Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006423.2 Cucumis melo HOM05D003593 ORTHO05D004064 4.7e-95 351.3 189 100.0
CsaV3_3G012080 Cucumis sativus L. HOM05D003593 ORTHO05D004064 1.3e-89 333.2 184 96.7
ClCG06G013760 Citrullus lanatus HOM05D003593 ORTHO05D004064 8.3e-84 313.9 192 90.1
Ciclev10032601m.g Citrus clementina HOM05D003593 ORTHO05D004064 2.3e-57 226.1 184 66.8
Ciclev10021956m.g Citrus clementina HOM05D003593 ORTHO05D004064 6.6e-57 224.6 184 65.8
Rhsim01G0049400 Rhododendron simsii HOM05D003593 ORTHO05D004064 1.5e-56 223.4 184 66.8
GSVIVG01029263001 Vitis vinifera HOM05D003593 ORTHO05D004064 2.5e-56 222.6 184 67.4
MD13G1238800 Malus domestica HOM05D003593 ORTHO05D004064 5.6e-56 221.5 184 69.0
QL03p003697 Quercus lobata HOM05D003593 ORTHO05D004064 1.6e-55 219.9 186 68.3
Prupe.2G148000 Prunus persica HOM05D003593 ORTHO05D004064 3.6e-55 218.8 184 66.8
QL03p003406 Quercus lobata HOM05D003593 ORTHO05D004064 3.6e-55 218.8 185 68.6
Dinv34117 Davidia involucrata HOM05D003593 ORTHO05D004064 4.7e-55 218.4 185 67.6
RcHm_v2.0_Chr5g0056791 Rosa chinensis HOM05D003593 ORTHO05D004064 8.1e-55 217.6 184 66.3
Potri.018G133700 Populus trichocarpa HOM05D003593 ORTHO05D004064 1.8e-54 216.5 184 65.2
RcHm_v2.0_Chr6g0268981 Rosa chinensis HOM05D003593 ORTHO05D004064 1.8e-54 216.5 184 66.3
FAN20G0230 Fragaria x ananassa HOM05D003593 ORTHO05D004064 2.3e-54 216.1 184 65.8
GSVIVG01033604001 Vitis vinifera HOM05D003593 ORTHO05D004064 2.3e-54 216.1 184 64.7
GSVIVG01025934001 Vitis vinifera HOM05D003593 ORTHO05D004064 3.1e-54 215.7 184 64.7
FAN15G1423 Fragaria x ananassa HOM05D003593 ORTHO05D004064 4.0e-54 215.3 184 65.8
FvH4_2g10880 Fragaria vesca HOM05D003593 ORTHO05D004064 1.5e-53 213.4 184 65.2
Sed0017744 Sechium edule HOM05D003593 ORTHO05D004064 2.0e-53 213.0 184 69.6
Prupe.1G071200 Prunus persica HOM05D003593 ORTHO05D004064 3.4e-53 212.2 184 67.4
Atru.chr1.1670 Acer truncatum HOM05D003593 ORTHO05D004064 5.8e-53 211.5 212 58.0
FAN24G3005 Fragaria x ananassa HOM05D003593 ORTHO05D004064 7.5e-53 211.1 184 64.7
Gohir.D10G156600 Gossypium hirsutum HOM05D003593 ORTHO05D004064 9.9e-53 210.7 184 62.0
Gorai.011G174800 Gossypium raimondii HOM05D003593 ORTHO05D004064 9.9e-53 210.7 184 62.0
Eucgr.F03860 Eucalyptus grandis HOM05D003593 ORTHO05D004064 1.3e-52 210.3 186 65.1
Gohir.A10G111600 Gossypium hirsutum HOM05D003593 ORTHO05D004064 1.3e-52 210.3 184 62.0
Sabra18G0113300 Salix brachista HOM05D003593 ORTHO05D004064 2.2e-52 209.5 184 63.0
Actinidia21188 Actinidia chinensis HOM05D003593 ORTHO05D004064 2.9e-52 209.1 184 64.7
