Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006342.2 Cucumis melo HOM05D005430 ORTHO05D007814 2.7e-163 578.6 282 100.0
Sed0021677 Sechium edule HOM05D005430 ORTHO05D007814 9.8e-73 277.7 143 91.6
Sed0020493 Sechium edule HOM05D005430 ORTHO05D007814 1.1e-71 274.2 143 90.9
CsaV3_3G011340 Cucumis sativus L. HOM05D005430 ORTHO05D007814 3.2e-71 272.7 219 65.3
ClCG05G003630 Citrullus lanatus HOM05D005430 ORTHO05D007814 3.5e-62 242.7 118 94.9
Prupe.1G058400 Prunus persica HOM05D005430 ORTHO05D007814 8.6e-53 211.5 143 67.1
FvH4_4g05670 Fragaria vesca HOM05D005430 ORTHO05D007814 5.6e-52 208.8 143 66.4
RcHm_v2.0_Chr4g0396841 Rosa chinensis HOM05D005430 ORTHO05D007814 7.3e-52 208.4 143 66.4
FAN17G1087 Fragaria x ananassa HOM05D005430 ORTHO05D007814 2.8e-51 206.5 143 65.7
MD16G1234100 Malus domestica HOM05D005430 ORTHO05D007814 1.1e-50 204.5 143 65.0
QL06p023021 Quercus lobata HOM05D005430 ORTHO05D007814 1.4e-50 204.1 122 74.6
QL11p023894 Quercus lobata HOM05D005430 ORTHO05D007814 5.2e-50 202.2 122 73.8
CiPaw.01G204600 Carya illinoinensis HOM05D005430 ORTHO05D007814 8.9e-50 201.4 118 76.3
FAN12G0934 Fragaria x ananassa HOM05D005430 ORTHO05D007814 8.9e-50 201.4 142 65.5
MD13G1228600 Malus domestica HOM05D005430 ORTHO05D007814 1.3e-48 197.6 143 65.0
Sed0023963 Sechium edule HOM05D005430 ORTHO05D007814 1.3e-48 197.6 148 64.2
Haze_11548 Corylus avellana HOM05D005430 ORTHO05D007814 2.9e-48 196.4 150 64.0
Potri.003G175200 Populus trichocarpa HOM05D005430 ORTHO05D007814 2.9e-48 196.4 143 63.6
QL12p006673 Quercus lobata HOM05D005430 ORTHO05D007814 4.9e-48 195.7 147 66.7
Sabra03G0128400 Salix brachista HOM05D005430 ORTHO05D007814 6.4e-48 195.3 177 54.8
MELO3C023093.2 Cucumis melo HOM05D005430 ORTHO05D007814 8.4e-48 194.9 144 63.9
Duzib212G0862 Durio zibethinus HOM05D005430 ORTHO05D007814 8.4e-48 194.9 154 61.7
FAN07G2372 Fragaria x ananassa HOM05D005430 ORTHO05D007814 1.1e-47 194.5 124 69.4
QL05p063758 Quercus lobata HOM05D005430 ORTHO05D007814 1.1e-47 194.5 123 74.0
Cfa014874 Carpinus fangiana HOM05D005430 ORTHO05D007814 1.4e-47 194.1 146 65.1
Cpa.g.sc59.85 Carica papaya HOM05D005430 ORTHO05D007814 3.2e-47 193.0 142 64.1
Potri.001G053100 Populus trichocarpa HOM05D005430 ORTHO05D007814 9.2e-47 191.4 143 61.5
QL05p063717 Quercus lobata HOM05D005430 ORTHO05D007814 1.2e-46 191.0 114 74.6
Sabra01G0037500 Salix brachista HOM05D006492 ORTHO05D008432 1.2e-46 191.0 126 68.3
Thecc.04G212700 Theobroma cacao HOM05D005430 ORTHO05D007814 1.6e-46 190.7 149 62.4
FAN22G2342 Fragaria x ananassa HOM05D005430 ORTHO05D007814 2.1e-46 190.3 124 67.7
