Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006400.2 Cucumis melo HOM05D006230 ORTHO05D007598 5.1e-76 287.7 151 100.0
CsaV3_3G011880 Cucumis sativus L. HOM05D006230 ORTHO05D007598 1.7e-71 272.7 151 94.0
ClCG05G004160 Citrullus lanatus HOM05D006230 ORTHO05D007598 1.9e-67 259.2 151 90.7
Sed0003219 Sechium edule HOM05D006230 ORTHO05D007598 6.7e-60 234.2 152 85.5
Sed0015876 Sechium edule HOM05D006230 ORTHO05D007598 9.6e-59 230.3 151 82.8
Atru.chr4.1981 Acer truncatum HOM05D006230 ORTHO05D007598 1.9e-46 189.5 142 73.9
Hma1.2p1_0112F.1_g054490 Hydrangea macrophylla HOM05D006230 ORTHO05D007598 1.9e-46 189.5 130 73.8
Dinv27088 Davidia involucrata HOM05D006230 ORTHO05D007598 2.7e-45 185.7 130 73.1
Thecc.04G260000 Theobroma cacao HOM05D006230 ORTHO05D007598 4.6e-45 184.9 124 77.4
Gohir.A02G041200 Gossypium hirsutum HOM05D006230 ORTHO05D007598 1.3e-44 183.3 140 72.9
GSVIVG01027870001 Vitis vinifera HOM05D006230 ORTHO05D007598 2.3e-44 182.6 118 80.5
Lalb_Chr03g0037521 Lupinus albus HOM05D006230 ORTHO05D007598 3.9e-44 181.8 142 68.3
Nitab4.5_0001425g0090 Nicotiana tabacum HOM05D006230 ORTHO05D007598 3.9e-44 181.8 123 74.0
Gorai.005G052000 Gossypium raimondii HOM05D006230 ORTHO05D007598 8.7e-44 180.6 140 72.1
CSS0007771 Camellia sinensis var. sinensis HOM05D006230 ORTHO05D007598 1.1e-43 180.3 131 74.0
Gohir.D02G047000 Gossypium hirsutum HOM05D006230 ORTHO05D007598 1.5e-43 179.9 139 71.9
COL.COLO4_15930 Corchorus olitorius HOM05D006230 ORTHO05D007598 1.9e-43 179.5 144 69.4
Gohir.A10G109400 Gossypium hirsutum HOM05D006230 ORTHO05D007598 1.9e-43 179.5 116 80.2
Nitab4.5_0006936g0040 Nicotiana tabacum HOM05D006230 ORTHO05D007598 1.9e-43 179.5 123 74.0
Ca_05177_v3 Cicer arietinum L. HOM05D006230 ORTHO05D007598 2.5e-43 179.1 140 69.3
PSO017G6779 Papaver somniferum HOM05D006230 ORTHO05D007598 2.5e-43 179.1 134 73.9
Cfa014753 Carpinus fangiana HOM05D006230 ORTHO05D007598 3.3e-43 178.7 154 68.2
Duzib151G0304 Durio zibethinus HOM05D006230 ORTHO05D007598 3.3e-43 178.7 144 67.4
Sc13g0005900 Simmondsia chinensis HOM05D006230 ORTHO05D007598 3.3e-43 178.7 121 78.5
TWI73G0434 Tripterygium wilfordii HOM05D006230 ORTHO05D007598 3.3e-43 178.7 151 64.9
TAR636G3560 Trochodendron aralioides HOM05D006230 ORTHO05D007598 3.3e-43 178.7 154 64.3
Hund11917 Selenicereus undatus HOM05D006230 ORTHO05D007598 4.3e-43 178.3 129 71.3
PSO063G4949 Papaver somniferum HOM05D006230 ORTHO05D007598 5.7e-43 177.9 134 73.1
CANSAT78G0887 Cannabis sativa HOM05D006230 ORTHO05D007598 9.6e-43 177.2 156 66.7
AUR62015538 Chenopodium quinoa HOM05D006230 ORTHO05D007598 9.6e-43 177.2 147 64.6
Medtr1g041320 Medicago truncatula HOM05D006230 ORTHO05D007598 9.6e-43 177.2 136 69.9
