM05D007677 ORTHO05D009728 7.2e-56 220.7 147 72.1
SGA_v2.0_scaffold237G43825 Striga asiatica HOM05D007677 ORTHO05D009728 7.2e-56 220.7 145 69.0
PSO170G6325 Papaver somniferum HOM05D007677 ORTHO05D009728 9.4e-56 220.3 154 70.1
Peaxi162Scf00196g00106 Petunia axillaris HOM05D007677 ORTHO05D009728 9.4e-56 220.3 155 69.0
vmacro08279 Vaccinium macrocarpon HOM05D007677 ORTHO05D009728 9.4e-56 220.3 157 65.0
TAR633G1088 Trochodendron aralioides HOM05D007677 ORTHO05D009728 1.2e-55 219.9 156 67.3
Aqoxy2G03269 Aquilegia oxysepala HOM05D007677 ORTHO05D009728 4.7e-55 218.0 150 68.0
Medtr2g022190 Medicago truncatula HOM05D007677 ORTHO05D009728 4.7e-55 218.0 149 70.5
Ca_00644_v3 Cicer arietinum L. HOM05D007677 ORTHO05D009728 6.1e-55 217.6 149 69.8
TPR.G20115 Trifolium pratense HOM05D007677 ORTHO05D009728 6.1e-55 217.6 140 71.4
Sopen01g031880 Solanum pennellii HOM05D007677 ORTHO05D009728 1.0e-54 216.9 145 69.0
CSS0045125 Camellia sinensis var. sinensis HOM05D007677 ORTHO05D009728 1.4e-54 216.5 159 65.4
Lj6P565T22 Lonicera japonica HOM05D007677 ORTHO05D009728 1.8e-54 216.1 145 71.0
Psat1g183560 Pisum sativum HOM05D007677 ORTHO05D009728 1.8e-54 216.1 149 71.1
Psat4g031560 Pisum sativum HOM05D007677 ORTHO05D009728 1.8e-54 216.1 139 71.9
Oeu037682.1 Olea europaea HOM05D007677 ORTHO05D009728 3.0e-54 215.3 140 70.7
Lalb_Chr18g0056081 Lupinus albus HOM05D007677 ORTHO05D009728 4.0e-54 214.9 143 69.9
Solyc01g080100.3 Solanum lycopersicum HOM05D007677 ORTHO05D009728 5.2e-54 214.5 145 68.3
PGSC0003DMG400033121 Solanum tuberosum HOM05D007677 ORTHO05D009728 1.5e-53 213.0 146 67.1
Migut.G00291 Erythranthe guttata HOM05D007677 ORTHO05D009728 1.6e-50 203.0 141 66.7
Sc13g0003990 Simmondsia chinensis HOM05D007677 ORTHO05D009728 6.5e-49 197.6 140 67.9
CSS0000052 Camellia sinensis var. sinensis HOM05D007677 ORTHO05D009728 1.5e-48 196.4 143 65.7
Nitab4.5_0001247g0090 Nicotiana tabacum HOM05D007677 ORTHO05D009728 6.1e-47 191.0 149 62.4
Dinv38394 Davidia involucrata HOM05D007677 ORTHO05D009728 8.0e-47 190.7 136 68.4
AUR62030087 Chenopodium quinoa HOM05D007677 ORTHO05D007693 5.7e-45 184.5 132 67.4
THA.LOC104820106 Tarenaya hassleriana HOM05D001407 ORTHO05D001314 2.9e-41 172.2 147 56.5
AL3G17000 Arabidopsis lyrata HOM05D007677 ORTHO05D009728 2.1e-39 166.0 135 59.3
BcaNung06667 Brassica carinata HOM05D007677 ORTHO05D009728 4.7e-39 164.9 135 58.5
C05p61090 Brassica napus HOM05D007677 ORTHO05D009728 4.7e-39 164.9 135 58.5
BolC5t34766H Brassica oleracea HOM05D007677 ORTHO05D009728 4.7e-39 164.9 135 58.5
AT3G06145 Arabidopsis thaliana HOM05D007677 ORTHO05D009728 1.0e-38 163.7 135 57.8
BcaC05g30051 Brassica carinata HOM05D007677 ORTHO05D009728 1.4e-38 163.3 135 57.8
CARHR080660 Cardamine hirsuta HOM05D007677 ORTHO05D009728 2.3e-38 162.5 135 58.5
Sp3g05100 Schrenkiella parvula HOM05D007677 ORTHO05D009728 2.3e-38 162.5 135 57.8
A05p41840 Brassica napus HOM05D007677 ORTHO05D009728 3.0e-38 162.2 135 57.0
BraA05t22903Z Brassica rapa HOM05D007677 ORTHO05D009728 3.0e-38 162.2 135 57.0
Carub.0003s0558 Capsella rubella HOM05D007677 ORTHO05D009728 4.0e-38 161.8 135 57.0
Thhalv10021653m.g Eutrema salsugineum HOM05D007677 ORTHO05D009728 4.0e-38 161.8 135 57.8
TAR362G0152 Trochodendron aralioides HOM05D007677 ORTHO05D009728 8.9e-38 160.6 112 68.8
Aa31LG5G16660 Aethionema arabicum HOM05D007677 ORTHO05D009728 2.0e-37 159.5 141 56.0
ATR0626G325 Amborella trichopoda HOM05D007677 ORTHO05D009728 4.9e-36 154.8 132 56.1
SEGI_19260 Sequoiadendron giganteum HOM05D007677 ORTHO05D009728 1.1e-32 143.7 123 57.7
Atru.chr4.2568 Acer truncatum HOM05D007677 ORTHO05D009728 1.2e-31 140.2 80 82.5
SHI00378 Sapria himalayana HOM05D007677 ORTHO05D009728 8.0e-31 137.5 138 49.3
Lsat_1_v5_gn_7_41320 Lactuca sativa HOM05D007677 ORTHO05D009728 1.5e-24 116.7 73 72.6
Potri.010G030701 Populus trichocarpa HOM05D007677 ORTHO05D009728 7.3e-24 114.4 75 72.0
EL10Ac3g06358 Beta vulgaris HOM05D007677 ORTHO05D009728 1.4e-19 100.1 70 71.4
SEGI_22306 Sequoiadendron giganteum HOM05D007677 ORTHO05D009728 1.4e-19 100.1 114 45.6
MBI17_g34455_MAGBIO Magnolia biondii HOM05D002055 ORTHO05D002120 1.9e-19 99.8 61 72.1
SEGI_22697 Sequoiadendron giganteum HOM05D007677 ORTHO05D009728 2.7e-18 95.9 113 44.2


User provided reference genes

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