Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006384.2 Cucumis melo HOM05D004828 ORTHO05D005713 5.3e-66 254.2 128 100.0
CsaV3_3G011780 Cucumis sativus L. HOM05D004828 ORTHO05D005713 1.2e-65 253.1 128 98.4
Prupe.1G046500 Prunus persica HOM05D004828 ORTHO05D005713 2.8e-51 205.3 128 78.9
RcHm_v2.0_Chr4g0394991 Rosa chinensis HOM05D004828 ORTHO05D005713 3.7e-51 204.9 128 80.5
FvH4_4g04430 Fragaria vesca HOM05D004828 ORTHO05D005713 4.8e-51 204.5 128 79.7
FAN17G1436 Fragaria x ananassa HOM05D004828 ORTHO05D005713 4.8e-51 204.5 128 79.7
TAR362G0439 Trochodendron aralioides HOM05D004828 ORTHO05D005713 8.2e-51 203.8 128 77.3
CSS0001982 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 1.1e-50 203.4 130 78.5
CiPaw.01G179200 Carya illinoinensis HOM05D004828 ORTHO05D005713 1.4e-50 203.0 128 78.1
COL.COLO4_15949 Corchorus olitorius HOM05D004828 ORTHO05D005713 2.4e-50 202.2 127 77.2
Actinidia35812 Actinidia chinensis HOM05D004828 ORTHO05D005713 4.1e-50 201.4 128 78.1
Cpa.g.sc44.12 Carica papaya HOM05D004828 ORTHO05D005713 5.3e-50 201.1 128 78.1
Thecc.04G262300 Theobroma cacao HOM05D004828 ORTHO05D005713 6.9e-50 200.7 128 76.6
CSS0013271 Camellia sinensis var. sinensis HOM05D004828 ORTHO05D005713 1.2e-49 199.9 129 78.3
QL06p020769 Quercus lobata HOM05D004828 ORTHO05D005713 1.2e-49 199.9 127 75.6
Dinv27097 Davidia involucrata HOM05D004828 ORTHO05D005713 2.6e-49 198.7 128 75.0
Duzib212G0408 Durio zibethinus HOM05D004828 ORTHO05D005713 2.6e-49 198.7 132 76.5
Hma1.2p1_0112F.1_g054580 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 2.6e-49 198.7 128 77.3
Oeu055253.1 Olea europaea HOM05D004828 ORTHO05D005713 2.9e-48 195.3 128 76.6
Rhsim04G0173400 Rhododendron simsii HOM05D004828 ORTHO05D005713 5.0e-48 194.5 131 77.9
Actinidia39923 Actinidia chinensis HOM05D004828 ORTHO05D005713 6.5e-48 194.1 131 77.1
MD16G1225200 Malus domestica HOM05D004828 ORTHO05D005713 6.5e-48 194.1 128 75.8
PGR004G2594 Punica granatum HOM05D004828 ORTHO05D005713 6.5e-48 194.1 129 78.3
Potri.008G171000 Populus trichocarpa HOM05D004828 ORTHO05D005713 8.4e-48 193.7 128 73.4
Cfa014773 Carpinus fangiana HOM05D004828 ORTHO05D005713 1.1e-47 193.4 128 76.6
Oeu059400.1 Olea europaea HOM05D004828 ORTHO05D005713 1.4e-47 193.0 128 75.0
MD13G1219800 Malus domestica HOM05D004828 ORTHO05D005713 1.9e-47 192.6 128 75.0
Haze_11447 Corylus avellana HOM05D004828 ORTHO05D005713 2.5e-47 192.2 128 75.8
GSVIVG01027902001 Vitis vinifera HOM05D004828 ORTHO05D005713 2.5e-47 192.2 129 75.2
Cc03_g06030 Coffea canephora HOM05D004828 ORTHO05D005713 5.5e-47 191.0 128 72.7
Dinv29813 Davidia involucrata HOM05D004828 ORTHO05D005713 5.5e-47 191.0 131 74.0