Rhsim01G0266500 Rhododendron simsii HOM05D003593 ORTHO05D004064 2.9e-52 209.1 184 63.6
Cpa.g.sc103.74 Carica papaya HOM05D003593 ORTHO05D004064 8.3e-52 207.6 189 64.0
CiPaw.07G199700 Carya illinoinensis HOM05D003593 ORTHO05D004064 1.4e-51 206.8 186 64.5
Medtr8g027710 Medicago truncatula HOM05D003593 ORTHO05D004064 1.9e-51 206.5 184 65.2
THA.LOC104810051 Tarenaya hassleriana HOM05D003593 ORTHO05D004064 1.9e-51 206.5 185 64.9
CSS0041369 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 2.4e-51 206.1 184 62.0
Lj4g0003900 Lotus japonicus HOM05D003593 ORTHO05D004064 3.2e-51 205.7 184 64.7
arahy.Tifrunner.gnm1.ann1.PB4QPE Arachis hypogaea HOM05D003593 ORTHO05D004064 4.1e-51 205.3 185 64.3
arahy.Tifrunner.gnm1.ann1.HDC0J8 Arachis hypogaea HOM05D003593 ORTHO05D004064 5.4e-51 204.9 185 64.3
Duzib068G0242 Durio zibethinus HOM05D003593 ORTHO05D004064 5.4e-51 204.9 184 63.6
Psat1g089640 Pisum sativum HOM05D003593 ORTHO05D004064 7.1e-51 204.5 184 64.7
Ca_21268_v3 Cicer arietinum L. HOM05D003593 ORTHO05D004064 9.2e-51 204.1 184 62.5
COL.COLO4_13717 Corchorus olitorius HOM05D003593 ORTHO05D004064 9.2e-51 204.1 184 62.0
Lalb_Chr12g0199721 Lupinus albus HOM05D003593 ORTHO05D004064 9.2e-51 204.1 175 65.1
TWI39G0804 Tripterygium wilfordii HOM05D003593 ORTHO05D004064 9.2e-51 204.1 188 62.2
MSTRG.21503 Avicennia marina HOM05D003593 ORTHO05D004064 1.2e-50 203.8 185 64.3
FAN14G2581 Fragaria x ananassa HOM05D003593 ORTHO05D004064 1.2e-50 203.8 183 63.4
Glyma.17G056700 Glycine max HOM05D003593 ORTHO05D004064 1.2e-50 203.8 184 63.6
Lj1C63T22 Lonicera japonica HOM05D003593 ORTHO05D004064 1.2e-50 203.8 183 61.7
PGR142G0083 Punica granatum HOM05D003593 ORTHO05D004064 1.6e-50 203.4 184 62.5
QL02p059634 Quercus lobata HOM05D003593 ORTHO05D004064 1.6e-50 203.4 214 58.9
THA.LOC104810053 Tarenaya hassleriana HOM05D003593 ORTHO05D004064 3.5e-50 202.2 185 64.9
CiPaw.08G030900 Carya illinoinensis HOM05D003593 ORTHO05D004064 4.6e-50 201.8 187 62.0
Nn8g40907 Nelumbo nucifera HOM05D003593 ORTHO05D004064 4.6e-50 201.8 184 64.1
VMungo1215G1259 Vigna mungo HOM05D003593 ORTHO05D004064 4.6e-50 201.8 184 62.0
MSTRG.18306 Avicennia marina HOM05D003593 ORTHO05D004064 7.8e-50 201.1 185 65.9
Cc07_g18270 Coffea canephora HOM05D003593 ORTHO05D004064 1.0e-49 200.7 186 61.3
Thecc.09G252700 Theobroma cacao HOM05D003593 ORTHO05D004064 1.0e-49 200.7 184 61.4
TPR.G5405 Trifolium pratense HOM05D003593 ORTHO05D004064 1.0e-49 200.7 185 64.9
CANSAT01G0027 Cannabis sativa HOM05D003593 ORTHO05D004064 1.3e-49 200.3 184 63.6
Medtr4g126960 Medicago truncatula HOM05D003593 ORTHO05D004064 1.7e-49 199.9 185 64.9
