Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006459.2 Cucumis melo HOM05D004833 ORTHO05D005671 8.0e-233 810.1 410 100.0
CsaV3_3G012480 Cucumis sativus L. HOM05D004833 ORTHO05D005671 1.1e-205 719.9 410 90.2
ClCG05G004520 Citrullus lanatus HOM05D004833 ORTHO05D005671 4.3e-194 681.4 408 86.0
Sed0021810 Sechium edule HOM05D004833 ORTHO05D005671 2.2e-137 493.0 409 67.2
Cfa008364 Carpinus fangiana HOM05D004833 ORTHO05D005671 3.4e-58 229.9 511 35.8
CiPaw.02G115600 Carya illinoinensis HOM05D004833 ORTHO05D005671 5.4e-56 222.6 405 39.8
Potri.010G074900 Populus trichocarpa HOM05D004833 ORTHO05D005671 5.4e-56 222.6 413 39.0
QL06p016027 Quercus lobata HOM05D004833 ORTHO05D005671 7.9e-55 218.8 462 37.2
Manes.03G168000 Manihot esculenta HOM05D004833 ORTHO05D005671 4.3e-53 213.0 428 39.0
Dinv29897 Davidia involucrata HOM05D004833 ORTHO05D005671 9.0e-51 205.3 449 35.2
Thecc.04G248100 Theobroma cacao HOM05D004833 ORTHO05D005671 4.5e-50 203.0 439 36.9
Sabra10G0033900 Salix brachista HOM05D004833 ORTHO05D005671 1.7e-49 201.1 413 36.8
Prupe.1G033600 Prunus persica HOM05D004833 ORTHO05D005671 2.2e-49 200.7 442 36.4
FAN17G0043 Fragaria x ananassa HOM05D004833 ORTHO05D005671 3.2e-48 196.8 471 34.2
MD16G1211500 Malus domestica HOM05D004833 ORTHO05D005671 3.2e-48 196.8 407 37.6
PGR004G1107 Punica granatum HOM05D004833 ORTHO05D005671 3.2e-48 196.8 463 34.6
FAN17G0464 Fragaria x ananassa HOM05D004833 ORTHO05D005671 1.2e-47 194.9 464 34.9
CSS0034891 Camellia sinensis var. sinensis HOM05D004833 ORTHO05D005671 1.6e-47 194.5 458 35.8
Eucgr.G02729 Eucalyptus grandis HOM05D004833 ORTHO05D005671 3.5e-47 193.4 433 35.3
CANSAT78G0301 Cannabis sativa HOM05D004833 ORTHO05D005671 2.3e-46 190.7 409 34.5
RcHm_v2.0_Chr4g0391131 Rosa chinensis HOM05D004833 ORTHO05D005671 2.8e-44 183.7 470 34.9
FvH4_4g02980 Fragaria vesca HOM05D004833 ORTHO05D005671 4.8e-44 183.0 503 31.2
RcHm_v2.0_Chr7g0224291 Rosa chinensis HOM05D004833 ORTHO05D005671 6.9e-43 179.1 413 34.9
Actinidia40079 Actinidia chinensis HOM05D004833 ORTHO05D005671 1.5e-42 177.9 463 32.2
TWI09G0514 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 1.5e-42 177.9 406 34.2
FAN28G1505 Fragaria x ananassa HOM05D004833 ORTHO05D005671 2.6e-42 177.2 523 30.2
Gorai.005G047200 Gossypium raimondii HOM05D004833 ORTHO05D005671 2.6e-42 177.2 411 34.3
FAN12G1135 Fragaria x ananassa HOM05D004833 ORTHO05D005671 4.5e-42 176.4 514 31.9
arahy.Tifrunner.gnm1.ann1.DI6KST Arachis hypogaea HOM05D004833 ORTHO05D005671 1.0e-41 175.3 472 31.4
Hma1.2p1_0310F.1_g120780 Hydrangea macrophylla HOM05D004833 ORTHO05D005671 2.2e-41 174.1 500 30.4
