Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006364.2 Cucumis melo HOM05D006155 ORTHO05D007529 1.5e-155 552.7 268 100.0
CsaV3_3G011540 Cucumis sativus L. HOM05D006155 ORTHO05D007529 1.5e-142 509.6 268 93.3
ClCG05G003860 Citrullus lanatus HOM05D006155 ORTHO05D007529 5.4e-137 491.1 284 85.9
Sed0003799 Sechium edule HOM05D006155 ORTHO05D007529 4.6e-112 408.3 274 74.8
Sed0011773 Sechium edule HOM05D006155 ORTHO05D007529 2.0e-107 392.9 226 81.9
Gorai.011G180400 Gossypium raimondii HOM05D006155 ORTHO05D007529 1.1e-97 360.5 235 74.0
Gohir.D10G160700 Gossypium hirsutum HOM05D006155 ORTHO05D007529 2.4e-97 359.4 235 73.6
Gohir.A10G106500 Gossypium hirsutum HOM05D006155 ORTHO05D007529 4.2e-97 358.6 235 74.0
Atru.chr4.1882 Acer truncatum HOM05D006155 ORTHO05D007529 6.0e-96 354.8 223 74.4
arahy.Tifrunner.gnm1.ann1.NLE1X5 Arachis hypogaea HOM05D006155 ORTHO05D007529 1.3e-95 353.6 263 65.8
Haze_11491 Corylus avellana HOM05D006155 ORTHO05D007529 1.7e-95 353.2 231 72.3
Manes.15G047200 Manihot esculenta HOM05D006155 ORTHO05D007529 5.1e-95 351.7 245 70.6
arahy.Tifrunner.gnm1.ann1.L647M7 Arachis hypogaea HOM05D006155 ORTHO05D007529 6.6e-95 351.3 245 68.2
Prupe.1G052300 Prunus persica HOM05D006155 ORTHO05D007529 6.6e-95 351.3 242 68.6
Thecc.04G268500 Theobroma cacao HOM05D006155 ORTHO05D007529 6.6e-95 351.3 238 69.3
Duzib151G0563 Durio zibethinus HOM05D006155 ORTHO05D007529 8.7e-95 350.9 234 69.7
Ciclev10005577m.g Citrus clementina HOM05D006155 ORTHO05D007529 1.5e-94 350.1 239 68.6
Actinidia35935 Actinidia chinensis HOM05D006155 ORTHO05D007529 1.9e-94 349.7 226 72.6
Eucgr.H02890 Eucalyptus grandis HOM05D006155 ORTHO05D007529 1.9e-94 349.7 220 72.7
Lj6C638T14 Lonicera japonica HOM05D006155 ORTHO05D007529 1.9e-94 349.7 229 70.3
Rhsim09G0042400 Rhododendron simsii HOM05D006155 ORTHO05D007529 1.9e-94 349.7 246 67.9
COL.COLO4_15996 Corchorus olitorius HOM05D006155 ORTHO05D007529 3.3e-94 349.0 216 73.6
THA.LOC104816010 Tarenaya hassleriana HOM05D006155 ORTHO05D007529 4.3e-94 348.6 222 72.1
Lju2262C0T14 Lonicera japonica HOM05D006155 ORTHO05D007529 7.3e-94 347.8 229 69.9
PGR004G1196 Punica granatum HOM05D006155 ORTHO05D007529 7.3e-94 347.8 214 73.4
Sabra10G0043200 Salix brachista HOM05D006155 ORTHO05D007529 7.3e-94 347.8 231 69.7
Actinidia32965 Actinidia chinensis HOM05D006155 ORTHO05D007529 9.6e-94 347.4 221 72.9
Cfa014810 Carpinus fangiana HOM05D006155 ORTHO05D007529 1.6e-93 346.7 231 71.0
SalBow3G4628 Salvia bowleyana HOM05D006155 ORTHO05D007529 1.6e-93 346.7 237 66.7
Potri.010G063700 Populus trichocarpa HOM05D006155 ORTHO05D007529 2.8e-93 345.9 236 68.6
Sopen09g033690 Solanum pennellii HOM05D006155 ORTHO05D007529 2.8e-93 345.9 228 69.7
BolC4t27754H Brassica oleracea HOM05D006155 ORTHO05D007529 3.6e-93 345.5 231 68.0
MD16G1230400 Malus domestica HOM05D006155 ORTHO05D007529 3.6e-93 345.5 239 67.8