TAR365G0027 Trochodendron aralioides HOM05D004828 ORTHO05D005713 5.5e-47 191.0 123 75.6
vmacro08545 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 1.2e-46 189.9 130 76.2
VMungo0720G1886 Vigna mungo HOM05D004828 ORTHO05D005713 1.2e-46 189.9 130 74.6
Glyma.20G085900 Glycine max HOM05D004828 ORTHO05D005713 2.1e-46 189.1 130 73.8
PSO674G0081 Papaver somniferum HOM05D004828 ORTHO05D005713 2.1e-46 189.1 126 74.6
PSO832G3336 Papaver somniferum HOM05D004828 ORTHO05D005713 2.1e-46 189.1 126 74.6
Glyma.10G136300 Glycine max HOM05D004828 ORTHO05D005713 2.7e-46 188.7 130 73.8
Psat6g106280 Pisum sativum HOM05D004828 ORTHO05D005713 2.7e-46 188.7 131 73.3
Aqoxy5G00162 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 6.1e-46 187.6 129 72.9
Medtr1g045140 Medicago truncatula HOM05D004828 ORTHO05D005713 6.1e-46 187.6 131 74.0
ClCG05G004070 Citrullus lanatus HOM05D002764 ORTHO05D002960 7.9e-46 187.2 97 97.9
Gohir.D01G023418 Gossypium hirsutum HOM05D004828 ORTHO05D005713 7.9e-46 187.2 128 74.2
Phvul.007G271000 Phaseolus vulgaris HOM05D004828 ORTHO05D005713 7.9e-46 187.2 130 73.8
ClCG06G007210 Citrullus lanatus HOM05D004828 ORTHO05D005713 1.0e-45 186.8 128 76.6
CiPaw.02G107900 Carya illinoinensis HOM05D004828 ORTHO05D005713 1.3e-45 186.4 128 75.8
MELO3C023036.2 Cucumis melo HOM05D004828 ORTHO05D005713 2.3e-45 185.7 128 76.6
CsaV3_2G012500 Cucumis sativus L. HOM05D004828 ORTHO05D005713 2.3e-45 185.7 128 76.6
HanXRQChr11g0343071 Helianthus annuus HOM05D004828 ORTHO05D005713 2.3e-45 185.7 128 72.7
Ciclev10006216m.g Citrus clementina HOM05D004828 ORTHO05D005713 3.0e-45 185.3 129 76.7
Gorai.002G026400 Gossypium raimondii HOM05D004828 ORTHO05D005713 3.9e-45 184.9 128 73.4
Lj6g0012692 Lotus japonicus HOM05D004828 ORTHO05D005713 3.9e-45 184.9 128 73.4
Hma1.2p1_0385F.1_g141490 Hydrangea macrophylla HOM05D004828 ORTHO05D005713 6.7e-45 184.1 126 74.6
Manes.03G160100 Manihot esculenta HOM05D004828 ORTHO05D005713 1.1e-44 183.3 131 74.0
Eucgr.H02963 Eucalyptus grandis HOM05D004828 ORTHO05D005713 1.5e-44 183.0 128 72.7
Lsat_1_v5_gn_1_75300 Lactuca sativa HOM05D004828 ORTHO05D005713 1.5e-44 183.0 130 71.5
TPR.G23990 Trifolium pratense HOM05D004828 ORTHO05D005713 1.9e-44 182.6 131 72.5
Sabra08G0130800 Salix brachista HOM05D004828 ORTHO05D005713 2.5e-44 182.2 128 71.1
Lalb_Chr01g0020281 Lupinus albus HOM05D004828 ORTHO05D005713 3.3e-44 181.8 129 72.1
Potri.010G066900 Populus trichocarpa HOM05D004828 ORTHO05D005713 5.7e-44 181.0 128 71.1
Aqoxy2G03727 Aquilegia oxysepala HOM05D004828 ORTHO05D005713 7.4e-44 180.6 130 70.8
Ca_11922_v3 Cicer arietinum L. HOM05D004828 ORTHO05D005713 1.6e-43 179.5 130 71.5
