Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006500.2 Cucumis melo HOM05D004359 ORTHO05D005052 0.0e+00 1432.9 727 100.0
CsaV3_3G012900 Cucumis sativus L. HOM05D004359 ORTHO05D005052 0.0e+00 1398.6 727 97.9
ClCG05G004860 Citrullus lanatus HOM05D004359 ORTHO05D005052 0.0e+00 1382.1 727 96.3
Sed0002276 Sechium edule HOM05D004359 ORTHO05D005052 0.0e+00 1273.8 727 89.5
QL06p000928 Quercus lobata HOM05D004359 ORTHO05D005052 0.0e+00 1090.1 731 75.6
FvH4_4g01230 Fragaria vesca HOM05D004359 ORTHO05D005052 0.0e+00 1079.7 732 75.0
RcHm_v2.0_Chr4g0387781 Rosa chinensis HOM05D004359 ORTHO05D005052 0.0e+00 1077.8 733 75.2
Prupe.1G021300 Prunus persica HOM05D004359 ORTHO05D005052 0.0e+00 1075.5 735 74.8
FAN22G1739 Fragaria x ananassa HOM05D004359 ORTHO05D005052 5.0e-312 1074.3 732 74.2
FAN17G0057 Fragaria x ananassa HOM05D004359 ORTHO05D005052 5.0e-312 1073.5 732 74.3
Cfa008449 Carpinus fangiana HOM05D004359 ORTHO05D005052 9.9e-312 1072.8 730 75.8
GSVIVG01018042001 Vitis vinifera HOM05D004359 ORTHO05D005052 6.0e-311 1070.5 720 75.6
FAN12G0664 Fragaria x ananassa HOM05D004359 ORTHO05D005052 1.7e-310 1068.9 734 74.5
TAR362G1241 Trochodendron aralioides HOM05D004359 ORTHO05D005052 1.5e-306 1055.8 718 74.5
CiPaw.01G195300 Carya illinoinensis HOM05D004359 ORTHO05D005052 1.6e-305 1052.4 729 74.6
MD13G1199900 Malus domestica HOM05D004359 ORTHO05D005052 4.0e-304 1047.7 736 72.8
CiPaw.02G120800 Carya illinoinensis HOM05D004359 ORTHO05D005052 6.4e-302 1040.4 732 74.2
MD16G1199900 Malus domestica HOM05D004359 ORTHO05D005052 1.1e-301 1039.6 736 72.6
Atru.chr4.2362 Acer truncatum HOM05D004359 ORTHO05D005052 1.1e-298 1029.6 728 71.8
Nn6g34169 Nelumbo nucifera HOM05D004359 ORTHO05D005052 6.2e-297 1023.8 722 73.0
Dinv44576 Davidia involucrata HOM05D004359 ORTHO05D005052 2.4e-296 1021.9 701 74.3
Ciclev10004430m.g Citrus clementina HOM05D004359 ORTHO05D005052 4.0e-296 1021.1 730 70.8
CANSAT78G1027 Cannabis sativa HOM05D004359 ORTHO05D005052 3.4e-295 1018.1 730 72.6
Hma1.2p1_0549F.1_g177000 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 1.3e-294 1016.1 729 70.5
Thecc.04G238800 Theobroma cacao HOM05D004359 ORTHO05D005052 2.7e-292 1008.4 731 71.1
CSS0047348 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.5e-292 1008.1 728 70.3
CSS0047775 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.9e-291 1004.6 728 70.2
Cpa.g.sc44.123 Carica papaya HOM05D004359 ORTHO05D005052 5.1e-291 1004.2 701 72.8
Potri.010G081800 Populus trichocarpa HOM05D004359 ORTHO05D005052 8.7e-291 1003.4 715 70.8
Sabra10G0061100 Salix brachista HOM05D004359 ORTHO05D005052 8.7e-291 1003.4 702 72.1
Glyma.20G150500 Glycine max HOM05D004359 ORTHO05D005052 4.3e-290 1001.1 728 71.0
Gohir.A09G219100 Gossypium hirsutum HOM05D004359 ORTHO05D005052 2.1e-289 998.8 731 70.2