Nitab4.5_0010661g0020 Nicotiana tabacum HOM05D003593 ORTHO05D004064 2.3e-49 199.5 184 61.4
Glyma.13G102300 Glycine max HOM05D003593 ORTHO05D004064 3.0e-49 199.1 191 59.7
Phvul.003G138700 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 3.0e-49 199.1 185 61.6
Peaxi162Scf00195g00123 Petunia axillaris HOM05D003593 ORTHO05D004064 3.9e-49 198.7 186 62.9
Glyma.14G032100 Glycine max HOM05D003593 ORTHO05D004064 5.1e-49 198.4 184 62.0
AUR62035376 Chenopodium quinoa HOM05D003593 ORTHO05D004064 6.6e-49 198.0 184 62.5
Migut.D00405 Erythranthe guttata HOM05D003593 ORTHO05D004064 6.6e-49 198.0 186 62.9
Cfa013477 Carpinus fangiana HOM05D003593 ORTHO05D004064 8.6e-49 197.6 188 61.2
HanXRQChr04g0113781 Helianthus annuus HOM05D003593 ORTHO05D004064 1.1e-48 197.2 185 62.7
Sed0025908 Sechium edule HOM05D003593 ORTHO05D004064 1.1e-48 197.2 136 80.9
AUR62029138 Chenopodium quinoa HOM05D003593 ORTHO05D004064 1.5e-48 196.8 184 60.3
Phvul.003G138826 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 1.5e-48 196.8 185 61.1
Phvul.003G139226 Phaseolus vulgaris HOM05D003593 ORTHO05D004064 1.5e-48 196.8 185 61.1
Psat2g189400 Pisum sativum HOM05D003593 ORTHO05D004064 1.9e-48 196.4 184 62.0
CAN.G1497.5 Capsicum annuum HOM05D003593 ORTHO05D004064 3.3e-48 195.7 185 61.1
Lsat_1_v5_gn_8_91320 Lactuca sativa HOM05D003593 ORTHO05D004064 3.3e-48 195.7 186 62.4
FAN02G4054 Fragaria x ananassa HOM05D003593 ORTHO05D004064 4.3e-48 195.3 172 65.1
FAN05G2468 Fragaria x ananassa HOM05D003593 ORTHO05D004064 4.3e-48 195.3 173 64.7
ECA236G3417 Erigeron canadensis HOM05D003593 ORTHO05D004064 5.6e-48 194.9 185 62.2
FAN09G1792 Fragaria x ananassa HOM05D003593 ORTHO05D004064 7.3e-48 194.5 171 64.9
FAN09G2125 Fragaria x ananassa HOM05D003593 ORTHO05D004064 7.3e-48 194.5 171 64.9
FAN09G2587 Fragaria x ananassa HOM05D003593 ORTHO05D004064 7.3e-48 194.5 171 64.9
Hma1.2p1_1219F.1_g267880 Hydrangea macrophylla HOM05D003593 ORTHO05D004064 7.3e-48 194.5 173 64.7
CARHR165650 Cardamine hirsuta HOM05D003593 ORTHO05D004064 9.5e-48 194.1 184 59.2
Solyc02g069380.3 Solanum lycopersicum HOM05D003593 ORTHO05D004064 1.2e-47 193.7 185 60.5
MD08G1104600 Malus domestica HOM05D003593 ORTHO05D004064 1.6e-47 193.4 219 56.6
Nitab4.5_0000630g0070 Nicotiana tabacum HOM05D003593 ORTHO05D004064 1.6e-47 193.4 184 59.8
CAN.G675.9 Capsicum annuum HOM05D003593 ORTHO05D004064 2.1e-47 193.0 185 63.8
Hma1.2p1_0571F.1_g180780 Hydrangea macrophylla HOM05D003593 ORTHO05D004064 2.1e-47 193.0 170 64.7
PSO063G1703 Papaver somniferum HOM05D003593 ORTHO05D004064 2.1e-47 193.0 182 62.6
Hund02205 Selenicereus undatus HOM05D003593 ORTHO05D004064 2.1e-47 193.0 184 60.9