Sed0009082 Sechium edule HOM05D004828 ORTHO05D005713 1.6e-43 179.5 125 72.0
Sabra10G0040600 Salix brachista HOM05D004828 ORTHO05D005713 6.3e-43 177.6 128 68.0
arahy.Tifrunner.gnm1.ann1.DHUA7P Arachis hypogaea HOM05D004828 ORTHO05D005713 8.2e-43 177.2 128 71.9
arahy.Tifrunner.gnm1.ann1.P56WT2 Arachis hypogaea HOM05D004828 ORTHO05D005713 8.2e-43 177.2 128 71.9
vmacro15472 Vaccinium macrocarpon HOM05D004828 ORTHO05D005713 1.4e-42 176.4 129 73.6
AL3G43120 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 1.8e-42 176.0 132 71.2
Carub.0003s2689 Capsella rubella HOM05D004828 ORTHO05D005713 1.8e-42 176.0 129 70.5
Duzib151G0671 Durio zibethinus HOM05D004828 ORTHO05D005713 2.4e-42 175.6 128 71.1
Manes.15G044800 Manihot esculenta HOM05D004828 ORTHO05D005713 2.4e-42 175.6 130 71.5
Sc13g0006160 Simmondsia chinensis HOM05D004828 ORTHO05D005713 2.4e-42 175.6 135 68.9
C03p55490 Brassica napus HOM05D004828 ORTHO05D005713 3.1e-42 175.3 133 66.9
BolC3t17826H Brassica oleracea HOM05D004828 ORTHO05D005713 3.1e-42 175.3 133 66.9
HanXRQChr01g0022921 Helianthus annuus HOM05D004828 ORTHO05D005713 4.1e-42 174.9 131 71.8
Migut.N00294 Erythranthe guttata HOM05D004828 ORTHO05D005713 5.3e-42 174.5 128 69.5
MSTRG.4162 Avicennia marina HOM05D004828 ORTHO05D005713 6.9e-42 174.1 116 73.3
ECA248G3746 Erigeron canadensis HOM05D002764 ORTHO05D002960 6.9e-42 174.1 116 74.1
AT2G05620 Arabidopsis thaliana HOM05D004828 ORTHO05D005713 1.2e-41 173.3 132 69.7
Thhalv10002723m.g Eutrema salsugineum HOM05D004828 ORTHO05D005713 1.5e-41 172.9 119 71.4
Aa31LG8G11410 Aethionema arabicum HOM05D004828 ORTHO05D005713 3.4e-41 171.8 133 67.7
BcaC01g03156 Brassica carinata HOM05D004828 ORTHO05D005713 4.5e-41 171.4 132 64.4
Sp3g24080 Schrenkiella parvula HOM05D004828 ORTHO05D005713 4.5e-41 171.4 119 70.6
BcaB06g26846 Brassica carinata HOM05D004828 ORTHO05D005713 5.9e-41 171.0 132 65.2
Gohir.A09G227900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.0e-40 170.2 128 68.0
Gohir.D09G228900 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.0e-40 170.2 128 68.0
Gorai.006G251600 Gossypium raimondii HOM05D004828 ORTHO05D005713 1.0e-40 170.2 128 68.0
BcaB08g34505 Brassica carinata HOM05D004828 ORTHO05D005713 1.3e-40 169.9 128 64.8
Lsat_1_v5_gn_6_68641 Lactuca sativa HOM05D004828 ORTHO05D005713 1.3e-40 169.9 129 66.7
Hund03081 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.3e-40 169.9 130 72.3
A03p44660 Brassica napus HOM05D004828 ORTHO05D005713 1.7e-40 169.5 133 68.4
BraA03t13600Z Brassica rapa HOM05D004828 ORTHO05D005713 1.7e-40 169.5 133 68.4
Rhsim02G0043000 Rhododendron simsii HOM05D004828 ORTHO05D005713 1.7e-40 169.5 129 69.0