QL04p071625 Quercus lobata HOM05D004833 ORTHO05D005671 2.2e-41 174.1 414 34.3
TWI53G1508 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 2.2e-41 174.1 413 33.7
TWI53G1633 Tripterygium wilfordii HOM05D004833 ORTHO05D005671 2.2e-41 174.1 413 33.7
arahy.Tifrunner.gnm1.ann1.CY5RP0 Arachis hypogaea HOM05D004833 ORTHO05D005671 3.8e-41 173.3 481 30.8
VMungo0251G0345 Vigna mungo HOM05D004833 ORTHO05D005671 3.8e-41 173.3 466 33.7
Cpa.g.sc44.108 Carica papaya HOM05D004833 ORTHO05D005671 4.9e-41 172.9 430 32.3
RcHm_v2.0_Chr7g0211851 Rosa chinensis HOM05D004833 ORTHO05D005671 8.4e-41 172.2 411 33.6
Nn4g25548 Nelumbo nucifera HOM05D004833 ORTHO05D005671 3.2e-40 170.2 464 30.4
Ciclev10004978m.g Citrus clementina HOM05D004833 ORTHO05D005671 4.2e-40 169.9 465 32.3
Gohir.D02G042900 Gossypium hirsutum HOM05D004833 ORTHO05D005671 9.3e-40 168.7 402 34.6
Rhsim11G0181500 Rhododendron simsii HOM05D004833 ORTHO05D005671 1.6e-39 167.9 433 33.5
Phvul.002G328500 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 2.1e-39 167.5 408 32.8
MSTRG.24695 Avicennia marina HOM05D004833 ORTHO05D005671 2.7e-39 167.2 470 32.8
AT4G14490 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 3.5e-39 166.8 415 32.0
Ciclev10005174m.g Citrus clementina HOM05D004833 ORTHO05D005671 6.0e-39 166.0 412 34.7
Rhsim04G0155000 Rhododendron simsii HOM05D004833 ORTHO05D005671 6.0e-39 166.0 449 32.5
Duzib212G0317 Durio zibethinus HOM05D004833 ORTHO05D005671 2.3e-38 164.1 411 33.8
Oeu002595.1 Olea europaea HOM05D004833 ORTHO05D005671 3.0e-38 163.7 466 30.9
COL.COLO4_15806 Corchorus olitorius HOM05D004833 ORTHO05D005671 3.9e-38 163.3 413 32.4
Gohir.A02G036200 Gossypium hirsutum HOM05D004833 ORTHO05D005671 5.1e-38 162.9 402 34.1
Lsat_1_v5_gn_4_144160 Lactuca sativa HOM05D004833 ORTHO05D005671 5.1e-38 162.9 412 33.0
SHI08746 Sapria himalayana HOM05D004833 ORTHO05D005671 1.9e-37 161.0 394 34.5
Aqoxy4G02560 Aquilegia oxysepala HOM05D004833 ORTHO05D005671 4.3e-37 159.8 435 32.9
FAN12G1996 Fragaria x ananassa HOM05D004833 ORTHO05D005671 4.3e-37 159.8 290 41.4
Glyma.07G201900 Glycine max HOM05D004833 ORTHO05D005671 7.4e-37 159.1 475 32.4
BcaC01g04448 Brassica carinata HOM05D004833 ORTHO05D005671 1.3e-36 158.3 475 32.6
HanXRQChr09g0257341 Helianthus annuus HOM05D004833 ORTHO05D005671 1.3e-36 158.3 402 33.1
HanXRQChr05g0145861 Helianthus annuus HOM05D004833 ORTHO05D005671 2.1e-36 157.5 412 32.8
HanXRQChr11g0331421 Helianthus annuus HOM05D004833 ORTHO05D005671 2.1e-36 157.5 412 32.8
TAR633G1100 Trochodendron aralioides HOM05D004833 ORTHO05D005671 2.1e-36 157.5 497 29.6