Aqoxy2G03758 Aquilegia oxysepala HOM05D006155 ORTHO05D007529 4.7e-93 345.1 214 73.8
BcaC02g07846 Brassica carinata HOM05D006155 ORTHO05D007529 6.2e-93 344.7 215 71.2
C04p62700 Brassica napus HOM05D006155 ORTHO05D007529 6.2e-93 344.7 231 68.4
RcHm_v2.0_Chr4g0396071 Rosa chinensis HOM05D006155 ORTHO05D007529 6.2e-93 344.7 244 67.6
Solyc09g090750.3 Solanum lycopersicum HOM05D006155 ORTHO05D007529 1.1e-92 344.0 231 68.8
PGSC0003DMG400001560 Solanum tuberosum HOM05D006155 ORTHO05D007529 1.1e-92 344.0 228 69.3
BraA03t11126Z Brassica rapa HOM05D006155 ORTHO05D007529 1.4e-92 343.6 225 68.4
BraA04t18060Z Brassica rapa HOM05D006155 ORTHO05D007529 1.4e-92 343.6 224 67.9
FvH4_4g05140 Fragaria vesca HOM05D006155 ORTHO05D007529 1.8e-92 343.2 242 67.8
FAN12G3888 Fragaria x ananassa HOM05D006155 ORTHO05D007529 2.4e-92 342.8 242 67.8
A03p18670 Brassica napus HOM05D006155 ORTHO05D007529 3.1e-92 342.4 235 67.7
CSS0040589 Camellia sinensis var. sinensis HOM05D006155 ORTHO05D007529 3.1e-92 342.4 260 63.5
CANSAT78G1287 Cannabis sativa HOM05D006155 ORTHO05D007529 3.1e-92 342.4 229 70.7
Dinv27131 Davidia involucrata HOM05D006155 ORTHO05D007529 3.1e-92 342.4 238 67.6
Sp4g15560 Schrenkiella parvula HOM05D006155 ORTHO05D007529 4.0e-92 342.0 224 68.3
GSVIVG01027954001 Vitis vinifera HOM05D006155 ORTHO05D007529 4.0e-92 342.0 225 70.2
BolC3t14563H Brassica oleracea HOM05D006155 ORTHO05D007529 9.0e-92 340.9 230 68.7
CAN.G812.29 Capsicum annuum HOM05D006155 ORTHO05D007529 9.0e-92 340.9 242 64.9
Lalb_Chr02g0150741 Lupinus albus HOM05D006155 ORTHO05D007529 9.0e-92 340.9 228 68.4
Aa31LG5G4150 Aethionema arabicum HOM05D006155 ORTHO05D007529 1.5e-91 340.1 251 64.9
BcaC01g05849 Brassica carinata HOM05D006155 ORTHO05D007529 1.5e-91 340.1 216 71.3
EL10Ac3g06713 Beta vulgaris HOM05D006155 ORTHO05D007529 2.0e-91 339.7 234 68.4
Hma1.2p1_0042F.1_g025650 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 2.0e-91 339.7 240 67.1
Lsat_1_v5_gn_1_76101 Lactuca sativa HOM05D006155 ORTHO05D007529 2.0e-91 339.7 215 71.6
Nitab4.5_0003474g0030 Nicotiana tabacum HOM05D006155 ORTHO05D007529 2.0e-91 339.7 247 65.2
C03p21810 Brassica napus HOM05D006155 ORTHO05D007529 2.6e-91 339.3 230 68.3
Oeu055271.1 Olea europaea HOM05D006155 ORTHO05D007529 3.4e-91 339.0 246 65.0
TWI09G0038 Tripterygium wilfordii HOM05D006155 ORTHO05D007529 3.4e-91 339.0 226 69.0
Migut.N00320 Erythranthe guttata HOM05D006155 ORTHO05D007529 4.4e-91 338.6 223 70.0
SGA_v2.0_scaffold285G47059 Striga asiatica HOM05D006155 ORTHO05D007529 4.4e-91 338.6 234 68.4
MSTRG.24647 Avicennia marina HOM05D006155 ORTHO05D007529 5.8e-91 338.2 242 66.9
PSO063G0276 Papaver somniferum HOM05D006155 ORTHO05D007529 5.8e-91 338.2 223 70.9
Nitab4.5_0002937g0030 Nicotiana tabacum HOM05D006155 ORTHO05D007529 9.9e-91 337.4 250 64.8
BcaB06g28663 Brassica carinata HOM05D006155 ORTHO05D007529 1.7e-90 336.7 235 66.0