Lalb_Chr19g0128491 Lupinus albus HOM05D004828 ORTHO05D005713 2.2e-40 169.1 128 68.0
THA.LOC104808875 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 3.8e-40 168.3 134 67.2
THA.LOC104826602 Tarenaya hassleriana HOM05D004828 ORTHO05D005713 3.8e-40 168.3 132 68.2
Gohir.D10G159300 Gossypium hirsutum HOM05D004828 ORTHO05D005713 6.5e-40 167.5 133 68.4
HanXRQChr02g0059331 Helianthus annuus HOM05D004828 ORTHO05D005713 1.4e-39 166.4 124 62.9
Hund27524 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.9e-39 166.0 128 69.5
Hund27531 Selenicereus undatus HOM05D004828 ORTHO05D005713 1.9e-39 166.0 128 69.5
TWI73G1205 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 2.5e-39 165.6 118 71.2
Migut.G00486 Erythranthe guttata HOM05D004828 ORTHO05D005713 3.2e-39 165.2 114 72.8
FAN12G3003 Fragaria x ananassa HOM05D004828 ORTHO05D005713 3.2e-39 165.2 96 85.4
BcaC06g35923 Brassica carinata HOM05D004828 ORTHO05D005713 5.5e-39 164.5 132 62.9
C07p09630 Brassica napus HOM05D004828 ORTHO05D005713 5.5e-39 164.5 132 62.9
BolC7t41404H Brassica oleracea HOM05D004828 ORTHO05D005713 5.5e-39 164.5 132 62.9
Nitab4.5_0001051g0110 Nicotiana tabacum HOM05D004828 ORTHO05D005713 5.5e-39 164.5 126 67.5
Atru.chr4.1937 Acer truncatum HOM05D004828 ORTHO05D005713 7.2e-39 164.1 137 67.9
Nitab4.5_0002709g0020 Nicotiana tabacum HOM05D004828 ORTHO05D005713 1.2e-38 163.3 126 68.3
EL10Ac3g04953 Beta vulgaris HOM05D004828 ORTHO05D005713 2.7e-38 162.2 131 69.5
SGA_v2.0_scaffold31G12643 Striga asiatica HOM05D004828 ORTHO05D005713 3.6e-38 161.8 115 72.2
CARHR103280 Cardamine hirsuta HOM05D004828 ORTHO05D005713 1.4e-37 159.8 129 65.1
CDE02G2944 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 1.4e-37 159.8 128 65.6
AUR62035095 Chenopodium quinoa HOM05D004828 ORTHO05D005713 1.4e-37 159.8 131 67.9
Ah.04g155350 Amaranthus hybridus HOM05D004828 ORTHO05D005713 2.3e-37 159.1 131 68.7
ATR1127G070 Amborella trichopoda HOM05D004828 ORTHO05D005713 2.3e-37 159.1 114 72.8
MBI07_g12928_MAGBIO Magnolia biondii HOM05D004828 ORTHO05D005713 3.0e-37 158.7 132 65.2
TWI53G1324 Tripterygium wilfordii HOM05D004828 ORTHO05D005713 3.0e-37 158.7 97 80.4
AUR62016177 Chenopodium quinoa HOM05D004828 ORTHO05D005713 3.9e-37 158.3 130 66.9
Os08g0566600 Oryza sativa ssp. japonica HOM05D004828 ORTHO05D005713 3.3e-36 155.2 107 72.0
Sed0028180 Sechium edule HOM05D004828 ORTHO05D005713 3.3e-36 155.2 122 67.2
DCAR_027339 Daucus carota HOM05D004828 ORTHO05D005713 7.4e-36 154.1 95 76.8
unitig_32.g10853 Utricularia gibba HOM05D004828 ORTHO05D005713 7.4e-36 154.1 130 66.2
Gohir.A10G108500 Gossypium hirsutum HOM05D004828 ORTHO05D005713 9.7e-36 153.7 128 64.8