FvH4_6g47540 Fragaria vesca HOM05D003593 ORTHO05D004064 3.6e-47 192.2 173 63.6
TPR.G16420 Trifolium pratense HOM05D003593 ORTHO05D004064 6.2e-47 191.4 185 60.0
Carub.0003s3082 Capsella rubella HOM05D003593 ORTHO05D004064 8.1e-47 191.0 184 58.2
Sp1g35080 Schrenkiella parvula HOM05D003593 ORTHO05D004064 1.8e-46 189.9 184 58.7
CSS0006561 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 2.4e-46 189.5 211 55.5
Sopen02g013070 Solanum pennellii HOM05D003593 ORTHO05D004064 2.4e-46 189.5 185 60.0
AL5G36800 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 3.1e-46 189.1 184 58.7
AT3G55600 Arabidopsis thaliana HOM05D003593 ORTHO05D004064 4.0e-46 188.7 184 58.2
PSO782G1623 Papaver somniferum HOM05D003593 ORTHO05D004064 8.9e-46 187.6 182 62.1
Sc03g0009620 Simmondsia chinensis HOM05D003593 ORTHO05D004064 1.5e-45 186.8 193 57.5
BolC8t50717H Brassica oleracea HOM05D003593 ORTHO05D004064 5.8e-45 184.9 187 57.8
unitig_22.g5286 Utricularia gibba HOM05D003593 ORTHO05D004064 5.8e-45 184.9 184 57.1
MBI14_g31143_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 7.6e-45 184.5 186 57.5
EL10Ac5g11509 Beta vulgaris HOM05D003593 ORTHO05D004064 9.9e-45 184.1 184 60.3
BcaC07g39887 Brassica carinata HOM05D002600 ORTHO05D003013 9.9e-45 184.1 187 57.2
Thhalv10011761m.g Eutrema salsugineum HOM05D003593 ORTHO05D004064 9.9e-45 184.1 184 56.5
vmacro03823 Vaccinium macrocarpon HOM05D003593 ORTHO05D004064 1.3e-44 183.7 266 45.1
Aqoxy5G00845 Aquilegia oxysepala HOM05D003593 ORTHO05D004064 1.7e-44 183.3 184 59.8
Thhalv10010672m.g Eutrema salsugineum HOM05D003593 ORTHO05D004064 1.7e-44 183.3 184 57.1
AUR62015608 Chenopodium quinoa HOM05D003593 ORTHO05D004064 2.2e-44 183.0 191 57.6
CSS0033341 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 3.8e-44 182.2 185 61.1
CSS0039493 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 3.8e-44 182.2 185 61.1
Oeu035605.1 Olea europaea HOM05D003593 ORTHO05D004064 6.4e-44 181.4 185 58.9
SalBow4G0244 Salvia bowleyana HOM05D003593 ORTHO05D004064 6.4e-44 181.4 184 58.7
A09p48590 Brassica napus HOM05D003593 ORTHO05D004064 8.4e-44 181.0 185 56.8
BraA09t40311Z Brassica rapa HOM05D003593 ORTHO05D004064 8.4e-44 181.0 185 56.8
Sp5g06880 Schrenkiella parvula HOM05D003593 ORTHO05D004064 8.4e-44 181.0 184 55.4
C08p30920 Brassica napus HOM05D003593 ORTHO05D004064 2.4e-43 179.5 189 56.1
Peaxi162Scf00956g00310 Petunia axillaris HOM05D003593 ORTHO05D004064 2.4e-43 179.5 183 57.9
C08p30910 Brassica napus HOM05D003593 ORTHO05D004064 3.2e-43 179.1 189 56.1
Lsat_1_v5_gn_9_9120 Lactuca sativa HOM05D003593 ORTHO05D004064 3.2e-43 179.1 196 57.1