Manes.03G153100 Manihot esculenta HOM05D005430 ORTHO05D007814 2.7e-46 189.9 143 62.9
Atru.chr4.1803 Acer truncatum HOM05D005430 ORTHO05D007814 7.8e-46 188.3 145 63.4
Gohir.A10G120900 Gossypium hirsutum HOM05D005430 ORTHO05D007814 7.8e-46 188.3 154 59.7
Gohir.D10G145400 Gossypium hirsutum HOM05D005430 ORTHO05D007814 7.8e-46 188.3 154 59.7
Gorai.011G162600 Gossypium raimondii HOM05D005430 ORTHO05D007814 7.8e-46 188.3 154 59.7
Ciclev10006174m.g Citrus clementina HOM05D005430 ORTHO05D007814 1.7e-45 187.2 143 60.8
CsaV3_2G012000 Cucumis sativus L. HOM05D005430 ORTHO05D007814 5.1e-45 185.7 114 71.9
Manes.15G049100 Manihot esculenta HOM05D005430 ORTHO05D007814 1.5e-44 184.1 143 60.8
COL.COLO4_34091 Corchorus olitorius HOM05D005430 ORTHO05D007814 5.6e-44 182.2 125 68.0
Dinv38286 Davidia involucrata HOM05D005430 ORTHO05D007814 7.3e-44 181.8 114 72.8
CANSAT78G1772 Cannabis sativa HOM05D005430 ORTHO05D007814 1.2e-43 181.0 145 60.7
CANSAT78G2053 Cannabis sativa HOM05D005430 ORTHO05D007814 1.2e-43 181.0 145 60.7
Lsat_1_v5_gn_6_62741 Lactuca sativa HOM05D005430 ORTHO05D007814 1.4e-42 177.6 116 68.1
Eucgr.H00103 Eucalyptus grandis HOM05D005430 ORTHO05D007814 2.4e-42 176.8 146 62.3
TWI73G0050 Tripterygium wilfordii HOM05D005430 ORTHO05D007814 2.4e-42 176.8 146 63.0
Sed0027066 Sechium edule HOM05D005430 ORTHO05D007814 8.9e-42 174.9 147 57.1
THA.LOC104821619 Tarenaya hassleriana HOM05D005430 ORTHO05D007814 5.8e-41 172.2 138 58.7
Psat1g167840 Pisum sativum HOM05D005430 ORTHO05D007814 1.3e-40 171.0 146 56.8
CSS0041852 Camellia sinensis var. sinensis HOM05D005430 ORTHO05D007814 1.7e-40 170.6 141 60.3
GSVIVG01029041001 Vitis vinifera HOM05D005430 ORTHO05D007814 3.8e-40 169.5 143 56.6
Glyma.15G129600 Glycine max HOM05D005430 ORTHO05D007814 4.2e-39 166.0 146 54.8
Phvul.006G128700 Phaseolus vulgaris HOM05D005430 ORTHO05D007814 5.4e-39 165.6 146 54.8
Medtr2g030100 Medicago truncatula HOM05D005430 ORTHO05D007814 7.1e-39 165.2 146 54.8
VMungo0540G1768 Vigna mungo HOM05D005430 ORTHO05D007814 9.3e-39 164.9 146 54.8
Thhalv10003022m.g Eutrema salsugineum HOM05D005430 ORTHO05D007814 1.6e-38 164.1 143 55.2
AL8G20530 Arabidopsis lyrata HOM05D005430 ORTHO05D007814 2.1e-38 163.7 126 58.7
HanXRQChr07g0185851 Helianthus annuus HOM05D005430 ORTHO05D007814 2.7e-38 163.3 150 56.7
CAN.G1745.2 Capsicum annuum HOM05D005430 ORTHO05D007814 3.5e-38 162.9 148 52.7
TPR.G26356 Trifolium pratense HOM05D005430 ORTHO05D007814 3.5e-38 162.9 146 54.1
AT3G24060 Arabidopsis thaliana HOM05D005430 ORTHO05D007814 1.7e-37 160.6 142 54.2