PGR004G1328 Punica granatum HOM05D004359 ORTHO05D005052 6.2e-289 997.3 731 69.8
Glyma.10G243900 Glycine max HOM05D004359 ORTHO05D005052 8.2e-289 996.9 700 73.1
Ca_10850_v3 Cicer arietinum L. HOM05D004359 ORTHO05D005052 1.1e-288 996.5 730 71.0
Lalb_Chr06g0160731 Lupinus albus HOM05D004359 ORTHO05D005052 3.1e-288 995.0 731 70.9
Cc03_g04290 Coffea canephora HOM05D004359 ORTHO05D005052 6.9e-288 993.8 729 69.4
Phvul.007G061900 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 6.9e-288 993.8 728 69.9
Actinidia04510 Actinidia chinensis HOM05D004359 ORTHO05D005052 1.3e-286 989.6 752 68.2
TPR.G26109 Trifolium pratense HOM05D004359 ORTHO05D005052 1.7e-286 989.2 730 69.7
Gorai.006G242500 Gossypium raimondii HOM05D004359 ORTHO05D005052 2.9e-286 988.4 759 67.9
VMungo0720G0936 Vigna mungo HOM05D004359 ORTHO05D005052 4.9e-286 987.6 728 69.1
Manes.03G173100 Manihot esculenta HOM05D004359 ORTHO05D005052 8.4e-286 986.9 715 70.1
arahy.Tifrunner.gnm1.ann1.4267PD Arachis hypogaea HOM05D004359 ORTHO05D005052 2.5e-285 985.3 728 69.8
Lj5g0004472 Lotus japonicus HOM05D004359 ORTHO05D005052 1.2e-284 983.0 730 69.7
arahy.Tifrunner.gnm1.ann1.GV821P Arachis hypogaea HOM05D004359 ORTHO05D005052 4.6e-284 981.1 742 68.6
MSTRG.4062 Avicennia marina HOM05D004359 ORTHO05D005052 1.8e-283 979.2 723 69.0
Medtr1g102840 Medicago truncatula HOM05D004359 ORTHO05D005052 3.0e-283 978.4 730 69.5
Psat6g204080 Pisum sativum HOM05D004359 ORTHO05D005052 5.1e-283 977.6 730 69.3
COL.COLO4_21565 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.5e-282 976.1 683 73.8
Oeu064246.1 Olea europaea HOM05D004359 ORTHO05D005052 1.9e-282 975.7 700 69.1
Aqoxy5G00400 Aquilegia oxysepala HOM05D004359 ORTHO05D005052 4.3e-282 974.5 715 70.3
CAN.G1437.8 Capsicum annuum HOM05D004359 ORTHO05D005052 4.3e-282 974.5 720 68.3
PSO170G6248 Papaver somniferum HOM05D004359 ORTHO05D005052 2.2e-281 972.2 720 69.4
vmacro08371 Vaccinium macrocarpon HOM05D004359 ORTHO05D005052 2.8e-281 971.8 737 68.1
PSO210G2230 Papaver somniferum HOM05D004359 ORTHO05D005052 1.1e-280 969.9 721 69.6
THA.LOC104826064 Tarenaya hassleriana HOM05D004359 ORTHO05D005052 4.5e-279 964.5 733 66.3
ATR0665G111 Amborella trichopoda HOM05D004359 ORTHO05D005052 5.9e-279 964.1 724 68.4
TWI73G1293 Tripterygium wilfordii HOM05D004359 ORTHO05D005052 5.9e-279 964.1 709 69.5
Lj3C728G3 Lonicera japonica HOM05D004359 ORTHO05D005052 1.0e-278 963.4 729 68.3
Lsat_1_v5_gn_5_104320 Lactuca sativa HOM05D004359 ORTHO05D005052 1.7e-278 962.6 699 69.0
PGSC0003DMG400006446 Solanum tuberosum HOM05D004359 ORTHO05D005052 2.2e-278 962.2 699 69.4
Haze_11233 Corylus avellana HOM05D004359 ORTHO05D005052 3.8e-278 961.4 730 70.1
Rhsim04G0197200 Rhododendron simsii HOM05D004359 ORTHO05D005052 4.6e-276 954.5 807 62.7
Solyc09g082680.3 Solanum lycopersicum HOM05D004359 ORTHO05D005052 1.0e-275 953.4 699 68.4