Manes.16G049600 Manihot esculenta HOM05D003593 ORTHO05D004064 5.4e-43 178.3 172 59.9
Os08g0533700 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 1.2e-42 177.2 188 56.9
DCAR_007335 Daucus carota HOM05D003593 ORTHO05D002993 1.6e-42 176.8 174 60.3
MBI16_g31002_MAGBIO Magnolia biondii HOM05D003593 ORTHO05D004064 3.5e-42 175.6 193 53.9
CDE02G1962 Ceratophyllum demersum HOM05D003593 ORTHO05D004064 2.3e-41 172.9 184 56.0
SGA_v2.0_scaffold10G05150 Striga asiatica HOM05D003593 ORTHO05D004064 6.6e-41 171.4 224 51.3
AL1G62820 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 8.7e-41 171.0 183 55.2
Nitab4.5_0005797g0010 Nicotiana tabacum HOM05D003593 ORTHO05D004064 8.7e-41 171.0 175 58.9
Zm00001eb036800 Zea mays HOM05D003593 ORTHO05D004064 1.1e-40 170.6 185 57.3
AT1G54110 Arabidopsis thaliana HOM05D003593 ORTHO05D004064 1.5e-40 170.2 184 53.3
ATR0580G077 Amborella trichopoda HOM05D003593 ORTHO05D004064 2.5e-40 169.5 185 57.3
Zm00001eb252050 Zea mays HOM05D003593 ORTHO05D004064 4.3e-40 168.7 184 56.0
CDE06G1796 Ceratophyllum demersum HOM05D003593 ORTHO05D004064 3.6e-39 165.6 184 52.7
Aa31LG5G19840 Aethionema arabicum HOM05D003593 ORTHO05D004064 8.1e-39 164.5 158 58.2
PSO170G4544 Papaver somniferum HOM05D003593 ORTHO05D004064 2.4e-38 162.9 196 55.1
AUR62029320 Chenopodium quinoa HOM05D003593 ORTHO05D004064 7.6e-37 157.9 156 60.9
PSO170G1127 Papaver somniferum HOM05D003593 ORTHO05D004064 1.3e-36 157.1 176 57.4
HPP92_006993 Vanilla planifolia HOM05D003593 ORTHO05D004064 2.2e-36 156.4 174 51.1
Manes.15G093801 Manihot esculenta HOM05D003593 ORTHO05D004064 3.8e-36 155.6 210 47.1
Os09g0272500 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 3.5e-34 149.1 186 48.4
Sopen02g018530 Solanum pennellii HOM05D003593 ORTHO05D004064 3.5e-34 149.1 157 56.7
Manes.03G101800 Manihot esculenta HOM05D003593 ORTHO05D004064 4.6e-34 148.7 158 55.7
Peaxi162Scf00074g00739 Petunia axillaris HOM05D003593 ORTHO05D004064 2.3e-33 146.4 184 50.0
BcaB01g00076 Brassica carinata HOM05D003593 ORTHO05D004064 3.0e-33 146.0 158 53.2
Thecc.10G141700 Theobroma cacao HOM05D003593 ORTHO05D004064 8.7e-33 144.4 147 59.9
CSS0019003 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 5.6e-32 141.7 137 59.9
HanXRQChr10g0281101 Helianthus annuus HOM05D003593 ORTHO05D004064 2.8e-31 139.4 167 52.7
CSS0014982 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 1.7e-28 130.2 135 58.5
BcaC07g39889 Brassica carinata HOM05D003593 ORTHO05D004064 4.9e-28 128.6 163 49.7
Lj2g0027873 Lotus japonicus HOM05D003593 ORTHO05D004064 1.3e-25 120.6 113 63.7
Ah.04g164950 Amaranthus hybridus HOM05D003593 ORTHO05D004064 3.0e-25 119.4 216 41.7