Glyma.09G023500 Glycine max HOM05D005430 ORTHO05D007814 1.7e-37 160.6 146 52.7
AL3G39310 Arabidopsis lyrata HOM05D005430 ORTHO05D007814 3.0e-37 159.8 142 54.2
Hma1.2p1_0903F.1_g235070 Hydrangea macrophylla HOM05D005430 ORTHO05D007814 3.9e-37 159.5 138 52.9
Lalb_Chr15g0088741 Lupinus albus HOM05D005430 ORTHO05D007814 3.9e-37 159.5 147 51.7
Solyc12g098110.1 Solanum lycopersicum HOM05D005430 ORTHO05D007814 3.9e-37 159.5 113 61.1
Sopen12g032930 Solanum pennellii HOM05D005430 ORTHO05D007814 3.9e-37 159.5 113 61.1
Medtr2g030080 Medicago truncatula HOM05D005430 ORTHO05D007814 5.1e-37 159.1 146 53.4
arahy.Tifrunner.gnm1.ann1.D09HZI Arachis hypogaea HOM05D005430 ORTHO05D007814 6.6e-37 158.7 137 54.0
Oeu033089.1 Olea europaea HOM05D005430 ORTHO05D007814 6.6e-37 158.7 144 54.9
Oeu041168.1 Olea europaea HOM05D005430 ORTHO05D007814 6.6e-37 158.7 138 55.1
PGSC0003DMG400016877 Solanum tuberosum HOM05D005430 ORTHO05D007814 6.6e-37 158.7 113 61.1
Carub.0003s2446 Capsella rubella HOM05D005430 ORTHO05D007814 1.5e-36 157.5 120 58.3
TPR.G26323 Trifolium pratense HOM05D005430 ORTHO05D007814 1.5e-36 157.5 137 53.3
Sp3g21900 Schrenkiella parvula HOM05D005430 ORTHO05D007814 2.5e-36 156.8 145 53.8
Solyc09g091360.1 Solanum lycopersicum HOM05D005430 ORTHO05D007814 4.3e-36 156.0 145 49.0
Rhsim06G0013100 Rhododendron simsii HOM05D005430 ORTHO05D007814 7.3e-36 155.2 111 64.0
CARHR100160 Cardamine hirsuta HOM05D005430 ORTHO05D007814 9.6e-36 154.8 151 49.0
BcaB04g20397 Brassica carinata HOM05D005430 ORTHO05D007814 1.3e-35 154.5 145 53.1
HanXRQChr02g0059521 Helianthus annuus HOM05D005430 ORTHO05D007814 1.6e-35 154.1 146 49.3
CAN.G706.30 Capsicum annuum HOM05D005430 ORTHO05D007814 2.8e-35 153.3 149 52.3
SGA_v2.0_scaffold2G00855 Striga asiatica HOM05D005430 ORTHO05D007814 2.8e-35 153.3 114 60.5
A01p31010 Brassica napus HOM05D005430 ORTHO05D007814 3.6e-35 152.9 142 52.8
BraA01t03227Z Brassica rapa HOM05D005430 ORTHO05D007814 3.6e-35 152.9 142 52.8
Migut.N00331 Erythranthe guttata HOM05D005430 ORTHO05D007814 1.4e-34 151.0 140 54.3
SalBow3G0850 Salvia bowleyana HOM05D005430 ORTHO05D007814 2.6e-33 146.7 116 58.6
Sc13g0002820 Simmondsia chinensis HOM05D005430 ORTHO05D007814 3.4e-33 146.4 121 53.7
BolC1t03901H Brassica oleracea HOM05D005430 ORTHO05D007814 9.3e-31 138.3 135 51.1
C01p39510 Brassica napus HOM05D005430 ORTHO05D007814 1.6e-30 137.5 135 50.4
Nitab4.5_0008614g0010 Nicotiana tabacum HOM05D005430 ORTHO05D007814 3.5e-30 136.3 127 53.5
SHI00018 Sapria himalayana HOM05D005430 ORTHO05D007814 1.3e-29 134.4 126 52.4
EL10Ac3g06777 Beta vulgaris HOM05D005430 ORTHO05D007814 4.8e-27 125.9 98 58.2