CANSAT78G0232 Cannabis sativa HOM05D006230 ORTHO05D007598 1.3e-42 176.8 156 66.0
Duzib212G0996 Durio zibethinus HOM05D006230 ORTHO05D007598 1.6e-42 176.4 125 76.0
Gorai.011G177300 Gossypium raimondii HOM05D006230 ORTHO05D007598 2.1e-42 176.0 116 80.2
Potri.010G068500 Populus trichocarpa HOM05D006230 ORTHO05D007598 2.1e-42 176.0 119 79.8
Sabra10G0038500 Salix brachista HOM05D006230 ORTHO05D007598 2.1e-42 176.0 119 79.8
THA.LOC104801077 Tarenaya hassleriana HOM05D006230 ORTHO05D007598 2.1e-42 176.0 123 78.9
EL10Ac3g04971 Beta vulgaris HOM05D006230 ORTHO05D007598 3.7e-42 175.3 154 67.5
Cpa.g.sc44.25 Carica papaya HOM05D006230 ORTHO05D007598 3.7e-42 175.3 150 66.7
Oeu023312.1 Olea europaea HOM05D006230 ORTHO05D007598 3.7e-42 175.3 151 64.9
Haze_11428 Corylus avellana HOM05D006230 ORTHO05D007598 4.8e-42 174.9 154 66.9
FvH4_4g04200 Fragaria vesca HOM05D006230 ORTHO05D007598 4.8e-42 174.9 129 72.9
Sp1g03290 Schrenkiella parvula HOM05D006230 ORTHO05D007598 4.8e-42 174.9 144 71.5
Ciclev10006136m.g Citrus clementina HOM05D006230 ORTHO05D007598 6.3e-42 174.5 152 65.8
Gohir.D10G157800 Gossypium hirsutum HOM05D006230 ORTHO05D007598 6.3e-42 174.5 116 79.3
Sopen09g033320 Solanum pennellii HOM05D006230 ORTHO05D007598 6.3e-42 174.5 123 74.0
Eucgr.H02995 Eucalyptus grandis HOM05D006230 ORTHO05D007598 8.2e-42 174.1 153 62.7
Solyc09g090410.3 Solanum lycopersicum HOM05D006230 ORTHO05D007598 1.1e-41 173.7 123 73.2
Migut.G00496 Erythranthe guttata HOM05D006230 ORTHO05D007598 1.4e-41 173.3 119 73.9
HanXRQChr14g0434851 Helianthus annuus HOM05D006230 ORTHO05D007598 1.4e-41 173.3 131 72.5
QL06p019992 Quercus lobata HOM05D006230 ORTHO05D007598 1.4e-41 173.3 162 65.4
BcaB06g28689 Brassica carinata HOM05D006230 ORTHO05D007598 1.8e-41 172.9 141 70.9
Carub.0001s0365 Capsella rubella HOM05D006230 ORTHO05D007598 1.8e-41 172.9 120 78.3
TWI53G0221 Tripterygium wilfordii HOM05D006230 ORTHO05D007598 1.8e-41 172.9 151 64.9
Aqoxy2G03714 Aquilegia oxysepala HOM05D006230 ORTHO05D007598 2.4e-41 172.6 153 66.7
Lalb_Chr01g0020881 Lupinus albus HOM05D006230 ORTHO05D007598 3.1e-41 172.2 150 64.7
Potri.008G169800 Populus trichocarpa HOM05D006230 ORTHO05D007598 3.1e-41 172.2 128 72.7
FAN12G2171 Fragaria x ananassa HOM05D006230 ORTHO05D007598 4.1e-41 171.8 129 72.1
Psat6g103800 Pisum sativum HOM05D006230 ORTHO05D007598 4.1e-41 171.8 152 63.8
Sp4g15790 Schrenkiella parvula HOM05D006230 ORTHO05D007598 4.1e-41 171.8 134 72.4
TPR.G32792 Trifolium pratense HOM05D006230 ORTHO05D007598 4.1e-41 171.8 124 73.4
Actinidia20827 Actinidia chinensis HOM05D006230 ORTHO05D007598 5.3e-41 171.4 123 72.4
CAN.G220.45 Capsicum annuum HOM05D006230 ORTHO05D007598 5.3e-41 171.4 123 71.5
FAN17G1889 Fragaria x ananassa HOM05D006230 ORTHO05D007598 5.3e-41 171.4 131 71.0