CSS0030751 Camellia sinensis var. sinensis HOM05D003593 ORTHO05D004064 3.0e-25 119.4 193 44.0
SMO288G0003 Selaginella moellendorffii HOM05D003593 ORTHO05D004064 1.9e-24 116.7 187 41.7
Actinidia14176 Actinidia chinensis HOM05D003593 ORTHO05D004064 3.3e-24 115.9 130 57.7
AL6G40520 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 3.7e-23 112.5 146 47.3
MD16G1244100 Malus domestica HOM05D003593 ORTHO05D004064 3.7e-23 112.5 109 60.6
Rhsim08G0153900 Rhododendron simsii HOM05D003593 ORTHO05D004064 3.7e-23 112.5 197 43.1
AL1G48760 Arabidopsis lyrata HOM05D003593 ORTHO05D004064 3.1e-22 109.4 146 45.9
SMO352G0089 Selaginella moellendorffii HOM05D003593 ORTHO05D004064 5.3e-22 108.6 184 40.8
AagrBONN_evm.TU.Sc2ySwM_368.144 Anthoceros agrestis HOM05D003593 ORTHO05D004064 4.5e-21 105.5 205 40.5
Glyma.02G282202 Glycine max HOM05D003593 ORTHO05D004064 5.8e-21 105.1 151 50.3
MD16G1244000 Malus domestica HOM05D003593 ORTHO05D004064 7.6e-21 104.8 74 71.6
Os02g0306100 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 1.4e-19 100.5 117 53.8
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 1.6e-18 97.1 71 67.6
Os08g0534350 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 2.1e-18 96.7 117 53.0
Os08g0535000 Oryza sativa ssp. japonica HOM05D003593 ORTHO05D004064 2.1e-18 96.7 117 53.0
Pp3c17_5110 Physcomitrium patens HOM05D003593 ORTHO05D004064 1.3e-17 94.0 213 31.9
Atru.chr10.1467 Acer truncatum HOM05D003593 ORTHO05D004064 6.7e-17 91.7 67 68.7
Haze_22055 Corylus avellana HOM05D003593 ORTHO05D004064 2.5e-16 89.7 153 43.8
Mapoly0001s0213 Marchantia polymorpha HOM05D003593 ORTHO05D004064 1.3e-15 87.4 199 33.2
SEGI_30783 Sequoiadendron giganteum HOM05D003593 ORTHO05D004064 1.6e-15 87.0 141 41.1
Haze_22057 Corylus avellana HOM05D003593 ORTHO05D004064 6.9e-14 81.6 52 76.9
CBR_g26495 Chara braunii HOM05D003593 ORTHO05D004064 2.2e-12 76.6 205 34.6
Lsat_1_v5_gn_7_57621 Lactuca sativa HOM05D001776 ORTHO05D001771 1.1e-11 74.3 52 73.1
SEGI_34697 Sequoiadendron giganteum HOM05D003593 ORTHO05D004064 1.9e-11 73.6 86 46.5
DCAR_023430 Daucus carota HOM05D005662 ORTHO05D004064 6.1e-10 68.6 89 47.2
Aqoxy5G03192 Aquilegia oxysepala HOM05D003593 ORTHO05D004064 3.9e-09 65.9 159 32.1
BolC8t50716H Brassica oleracea HOM05D003593 ORTHO05D004064 4.8e-07 58.9 40 72.5
Solyc02g062120.3 Solanum lycopersicum HOM05D003593 ORTHO05D004064 1.1e-06 57.8 54 57.4
arahy.Tifrunner.gnm1.ann1.0CTM64 Arachis hypogaea HOM05D003593 ORTHO05D004064 2.4e-06 56.6 135 37.8


User provided reference genes

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