vmacro22822 Vaccinium macrocarpon HOM05D005430 ORTHO05D007814 1.7e-24 117.5 115 52.2
Actinidia25081 Actinidia chinensis HOM05D005430 ORTHO05D007814 5.5e-23 112.5 112 54.5
Migut.G00603 Erythranthe guttata HOM05D005430 ORTHO05D007814 8.1e-19 98.6 115 42.6
Duzib212G0436 Durio zibethinus HOM05D005430 ORTHO05D007814 3.4e-17 93.2 146 32.9
Nitab4.5_0003185g0070 Nicotiana tabacum HOM05D005430 ORTHO05D007814 3.4e-17 93.2 90 54.4
Cpa.g.sc59.81 Carica papaya HOM05D005430 ORTHO05D000119 1.0e-16 91.7 111 39.6
RcHm_v2.0_Chr4g0396551 Rosa chinensis HOM05D005430 ORTHO05D000119 1.3e-16 91.3 112 38.4
COL.COLO4_34097 Corchorus olitorius HOM05D005430 ORTHO05D007814 8.4e-16 88.6 147 34.7
SalBow2G0067 Salvia bowleyana HOM05D005430 ORTHO05D000119 1.9e-15 87.4 116 37.1
Gorai.006G055200 Gossypium raimondii HOM05D005430 ORTHO05D007814 3.2e-15 86.7 141 34.8
Gohir.A09G053500 Gossypium hirsutum HOM05D005430 ORTHO05D000119 4.2e-15 86.3 141 34.8
COL.COLO4_34098 Corchorus olitorius HOM05D000048 ORTHO05D000207 5.5e-15 85.9 131 32.8
Gohir.D09G053032 Gossypium hirsutum HOM05D005430 ORTHO05D007814 2.1e-14 84.0 141 34.8
Thecc.04G213200 Theobroma cacao HOM05D005430 ORTHO05D007814 2.1e-14 84.0 149 32.2
Cpa.g.sc169.24 Carica papaya HOM05D000256 ORTHO05D000119 1.3e-13 81.3 137 32.1
Oeu024845.1 Olea europaea HOM05D005430 ORTHO05D007814 1.3e-13 81.3 118 35.6
Cpa.g.sc12.57 Carica papaya HOM05D005430 ORTHO05D007814 1.8e-13 80.9 116 37.1
Hma1.2p1_0146F.1_g065570 Hydrangea macrophylla HOM05D005430 ORTHO05D000119 1.8e-13 80.9 153 35.9
Duzib151G1037 Durio zibethinus HOM05D005430 ORTHO05D007814 3.0e-13 80.1 117 32.5
Migut.H02432 Erythranthe guttata HOM05D005430 ORTHO05D000119 3.9e-13 79.7 108 37.0
Thecc.04G213100 Theobroma cacao HOM05D005430 ORTHO05D007814 8.7e-13 78.6 122 32.8
COL.COLO4_05736 Corchorus olitorius HOM05D005430 ORTHO05D007814 1.5e-12 77.8 114 34.2
Migut.G00604 Erythranthe guttata HOM05D005430 ORTHO05D007814 1.5e-12 77.8 111 35.1
Hma1.2p1_0170F.1_g075380 Hydrangea macrophylla HOM05D005430 ORTHO05D000119 1.9e-12 77.4 118 36.4
Gohir.D09G053020 Gossypium hirsutum HOM05D005430 ORTHO05D007814 3.3e-12 76.6 150 32.7
Hma1.2p1_0903F.1_g234940 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 5.7e-12 75.9 121 37.2
SGA_v2.0_scaffold57G20177 Striga asiatica HOM05D005430 ORTHO05D000119 7.4e-12 75.5 116 32.8
Gorai.006G055400 Gossypium raimondii HOM05D005430 ORTHO05D007814 9.6e-12 75.1 150 32.0
Hma1.2p1_0146F.1_g065590 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 9.6e-12 75.1 155 33.5
Hma1.2p1_0453F.1_g156140 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 9.6e-12 75.1 117 36.8