BraA04t18078Z Brassica rapa HOM05D006230 ORTHO05D007598 6.9e-41 171.0 141 70.9
DCAR_002306 Daucus carota HOM05D006230 ORTHO05D007598 6.9e-41 171.0 153 62.7
Lsat_1_v5_gn_2_39681 Lactuca sativa HOM05D006230 ORTHO05D007598 6.9e-41 171.0 127 73.2
PGR004G2031 Punica granatum HOM05D006230 ORTHO05D007598 6.9e-41 171.0 155 63.2
PGSC0003DMG400017161 Solanum tuberosum HOM05D006230 ORTHO05D007598 6.9e-41 171.0 141 67.4
CARHR127460 Cardamine hirsuta HOM05D006230 ORTHO05D007598 1.2e-40 170.2 144 70.1
CiPaw.02G108600 Carya illinoinensis HOM05D006230 ORTHO05D007598 1.2e-40 170.2 127 72.4
RcHm_v2.0_Chr4g0394691 Rosa chinensis HOM05D006230 ORTHO05D007598 1.2e-40 170.2 130 70.8
Actinidia35808 Actinidia chinensis HOM05D006230 ORTHO05D007598 1.5e-40 169.9 123 71.5
Thhalv10017390m.g Eutrema salsugineum HOM05D006230 ORTHO05D007598 2.0e-40 169.5 143 69.2
Manes.15G043800 Manihot esculenta HOM05D006230 ORTHO05D007598 2.0e-40 169.5 155 63.2
A04p25750 Brassica napus HOM05D006230 ORTHO05D007598 2.6e-40 169.1 141 69.5
BolC4t27775H Brassica oleracea HOM05D006230 ORTHO05D007598 2.6e-40 169.1 143 68.5
Aa31LG5G3840 Aethionema arabicum HOM05D006230 ORTHO05D007598 3.4e-40 168.7 123 78.0
Carub.0004s1508 Capsella rubella HOM05D006230 ORTHO05D007598 3.4e-40 168.7 144 68.8
Phvul.007G278700 Phaseolus vulgaris HOM05D006230 ORTHO05D007598 3.4e-40 168.7 134 67.9
AL4G29120 Arabidopsis lyrata HOM05D006230 ORTHO05D007598 4.5e-40 168.3 147 68.0
AT2G33450 Arabidopsis thaliana HOM05D006230 ORTHO05D007598 4.5e-40 168.3 147 68.0
Cc03_g05900 Coffea canephora HOM05D006230 ORTHO05D007598 4.5e-40 168.3 142 65.5
BcaB02g10562 Brassica carinata HOM05D006230 ORTHO05D007598 7.6e-40 167.5 139 69.1
C04p62980 Brassica napus HOM05D006230 ORTHO05D007598 7.6e-40 167.5 143 67.8
ECA234G3973 Erigeron canadensis HOM05D006230 ORTHO05D007598 7.6e-40 167.5 150 62.7
CDE05G0971 Ceratophyllum demersum HOM05D006230 ORTHO05D007598 1.7e-39 166.4 130 67.7
BcaC02g07821 Brassica carinata HOM05D006230 ORTHO05D007598 2.2e-39 166.0 144 65.3
Peaxi162Scf00602g00421 Petunia axillaris HOM05D006230 ORTHO05D007598 2.9e-39 165.6 130 69.2
Glyma.10G002600 Glycine max HOM05D006230 ORTHO05D007598 3.8e-39 165.2 149 59.7
AL1G14110 Arabidopsis lyrata HOM05D006230 ORTHO05D007598 5.0e-39 164.9 135 71.1
MD16G1223800 Malus domestica HOM05D006230 ORTHO05D007598 6.5e-39 164.5 147 66.0
BcaC02g11431 Brassica carinata HOM05D006230 ORTHO05D007598 8.5e-39 164.1 143 67.8
C04p15650 Brassica napus HOM05D006230 ORTHO05D007598 8.5e-39 164.1 143 67.8
Prupe.1G045100 Prunus persica HOM05D006230 ORTHO05D007598 1.4e-38 163.3 154 64.9
CDE11G0022 Ceratophyllum demersum HOM05D006230 ORTHO05D007598 2.5e-38 162.5 129 67.4