Medtr4g088240 Medicago truncatula HOM05D004833 ORTHO05D005671 4.8e-36 156.4 409 33.0
DCAR_028835 Daucus carota HOM05D004833 ORTHO05D005671 6.3e-36 156.0 404 32.7
CANSAT25G0083 Cannabis sativa HOM05D004833 ORTHO05D005671 8.2e-36 155.6 402 32.1
TAR362G1060 Trochodendron aralioides HOM05D004833 ORTHO05D005671 1.1e-35 155.2 463 31.3
BraSC141t45625Z Brassica rapa HOM05D004833 ORTHO05D005671 1.8e-35 154.5 465 31.4
BcaC01g04551 Brassica carinata HOM05D004833 ORTHO05D005671 2.4e-35 154.1 445 31.7
BNapus_Darmor_BZH_scaffold_208p00080 Brassica napus HOM05D004833 ORTHO05D005671 6.9e-35 152.5 471 31.6
BcaB04g21413 Brassica carinata HOM05D004833 ORTHO05D005671 9.0e-35 152.1 432 31.9
BraA05t23142Z Brassica rapa HOM05D004833 ORTHO05D005671 2.0e-34 151.0 428 32.5
Duzib151G1051 Durio zibethinus HOM05D004833 ORTHO05D005671 2.0e-34 151.0 402 30.8
THA.LOC104808605 Tarenaya hassleriana HOM05D004833 ORTHO05D005671 2.6e-34 150.6 581 26.5
Migut.N00255 Erythranthe guttata HOM05D004833 ORTHO05D005671 1.0e-33 148.7 463 30.5
MBI19_g03257_MAGBIO Magnolia biondii HOM05D004833 ORTHO05D005671 1.0e-33 148.7 432 32.2
TPR.G14924 Trifolium pratense HOM05D004833 ORTHO05D005671 1.7e-33 147.9 427 30.2
Lj4g0026393 Lotus japonicus HOM05D004833 ORTHO05D005671 5.0e-33 146.4 438 29.0
BcaC09g47698 Brassica carinata HOM05D004833 ORTHO05D005671 1.1e-32 145.2 472 31.1
MD13G1205500 Malus domestica HOM05D004833 ORTHO05D005671 1.1e-32 145.2 412 31.1
Sc25g0004110 Simmondsia chinensis HOM05D004833 ORTHO05D005671 1.1e-32 145.2 508 29.5
BraA03t12461Z Brassica rapa HOM05D005209 ORTHO05D006188 1.4e-32 144.8 462 30.1
Atru.chr4.2164 Acer truncatum HOM05D004833 ORTHO05D005671 1.9e-32 144.4 429 30.1
AL7G41650 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 4.2e-32 143.3 406 33.3
DCAR_024234 Daucus carota HOM05D004833 ORTHO05D005671 4.2e-32 143.3 426 30.3
Carub.0007s2773 Capsella rubella HOM05D004833 ORTHO05D005671 5.5e-32 142.9 423 32.2
Aa31LG8G9600 Aethionema arabicum HOM05D004833 ORTHO05D005671 7.2e-32 142.5 547 27.6
A05p45200 Brassica napus HOM05D004833 ORTHO05D005671 9.3e-32 142.1 412 30.3
BolC1t05907H Brassica oleracea HOM05D004833 ORTHO05D005671 9.3e-32 142.1 472 30.9
SGA_v2.0_scaffold308G48094 Striga asiatica HOM05D004833 ORTHO05D005671 1.2e-31 141.7 422 30.1
PSO210G7662 Papaver somniferum HOM05D004833 ORTHO05D005671 1.6e-31 141.4 456 29.6
C03p40050 Brassica napus HOM05D005209 ORTHO05D006188 6.1e-31 139.4 460 30.0
BolC3t16270H Brassica oleracea HOM05D005209 ORTHO05D006188 6.1e-31 139.4 460 30.0
Sp3g01440 Schrenkiella parvula HOM05D004833 ORTHO05D005671 1.0e-30 138.7 501 29.9