COL.COLO4_05734 Corchorus olitorius HOM05D005430 ORTHO05D007814 1.6e-11 74.3 119 31.9
Hma1.2p1_1359F.1_g278050 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 2.1e-11 73.9 119 36.1
Gohir.A09G053300 Gossypium hirsutum HOM05D005430 ORTHO05D007814 2.8e-11 73.6 150 33.3
COL.COLO4_34096 Corchorus olitorius HOM05D005430 ORTHO05D007814 3.7e-11 73.2 149 30.9
Migut.F01972 Erythranthe guttata HOM05D000256 ORTHO05D000119 3.7e-11 73.2 141 34.8
Thecc.04G215700 Theobroma cacao HOM05D005430 ORTHO05D007814 4.8e-11 72.8 149 30.2
Migut.J01121 Erythranthe guttata HOM05D000256 ORTHO05D000119 6.3e-11 72.4 122 32.8
QL09p044329 Quercus lobata HOM05D000256 ORTHO05D000119 1.8e-10 70.9 121 29.8
COL.COLO4_05733 Corchorus olitorius HOM05D005430 ORTHO05D007814 4.1e-10 69.7 125 32.8
Hma1.2p1_1359F.1_g278080 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 5.3e-10 69.3 153 33.3
PGR083G1564 Punica granatum HOM05D005430 ORTHO05D007814 5.3e-10 69.3 94 38.3
Gohir.D05G318200 Gossypium hirsutum HOM05D005430 ORTHO05D007814 1.5e-09 67.8 112 31.2
PGR044G0746 Punica granatum HOM05D000256 ORTHO05D000119 1.5e-09 67.8 115 36.5
Gorai.009G341000 Gossypium raimondii HOM05D005430 ORTHO05D007814 2.0e-09 67.4 112 31.2
Potri.001G053300 Populus trichocarpa HOM05D005430 ORTHO05D007814 3.4e-09 66.6 118 28.0
Rhsim03G0222400 Rhododendron simsii HOM05D005430 ORTHO05D007814 7.6e-09 65.5 180 28.9
SalBow4G3236 Salvia bowleyana HOM05D000256 ORTHO05D000119 7.6e-09 65.5 112 30.4
Oeu008822.1 Olea europaea HOM05D000256 ORTHO05D000119 1.0e-08 65.1 155 33.5
PGR044G1572 Punica granatum HOM05D000256 ORTHO05D000119 1.0e-08 65.1 115 33.9
SalBow4G1538 Salvia bowleyana HOM05D000256 ORTHO05D000119 1.0e-08 65.1 132 28.8
SalBow2G2503 Salvia bowleyana HOM05D005430 ORTHO05D000119 1.7e-08 64.3 118 30.5
SalBow4G0962 Salvia bowleyana HOM05D000256 ORTHO05D000119 1.7e-08 64.3 112 30.4
SalBow7G1990 Salvia bowleyana HOM05D000256 ORTHO05D000119 2.9e-08 63.5 112 35.7
CAN.G742.38 Capsicum annuum HOM05D000256 ORTHO05D000119 3.8e-08 63.2 150 28.7
Phvul.011G169288 Phaseolus vulgaris HOM05D000256 ORTHO05D000119 3.8e-08 63.2 79 40.5
Potri.003G201300 Populus trichocarpa HOM05D005430 ORTHO05D000119 5.0e-08 62.8 118 28.8
unitig_699.g19174 Utricularia gibba HOM05D000256 ORTHO05D000119 5.0e-08 62.8 86 39.5
SalBow7G0504 Salvia bowleyana HOM05D000256 ORTHO05D000119 6.5e-08 62.4 112 34.8
Migut.G00680 Erythranthe guttata HOM05D005430 ORTHO05D000119 8.4e-08 62.0 142 31.7
SGA_v2.0_scaffold1G00733 Striga asiatica HOM05D000256 ORTHO05D000119 8.4e-08 62.0 120 32.5