Mapoly0121s0039 Marchantia polymorpha HOM05D004828 ORTHO05D005713 6.3e-35 151.0 127 64.6
CAN.G220.85 Capsicum annuum HOM05D004828 ORTHO05D005713 1.1e-34 150.2 109 69.7
PGSC0003DMG400017198 Solanum tuberosum HOM05D004828 ORTHO05D005713 1.4e-34 149.8 109 68.8
Sopen09g033510 Solanum pennellii HOM05D004828 ORTHO05D005713 3.1e-34 148.7 109 68.8
SEGI_28577 Sequoiadendron giganteum HOM05D004828 ORTHO05D005713 5.3e-34 147.9 87 81.6
Solyc09g090570.2 Solanum lycopersicum HOM05D004828 ORTHO05D005713 1.2e-33 146.7 87 81.6
Zm00001eb038530 Zea mays HOM05D004828 ORTHO05D005713 3.4e-33 145.2 114 66.7
Zm00001eb175600 Zea mays HOM05D004828 ORTHO05D005713 7.7e-33 144.1 113 68.1
Gorai.011G178900 Gossypium raimondii HOM05D004828 ORTHO05D005713 1.3e-32 143.3 128 61.7
Nn1g02928 Nelumbo nucifera HOM05D004828 ORTHO05D005713 3.8e-32 141.7 93 75.3
Nn3g19756 Nelumbo nucifera HOM05D004828 ORTHO05D005713 7.2e-31 137.5 94 74.5
AagrBONN_evm.TU.Sc2ySwM_117.3192 Anthoceros agrestis HOM05D004828 ORTHO05D005713 9.4e-31 137.1 114 60.5
CBR_g31156 Chara braunii HOM05D004828 ORTHO05D005713 2.7e-30 135.6 76 88.2
HPP92_008537 Vanilla planifolia HOM05D004828 ORTHO05D005713 1.4e-29 133.3 124 62.1
Pp3c8_17140 Physcomitrium patens HOM05D004828 ORTHO05D005713 1.1e-28 130.2 86 76.7
Pp3c24_11690 Physcomitrium patens HOM05D004828 ORTHO05D005713 1.5e-28 129.8 75 82.7
Gohir.A01G025800 Gossypium hirsutum HOM05D004828 ORTHO05D005713 1.8e-26 122.9 93 66.7
Peaxi162Scf00033g02911 Petunia axillaris HOM05D004828 ORTHO05D005713 3.1e-26 122.1 128 53.1
Actinidia20833 Actinidia chinensis HOM05D004828 ORTHO05D005713 1.0e-24 117.1 69 84.1
SalBow3G4432 Salvia bowleyana HOM05D004828 ORTHO05D005713 2.5e-23 112.5 129 59.7
MCO16G064 Micromonas commoda HOM05D004828 ORTHO05D005713 3.2e-23 112.1 124 53.2
Oeu002290.1 Olea europaea HOM05D004828 ORTHO05D005713 4.7e-22 108.2 116 52.6
CDE04G3689 Ceratophyllum demersum HOM05D004828 ORTHO05D005713 1.7e-19 99.8 98 57.1
Nn1g09503 Nelumbo nucifera HOM05D004828 ORTHO05D005713 2.8e-19 99.0 71 69.0
AL3G43100 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 8.2e-19 97.4 70 67.1
Cre05.g242400 Chlamydomonas reinhardtii HOM05D004828 ORTHO05D005713 7.0e-18 94.4 67 67.2
Actinidia11366 Actinidia chinensis HOM05D004828 ORTHO05D005713 5.9e-17 91.3 115 53.0
PRCOL_00004079 Prasinoderma coloniale HOM05D004828 ORTHO05D005713 4.2e-15 85.1 67 58.2
AL3G43090 Arabidopsis lyrata HOM05D004828 ORTHO05D005713 4.7e-14 81.6 61 63.9
Lalb_Chr03g0037001 Lupinus albus HOM05D004828 ORTHO05D005713 3.4e-12 75.5 44 75.0
ATR0733G110 Amborella trichopoda HOM05D004828 ORTHO05D005713 3.8e-08 62.0 52 59.6


User provided reference genes

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