ATR0736G074 Amborella trichopoda HOM05D006230 ORTHO05D007598 4.2e-38 161.8 139 64.0
SGA_v2.0_scaffold67G22731 Striga asiatica HOM05D006230 ORTHO05D007598 7.2e-38 161.0 141 66.0
vmacro08530 Vaccinium macrocarpon HOM05D006230 ORTHO05D007598 1.2e-37 160.2 153 60.8
SalBow3G4585 Salvia bowleyana HOM05D006230 ORTHO05D007598 1.6e-37 159.8 137 64.2
unitig_32.g10851 Utricularia gibba HOM05D006230 ORTHO05D007598 1.6e-37 159.8 118 70.3
Lj6g0026311 Lotus japonicus HOM05D006230 ORTHO05D007598 3.6e-37 158.7 151 62.3
Oeu059405.1 Olea europaea HOM05D006230 ORTHO05D007598 3.6e-37 158.7 187 52.4
Zm00001eb222850 Zea mays HOM05D006230 ORTHO05D007598 7.9e-37 157.5 152 59.9
MD13G1218400 Malus domestica HOM05D006230 ORTHO05D007598 3.0e-36 155.6 113 73.5
BolC4t23134H Brassica oleracea HOM05D006230 ORTHO05D007598 3.9e-36 155.2 144 66.0
Os05g0101400 Oryza sativa ssp. japonica HOM05D006230 ORTHO05D007598 5.1e-36 154.8 150 61.3
Zm00001eb047510 Zea mays HOM05D006230 ORTHO05D007598 1.5e-35 153.3 120 67.5
Thecc.10G124200 Theobroma cacao HOM05D006230 ORTHO05D007598 9.7e-35 150.6 104 76.0
HPP92_012809 Vanilla planifolia HOM05D006230 ORTHO05D007598 2.8e-34 149.1 122 64.8
arahy.Tifrunner.gnm1.ann1.ADZ0J4 Arachis hypogaea HOM05D006230 ORTHO05D007598 1.8e-33 146.4 78 91.0
RcHm_v2.0_Chr4g0394651 Rosa chinensis HOM05D006230 ORTHO05D007598 2.2e-31 139.4 148 55.4
Prupe.8G083300 Prunus persica HOM05D006230 ORTHO05D007598 3.6e-29 132.1 82 81.7
MD00G1118000 Malus domestica HOM05D006230 ORTHO05D007598 1.0e-28 130.6 89 70.8
SEGI_13554 Sequoiadendron giganteum HOM05D006230 ORTHO05D007598 1.8e-28 129.8 81 77.8
Rhsim04G0174900 Rhododendron simsii HOM05D006230 ORTHO05D007598 2.3e-28 129.4 91 75.8
AagrBONN_evm.TU.Sc2ySwM_228.3795 Anthoceros agrestis HOM05D006230 ORTHO05D007598 3.7e-26 122.1 120 54.2
Ah.04g155450 Amaranthus hybridus HOM05D000071 ORTHO05D007598 4.8e-26 121.7 86 74.4
Pp3c6_1140 Physcomitrium patens HOM05D006230 ORTHO05D007598 5.9e-24 114.8 130 56.2
Mapoly0087s0077 Marchantia polymorpha HOM05D006230 ORTHO05D007598 1.3e-23 113.6 128 53.1
Pp3c5_28500 Physcomitrium patens HOM05D006230 ORTHO05D007598 6.5e-23 111.3 107 58.9
Duzib052G0467 Durio zibethinus HOM05D006230 ORTHO05D007598 8.5e-23 110.9 88 63.6
SMO131G0001 Selaginella moellendorffii HOM05D006230 ORTHO05D007598 6.7e-20 101.3 75 62.7
CBR_g23072 Chara braunii HOM05D006230 ORTHO05D007598 2.0e-19 99.8 75 65.3
Cre06.g265800 Chlamydomonas reinhardtii HOM05D006230 ORTHO05D007598 2.6e-16 89.4 77 57.1
MCO07G061 Micromonas commoda HOM05D006230 ORTHO05D007598 2.9e-15 85.9 113 45.1
Nn3g19733 Nelumbo nucifera HOM05D006230 ORTHO05D007598 2.0e-08 63.2 36 88.9


User provided reference genes

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