BcaC02g07849 Brassica carinata HOM05D006155 ORTHO05D007529 1.7e-90 336.7 235 66.0
AT2G33255 Arabidopsis thaliana HOM05D006155 ORTHO05D007529 2.9e-90 335.9 224 67.0
AL4G28890 Arabidopsis lyrata HOM05D006155 ORTHO05D007529 3.8e-90 335.5 221 67.9
Carub.0004s1472 Capsella rubella HOM05D006155 ORTHO05D007529 3.8e-90 335.5 215 69.3
Phvul.L001872 Phaseolus vulgaris HOM05D006155 ORTHO05D007529 4.9e-90 335.1 224 70.5
Ah.13g074940 Amaranthus hybridus HOM05D006155 ORTHO05D007529 6.4e-90 334.7 250 64.8
Oeu023143.1 Olea europaea HOM05D006155 ORTHO05D007529 6.4e-90 334.7 224 67.0
Thhalv10017161m.g Eutrema salsugineum HOM05D006155 ORTHO05D007529 1.1e-89 334.0 231 66.2
Cc03_g06750 Coffea canephora HOM05D006155 ORTHO05D007529 4.2e-89 332.0 239 64.9
Ca_09794_v3 Cicer arietinum L. HOM05D006155 ORTHO05D007529 5.4e-89 331.6 230 66.5
HanXRQChr01g0022501 Helianthus annuus HOM05D006155 ORTHO05D007529 9.3e-89 330.9 243 64.2
DCAR_002295 Daucus carota HOM05D006155 ORTHO05D007529 1.6e-88 330.1 228 67.1
Glyma.20G199100 Glycine max HOM05D006155 ORTHO05D007529 1.6e-88 330.1 215 71.6
Glyma.10G191200 Glycine max HOM05D006155 ORTHO05D007529 2.7e-88 329.3 223 69.5
VMungo0720G0761 Vigna mungo HOM05D006155 ORTHO05D007529 2.7e-88 329.3 234 67.9
Duzib212G0768 Durio zibethinus HOM05D006155 ORTHO05D007529 3.5e-88 328.9 221 67.9
CDE02G2305 Ceratophyllum demersum HOM05D006155 ORTHO05D007529 4.6e-88 328.6 217 70.5
FAN22G1742 Fragaria x ananassa HOM05D006155 ORTHO05D007529 7.8e-88 327.8 263 62.0
Medtr1g073140 Medicago truncatula HOM05D006155 ORTHO05D007529 7.8e-88 327.8 228 66.2
Lj5g0009281 Lotus japonicus HOM05D006155 ORTHO05D007529 1.0e-87 327.4 261 60.9
CARHR127260 Cardamine hirsuta HOM05D006155 ORTHO05D007529 1.3e-87 327.0 224 66.1
TPR.G18563 Trifolium pratense HOM05D006155 ORTHO05D007529 2.3e-87 326.2 218 67.9
FAN17G0987 Fragaria x ananassa HOM05D006155 ORTHO05D007529 1.5e-86 323.6 232 67.2
Nn3g19816 Nelumbo nucifera HOM05D006155 ORTHO05D007529 3.3e-86 322.4 206 71.4
Hund20478 Selenicereus undatus HOM05D006155 ORTHO05D007529 2.8e-85 319.3 205 71.7
Peaxi162Scf00125g01318 Petunia axillaris HOM05D006155 ORTHO05D007529 1.1e-84 317.4 232 63.8
Os02g0816100 Oryza sativa ssp. japonica HOM05D006155 ORTHO05D007529 1.4e-84 317.0 247 63.2
ECA248G1656 Erigeron canadensis HOM05D006155 ORTHO05D007529 2.4e-84 316.2 195 72.3
vmacro00537 Vaccinium macrocarpon HOM05D006155 ORTHO05D007529 4.0e-84 315.5 337 50.1
unitig_899.g15552 Utricularia gibba HOM05D006155 ORTHO05D007529 6.4e-82 308.1 307 53.4
HPP92_007421 Vanilla planifolia HOM05D006155 ORTHO05D007529 3.0e-79 299.3 197 70.6
ATR0787G199 Amborella trichopoda HOM05D006155 ORTHO05D007529 6.9e-76 288.1 206 67.0
Cpa.g.sc3.348 Carica papaya HOM05D006155 ORTHO05D007529 2.6e-75 286.2 180 75.0
MBI07_g08907_MAGBIO Magnolia biondii HOM05D006155 ORTHO05D007529 3.2e-73 279.3 191 70.7