Actinidia40118 Actinidia chinensis HOM05D004359 ORTHO05D005052 2.3e-275 952.2 727 68.1
Sopen09g031540 Solanum pennellii HOM05D004359 ORTHO05D005052 3.0e-275 951.8 726 66.4
HanXRQChr10g0294741 Helianthus annuus HOM05D004359 ORTHO05D005052 3.9e-275 951.4 699 68.2
Lalb_Chr03g0037471 Lupinus albus HOM05D004359 ORTHO05D005052 1.7e-273 946.0 731 66.9
Sp1g03020 Schrenkiella parvula HOM05D004359 ORTHO05D005052 2.2e-273 945.7 708 67.8
Carub.0001s0339 Capsella rubella HOM05D004359 ORTHO05D005052 4.8e-273 944.5 735 66.4
Migut.G00384 Erythranthe guttata HOM05D004359 ORTHO05D005052 4.8e-273 944.5 725 65.7
CDE07G0702 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 3.1e-272 941.8 711 67.4
Aa31LG1G20640 Aethionema arabicum HOM05D004359 ORTHO05D005052 2.6e-271 938.7 713 65.9
Glyma.10G003000 Glycine max HOM05D004359 ORTHO05D005052 1.3e-270 936.4 703 68.4
SGA_v2.0_scaffold191G40427 Striga asiatica HOM05D004359 ORTHO05D005052 1.7e-270 936.0 738 66.1
BcaC05g24464 Brassica carinata HOM05D004359 ORTHO05D005052 6.5e-270 934.1 737 65.9
Thhalv10006925m.g Eutrema salsugineum HOM05D004359 ORTHO05D005052 6.5e-270 934.1 731 65.7
HanXRQChr16g0513791 Helianthus annuus HOM05D004359 ORTHO05D005052 1.4e-269 932.9 718 65.6
Migut.N00211 Erythranthe guttata HOM05D004359 ORTHO05D005052 2.7e-268 928.7 714 67.4
ECA234G1583 Erigeron canadensis HOM05D004359 ORTHO05D005052 4.7e-268 927.9 716 66.1
Glyma.15G201600 Glycine max HOM05D004359 ORTHO05D005052 4.7e-268 927.9 706 68.0
DCAR_030686 Daucus carota HOM05D004359 ORTHO05D005052 1.0e-267 926.8 718 65.3
Os01g0773100 Oryza sativa ssp. japonica HOM05D004359 ORTHO05D005052 1.0e-267 926.8 705 66.8
BolC5t29020H Brassica oleracea HOM05D004359 ORTHO05D005052 1.1e-266 923.3 738 65.2
Sc19g0003940 Simmondsia chinensis HOM05D004359 ORTHO05D005052 1.5e-266 922.9 681 68.7
BcaC05g24462 Brassica carinata HOM05D004359 ORTHO05D005052 3.3e-266 921.8 738 65.2
CARHR003530 Cardamine hirsuta HOM05D004359 ORTHO05D005052 9.7e-266 920.2 731 65.5
C05p02410 Brassica napus HOM05D004359 ORTHO05D005052 1.7e-265 919.5 738 65.2
A08p37060 Brassica napus HOM05D004359 ORTHO05D005052 3.7e-265 918.3 730 65.2
AL1G13800 Arabidopsis lyrata HOM05D004359 ORTHO05D005052 1.5e-263 912.9 735 65.6
Gohir.D09G221300 Gossypium hirsutum HOM05D004359 ORTHO05D005052 7.7e-263 910.6 655 71.8
SalBow2G3046 Salvia bowleyana HOM05D004359 ORTHO05D005052 2.9e-262 908.7 731 64.7
EL10Ac3g06499 Beta vulgaris HOM05D004359 ORTHO05D005052 2.1e-260 902.5 712 65.3
Phvul.007G278300 Phaseolus vulgaris HOM05D004359 ORTHO05D005052 4.7e-260 901.4 704 66.6
SalBow3G0915 Salvia bowleyana HOM05D004359 ORTHO05D005052 6.7e-259 897.5 730 63.2
MSTRG.21878 Avicennia marina HOM05D004359 ORTHO05D005052 8.8e-259 897.1 704 65.1
BolC8t46894H Brassica oleracea HOM05D004359 ORTHO05D005052 2.4e-256 889.0 740 63.5