EL10Ac7g16793 Beta vulgaris HOM05D004833 ORTHO05D005671 1.8e-30 137.9 129 53.5
PSO761G0588 Papaver somniferum HOM05D004833 ORTHO05D005671 3.9e-30 136.7 453 30.0
Lalb_Chr05g0218581 Lupinus albus HOM05D004833 ORTHO05D005671 1.9e-29 134.4 436 28.0
Ca_18598_v3 Cicer arietinum L. HOM05D004833 ORTHO05D005671 2.5e-29 134.0 443 29.3
A03p32920 Brassica napus HOM05D004833 ORTHO05D005671 9.7e-29 132.1 489 30.1
CDE09G0593 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 1.6e-28 131.3 430 28.1
Ah.15g090410 Amaranthus hybridus HOM05D004833 ORTHO05D005671 2.2e-28 131.0 135 47.4
Thhalv10020728m.g Eutrema salsugineum HOM05D004833 ORTHO05D005671 2.2e-28 131.0 468 30.6
Glyma.13G174400 Glycine max HOM05D004833 ORTHO05D005671 2.2e-28 131.0 529 26.8
Peaxi162Scf00209g00118 Petunia axillaris HOM05D004833 ORTHO05D005671 3.7e-28 130.2 490 29.2
ECA232G1138 Erigeron canadensis HOM05D004833 ORTHO05D005671 4.8e-28 129.8 151 46.4
BcaC05g30352 Brassica carinata HOM05D004833 ORTHO05D005671 8.2e-28 129.0 433 29.3
unitig_899.g14712 Utricularia gibba HOM05D004833 ORTHO05D005671 1.4e-27 128.3 441 29.7
C09p75700 Brassica napus HOM05D004833 ORTHO05D005671 1.8e-27 127.9 433 29.3
Medtr4g088235 Medicago truncatula HOM05D004833 ORTHO05D005671 1.8e-27 127.9 526 27.2
AT3G02400 Arabidopsis thaliana HOM05D004833 ORTHO05D005671 5.3e-27 126.3 527 26.9
SalBow3G2302 Salvia bowleyana HOM05D004833 ORTHO05D005671 5.3e-27 126.3 420 27.6
Sopen08g026960 Solanum pennellii HOM05D004833 ORTHO05D005671 9.0e-27 125.6 525 25.3
Lj6P658T33 Lonicera japonica HOM05D004833 ORTHO05D005671 1.5e-26 124.8 240 38.3
Medtr8g069140 Medicago truncatula HOM05D004833 ORTHO05D005671 2.6e-26 124.0 502 27.3
CAN.G1178.27 Capsicum annuum HOM05D004833 ORTHO05D005671 4.5e-26 123.2 528 28.0
ECA232G0897 Erigeron canadensis HOM05D004833 ORTHO05D005671 7.7e-26 122.5 148 45.3
Lj4g0009172 Lotus japonicus HOM05D004833 ORTHO05D005671 1.3e-25 121.7 463 26.8
ECA234G1378 Erigeron canadensis HOM05D000038 ORTHO05D000423 6.5e-25 119.4 558 26.5
PGSC0003DMG400004768 Solanum tuberosum HOM05D004833 ORTHO05D005671 8.5e-25 119.0 512 25.2
Psat7g116640 Pisum sativum HOM05D004833 ORTHO05D005671 2.5e-24 117.5 126 49.2
CARHR076370 Cardamine hirsuta HOM05D004833 ORTHO05D005671 4.2e-24 116.7 566 27.9
Nitab4.5_0002289g0040 Nicotiana tabacum HOM05D004833 ORTHO05D005671 4.2e-24 116.7 536 27.1
Aa31LG9G2800 Aethionema arabicum HOM05D004833 ORTHO05D005671 9.4e-24 115.5 160 45.0
Nitab4.5_0001381g0160 Nicotiana tabacum HOM05D004833 ORTHO05D005671 1.2e-23 115.2 544 27.0
Carub.0003s0149 Capsella rubella HOM05D004833 ORTHO05D005671 3.6e-23 113.6 269 35.7