Sc04g0004680 Simmondsia chinensis HOM05D006155 ORTHO05D007529 1.9e-70 270.0 164 73.8
SMO165G0032 Selaginella moellendorffii HOM05D006155 ORTHO05D007529 3.7e-69 265.8 220 59.1
CDE01G0085 Ceratophyllum demersum HOM05D006155 ORTHO05D007529 1.1e-65 254.2 232 56.0
Pp3c17_6550 Physcomitrium patens HOM05D006155 ORTHO05D007529 4.6e-64 248.8 233 51.9
Pp3c2_6750 Physcomitrium patens HOM05D006155 ORTHO05D007529 1.4e-57 227.3 212 50.0
TAR365G0649 Trochodendron aralioides HOM05D006155 ORTHO05D007529 1.8e-52 210.3 139 71.2
LjContig00022g0011299 Lotus japonicus HOM05D006155 ORTHO05D007529 6.5e-50 201.8 183 57.4
Psat6g138760 Pisum sativum HOM05D006155 ORTHO05D007529 4.4e-46 189.1 130 68.5
MCO11G090 Micromonas commoda HOM05D006155 ORTHO05D007529 1.4e-44 184.1 219 46.1
CiPaw.01G175800 Carya illinoinensis HOM05D006155 ORTHO05D007529 2.0e-43 180.3 101 79.2
Cre03.g193000 Chlamydomonas reinhardtii HOM05D006155 ORTHO05D007529 3.0e-39 166.4 213 43.2
QL06p021877 Quercus lobata HOM05D006155 ORTHO05D007529 5.3e-36 155.6 96 76.0
SMO115G0208 Selaginella moellendorffii HOM05D006155 ORTHO05D007529 3.8e-34 149.4 210 40.0
Zm00001eb191500 Zea mays HOM05D006155 ORTHO05D007529 1.9e-33 147.1 130 59.2
Rhsim09G0043000 Rhododendron simsii HOM05D006155 ORTHO05D007529 9.4e-33 144.8 116 62.9
Hma1.2p1_0042F.1_g025660 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 1.8e-31 140.6 91 71.4
Hma1.2p1_0144F.1_g065125 Hydrangea macrophylla HOM05D006155 ORTHO05D007529 1.8e-31 140.6 91 71.4
SGA_v2.0_scaffold31G12610 Striga asiatica HOM05D006155 ORTHO05D007529 1.8e-31 140.6 196 41.3
AUR62035887 Chenopodium quinoa HOM05D006155 ORTHO05D007529 6.8e-31 138.7 89 71.9
Lj5g0004239 Lotus japonicus HOM05D006155 ORTHO05D007529 5.9e-27 125.6 137 51.1
Lj5g0006737 Lotus japonicus HOM05D006155 ORTHO05D007529 5.9e-27 125.6 137 51.1
SEGI_12787 Sequoiadendron giganteum HOM05D006155 ORTHO05D007529 2.2e-26 123.6 103 58.3
Rhsim09G0041400 Rhododendron simsii HOM05D000030 ORTHO05D000009 2.1e-24 117.1 94 59.6
SEGI_32209 Sequoiadendron giganteum HOM05D006155 ORTHO05D007529 1.7e-21 107.5 80 65.0
Rhsim09G0048000 Rhododendron simsii HOM05D000029 ORTHO05D002162 3.1e-20 103.2 97 57.7
Actinidia37388 Actinidia chinensis HOM05D006155 ORTHO05D007529 1.3e-18 97.8 61 73.8
Cre01.g025100 Chlamydomonas reinhardtii HOM05D006155 ORTHO05D007529 4.2e-17 92.8 207 31.4
PRCOL_00006483 Prasinoderma coloniale HOM05D005540 ORTHO05D006932 4.0e-15 86.3 180 33.9
SGA_v2.0_scaffold31G12618 Striga asiatica HOM05D006155 ORTHO05D007529 4.4e-14 82.8 188 32.4
SalBow7G2104 Salvia bowleyana HOM05D000708 ORTHO05D001418 2.4e-12 77.0 48 70.8
AUR62035886 Chenopodium quinoa HOM05D006155 ORTHO05D007529 2.0e-11 73.9 52 63.5
C09p23060 Brassica napus HOM05D006155 ORTHO05D007529 4.5e-11 72.8 74 51.4


User provided reference genes

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