Duzib052G0975 Durio zibethinus HOM05D004359 ORTHO05D005052 7.0e-256 887.5 665 69.9
Peaxi162Scf00316g00517 Petunia axillaris HOM05D004359 ORTHO05D005052 1.6e-255 886.3 726 62.4
DCAR_002367 Daucus carota HOM05D004359 ORTHO05D005052 7.2e-253 877.5 703 63.4
SGA_v2.0_scaffold79G25594 Striga asiatica HOM05D004359 ORTHO05D005052 4.7e-252 874.8 718 64.6
Nitab4.5_0002541g0010 Nicotiana tabacum HOM05D004359 ORTHO05D005052 8.0e-252 874.0 722 62.7
AUR62038653 Chenopodium quinoa HOM05D004359 ORTHO05D005052 4.4e-250 868.2 730 61.1
Oeu064245.1 Olea europaea HOM05D004359 ORTHO05D005052 4.4e-250 868.2 675 65.6
Nitab4.5_0000090g0250 Nicotiana tabacum HOM05D004359 ORTHO05D005052 2.0e-247 859.4 704 63.4
C08p00930 Brassica napus HOM05D004359 ORTHO05D005052 1.7e-246 856.3 733 62.8
Zm00001eb151770 Zea mays HOM05D004359 ORTHO05D005052 1.7e-246 856.3 707 63.1
BcaC07g36931 Brassica carinata HOM05D004359 ORTHO05D005052 5.5e-245 851.3 737 62.6
DCAR_027243 Daucus carota HOM05D004359 ORTHO05D005052 1.2e-244 850.1 638 69.0
AUR62032000 Chenopodium quinoa HOM05D004359 ORTHO05D005052 4.7e-244 848.2 729 60.6
SEGI_41464 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 8.0e-244 847.4 707 62.7
VMungo0720G0919 Vigna mungo HOM05D004359 ORTHO05D005052 2.8e-241 839.0 702 62.5
Duzib212G0656 Durio zibethinus HOM05D004359 ORTHO05D005052 5.5e-237 824.7 729 60.5
Eucgr.H03411 Eucalyptus grandis HOM05D004359 ORTHO05D005052 5.8e-226 788.1 579 70.1
Ah.04g154140 Amaranthus hybridus HOM05D004359 ORTHO05D005052 6.6e-222 774.6 729 55.6
Dinv14046 Davidia involucrata HOM05D004359 ORTHO05D005052 6.6e-222 774.6 611 66.1
AT1G04200 Arabidopsis thaliana HOM05D004359 ORTHO05D005052 1.5e-218 763.5 615 66.3
CDE04G1738 Ceratophyllum demersum HOM05D004359 ORTHO05D005052 7.5e-218 761.1 716 57.8
A10p02630 Brassica napus HOM05D004359 ORTHO05D005052 1.4e-216 756.9 727 57.5
HPP92_015636 Vanilla planifolia HOM05D004359 ORTHO05D005052 9.2e-208 727.6 574 66.0
Lj6A646G73 Lonicera japonica HOM05D004359 ORTHO05D005052 1.0e-206 724.2 646 61.6
CSS0018932 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 3.9e-206 722.2 549 70.1
CSS0027981 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.7e-201 706.8 572 65.7
SMO340G0218 Selaginella moellendorffii HOM05D004359 ORTHO05D005052 2.7e-199 699.5 736 52.7
Zm00001eb370110 Zea mays HOM05D004359 ORTHO05D005052 2.3e-198 696.4 493 71.0
CSS0020739 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 6.4e-193 678.3 565 64.8
AagrBONN_evm.TU.Sc2ySwM_228.2874 Anthoceros agrestis HOM05D004359 ORTHO05D005052 3.9e-190 669.1 650 55.4
unitig_736.g22459 Utricularia gibba HOM05D004359 ORTHO05D005052 2.8e-180 636.3 713 51.5
Mapoly0021s0008 Marchantia polymorpha HOM05D004359 ORTHO05D005052 1.1e-171 607.8 706 48.9
AUR62033626 Chenopodium quinoa HOM05D004359 ORTHO05D005052 8.0e-143 511.9 606 49.8