Solyc08g078470.4 Solanum lycopersicum HOM05D004833 ORTHO05D005671 7.9e-23 112.5 205 36.6
ATR0693G179 Amborella trichopoda HOM05D004833 ORTHO05D005671 1.8e-22 111.3 140 44.3
AL3G11690 Arabidopsis lyrata HOM05D004833 ORTHO05D005671 1.8e-22 111.3 394 31.2
CDE02G0054 Ceratophyllum demersum HOM05D004833 ORTHO05D005671 3.0e-22 110.5 425 25.6
HPP92_002667 Vanilla planifolia HOM05D004833 ORTHO05D005671 8.2e-20 102.4 203 36.9
HPP92_014115 Vanilla planifolia HOM05D004833 ORTHO05D005671 1.8e-19 101.3 345 30.4
HPP92_002726 Vanilla planifolia HOM05D004833 ORTHO05D005671 2.4e-19 100.9 124 46.0
unitig_52.g17411 Utricularia gibba HOM05D004833 ORTHO05D005671 9.1e-19 99.0 126 43.7
Zm00001eb215540 Zea mays HOM05D004833 ORTHO05D005671 3.8e-17 93.6 155 38.1
Os03g0728500 Oryza sativa ssp. japonica HOM05D004833 ORTHO05D005671 1.1e-16 92.0 118 43.2
SEGI_17679 Sequoiadendron giganteum HOM05D004833 ORTHO05D005671 1.4e-16 91.7 98 49.0
Cfa008363 Carpinus fangiana HOM05D004833 ORTHO05D005671 7.9e-15 85.9 207 35.7
Zm00001eb056120 Zea mays HOM05D004833 ORTHO05D005671 8.8e-14 82.4 130 39.2
Pp3c19_11080 Physcomitrium patens HOM05D004833 ORTHO05D005671 1.3e-12 78.6 116 40.5
BolC5t35084H Brassica oleracea HOM05D004833 ORTHO05D005671 4.1e-11 73.6 141 40.4
CiPaw.01G189200 Carya illinoinensis HOM05D004833 ORTHO05D005671 3.8e-09 67.0 193 26.4
Actinidia04469 Actinidia chinensis HOM05D004833 ORTHO05D005671 6.5e-09 66.2 44 68.2
Phvul.002G234300 Phaseolus vulgaris HOM05D004833 ORTHO05D005671 6.5e-09 66.2 52 55.8
Pp3c18_4140 Physcomitrium patens HOM05D004833 ORTHO05D005671 6.5e-09 66.2 104 40.4
CBR_g21751 Chara braunii HOM05D004833 ORTHO05D005671 3.2e-08 63.9 101 32.7
Lj6P658T32 Lonicera japonica HOM05D004833 ORTHO05D005671 7.2e-08 62.8 112 33.9
A06p04460 Brassica napus HOM05D010442 ORTHO05D010690 2.1e-07 61.2 54 44.4
BcaC01g04549 Brassica carinata HOM05D004833 ORTHO05D005671 2.7e-07 60.8 48 52.1
PRCOL_00002026 Prasinoderma coloniale HOM05D004833 ORTHO05D005671 2.7e-07 60.8 130 35.4
BcaC08g43040 Brassica carinata HOM05D010442 ORTHO05D010690 6.1e-07 59.7 80 36.2
Cre09.g402350 Chlamydomonas reinhardtii HOM05D004833 ORTHO05D005671 1.0e-06 58.9 104 33.7
BolC6t35423H Brassica oleracea HOM05D010442 ORTHO05D010690 1.4e-06 58.5 108 32.4
Medtr3g092440 Medicago truncatula HOM05D004833 ORTHO05D005671 1.4e-06 58.5 424 23.8
C06p03000 Brassica napus HOM05D010442 ORTHO05D010690 3.0e-06 57.4 120 28.3
Mapoly0067s0089 Marchantia polymorpha HOM05D004833 ORTHO05D005671 5.2e-06 56.6 106 34.9


User provided reference genes

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