TAR362G1185 Trochodendron aralioides HOM05D000256 ORTHO05D000119 8.4e-08 62.0 138 28.3
COL.COLO4_05731 Corchorus olitorius HOM05D005430 ORTHO05D007814 1.1e-07 61.6 119 28.6
Migut.F01649 Erythranthe guttata HOM05D000256 ORTHO05D000119 1.1e-07 61.6 133 30.8
Hma1.2p1_2329F.1_g320010 Hydrangea macrophylla HOM05D000256 ORTHO05D000119 1.1e-07 61.6 143 31.5
Ciclev10023262m.g Citrus clementina HOM05D005430 ORTHO05D007814 1.4e-07 61.2 87 28.7
Migut.F01908 Erythranthe guttata HOM05D000256 ORTHO05D000119 1.9e-07 60.8 122 32.8
Nitab4.5_0004762g0080 Nicotiana tabacum HOM05D000256 ORTHO05D000119 1.9e-07 60.8 110 30.0
Glyma.01G142000 Glycine max HOM05D000256 ORTHO05D000119 2.5e-07 60.5 124 28.2
Gohir.A05G316800 Gossypium hirsutum HOM05D005430 ORTHO05D007814 4.2e-07 59.7 112 28.6
COL.COLO4_05730 Corchorus olitorius HOM05D005430 ORTHO05D007814 5.5e-07 59.3 117 29.1
Glyma.01G142100 Glycine max HOM05D000256 ORTHO05D000119 5.5e-07 59.3 145 27.6
SGA_v2.0_scaffold114G31929 Striga asiatica HOM05D000256 ORTHO05D000119 5.5e-07 59.3 116 26.7
SGA_v2.0_scaffold2G01339 Striga asiatica HOM05D000256 ORTHO05D000119 5.5e-07 59.3 108 30.6
Oeu051793.1 Olea europaea HOM05D000256 ORTHO05D000119 7.2e-07 58.9 142 31.7
Migut.F01928 Erythranthe guttata HOM05D000256 ORTHO05D000119 9.3e-07 58.5 114 30.7
Gohir.A11G198542 Gossypium hirsutum HOM05D000256 ORTHO05D000119 9.3e-07 58.5 114 28.1
Gorai.007G244400 Gossypium raimondii HOM05D000256 ORTHO05D000119 1.6e-06 57.8 114 28.1
Lsat_1_v5_gn_8_12180 Lactuca sativa HOM05D000256 ORTHO05D000119 1.6e-06 57.8 109 32.1
GSVIVG01014873001 Vitis vinifera HOM05D000256 ORTHO05D000119 2.1e-06 57.4 111 34.2
FAN19G2757 Fragaria x ananassa HOM05D000256 ORTHO05D000119 2.7e-06 57.0 112 33.0
Haze_24742 Corylus avellana HOM05D000256 ORTHO05D000119 4.6e-06 56.2 149 28.2
FvH4_4g05650 Fragaria vesca HOM05D008849 ORTHO05D010556 4.6e-06 56.2 143 30.1
Nitab4.5_0000401g0140 Nicotiana tabacum HOM05D000256 ORTHO05D000119 4.6e-06 56.2 125 30.4
Potri.001G053200 Populus trichocarpa HOM05D008849 ORTHO05D010556 4.6e-06 56.2 109 31.2
SGA_v2.0_scaffold2G01340 Striga asiatica HOM05D000256 ORTHO05D000119 4.6e-06 56.2 127 26.8
Migut.F01754 Erythranthe guttata HOM05D000256 ORTHO05D000119 6.1e-06 55.8 143 31.5
Prupe.1G062500 Prunus persica HOM05D000256 ORTHO05D000119 7.9e-06 55.5 121 32.2
Sopen05g031950 Solanum pennellii HOM05D000256 ORTHO05D000119 7.9e-06 55.5 113 31.9
PGSC0003DMG400037803 Solanum tuberosum HOM05D000256 ORTHO05D000119 7.9e-06 55.5 94 34.0


User provided reference genes

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