CBR_g41568 Chara braunii HOM05D004359 ORTHO05D005052 1.8e-142 510.8 870 39.2
SEGI_08230 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 5.2e-142 509.2 337 74.5
Manes.15G033000 Manihot esculenta HOM05D004359 ORTHO05D005052 1.5e-125 454.5 445 57.5
CSS0049416 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 1.7e-108 397.9 261 75.1
CSS0043956 Camellia sinensis var. sinensis HOM05D004359 ORTHO05D005052 2.8e-103 380.6 259 73.7
SHI00527 Sapria himalayana HOM05D004359 ORTHO05D005052 2.1e-98 364.4 365 53.4
BcaC06g35467 Brassica carinata HOM05D004359 ORTHO05D005052 3.4e-85 320.5 322 53.4
unitig_899.g14876 Utricularia gibba HOM05D004359 ORTHO05D005052 3.3e-80 303.9 515 37.7
BolC5t32353H Brassica oleracea HOM05D004359 ORTHO05D005052 7.6e-61 239.6 285 47.0
Sabra08G0120100 Salix brachista HOM05D004359 ORTHO05D005052 6.7e-57 226.5 547 34.4
FAN17G0101 Fragaria x ananassa HOM05D004359 ORTHO05D005052 4.1e-54 217.2 149 70.5
SEGI_13286 Sequoiadendron giganteum HOM05D004359 ORTHO05D005052 1.8e-49 201.8 185 56.2
SHI00526 Sapria himalayana HOM05D004359 ORTHO05D005052 2.5e-40 171.4 122 72.1
BolC2t09698H Brassica oleracea HOM05D004359 ORTHO05D005052 3.3e-40 171.0 312 36.9
RcHm_v2.0_Chr4g0393601 Rosa chinensis HOM05D004359 ORTHO05D005052 9.7e-40 169.5 138 68.1
BcaC03g15924 Brassica carinata HOM05D004359 ORTHO05D005052 5.9e-37 160.2 322 35.1
TPR.G734 Trifolium pratense HOM05D004359 ORTHO05D005052 3.9e-33 147.5 177 48.6
C05p36300 Brassica napus HOM05D004359 ORTHO05D005052 7.4e-32 143.3 125 56.8
BcaC05g27642 Brassica carinata HOM05D004359 ORTHO05D000212 4.8e-31 140.6 156 50.6
SHI00525 Sapria himalayana HOM05D004359 ORTHO05D005052 1.1e-27 129.4 160 44.4
Phvul.007G263800 Phaseolus vulgaris HOM05D004359 ORTHO05D050299 1.5e-24 119.0 317 32.8
Sed0019342 Sechium edule HOM05D004359 ORTHO05D050299 2.0e-21 108.6 57 93.0
RcHm_v2.0_Chr4g0393591 Rosa chinensis HOM05D004359 ORTHO05D005052 2.2e-20 105.1 78 64.1
FAN13G0820 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.5e-19 102.4 79 60.8
FAN13G1580 Fragaria x ananassa HOM05D002804 ORTHO05D003755 1.5e-19 102.4 79 60.8
RcHm_v2.0_Chr4g0393611 Rosa chinensis HOM05D004359 ORTHO05D005052 4.2e-19 100.9 88 60.2
Hma1.2p1_0549F.1_g177020 Hydrangea macrophylla HOM05D004359 ORTHO05D005052 2.7e-18 98.2 121 47.1
Glyma.19G081300 Glycine max HOM05D004359 ORTHO05D005052 2.0e-16 92.0 85 54.1
COL.COLO4_15960 Corchorus olitorius HOM05D004359 ORTHO05D005052 2.1e-10 72.0 48 72.9
COL.COLO4_21093 Corchorus olitorius HOM05D004359 ORTHO05D005052 1.8e-09 68.9 37 86.5
HPP92_015629 Vanilla planifolia HOM05D004359 ORTHO05D005052 1.8e-09 68.9 64 50.0
TPR.G7706 Trifolium pratense HOM05D281668 ORTHO05D412659 2.4e-06 58.5 111 33.3
MCO01G401 Micromonas commoda HOM05D004359 ORTHO05D005052 5.4e-06 57.4 291 25.4


User provided reference genes

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