Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006272.2 Cucumis melo HOM05D007595 ORTHO05D009570 1.8e-169 599.4 350 100.0
CsaV3_3G010510 Cucumis sativus L. HOM05D007595 ORTHO05D009570 6.7e-156 554.3 292 94.9
ClCG05G002930 Citrullus lanatus HOM05D007595 ORTHO05D009570 1.4e-137 493.4 289 85.1
Sed0013429 Sechium edule HOM05D007595 ORTHO05D009570 2.0e-128 463.0 293 80.5
Prupe.1G180300 Prunus persica HOM05D007595 ORTHO05D009570 3.2e-89 332.8 291 58.4
FvH4_5g25080 Fragaria vesca HOM05D007595 ORTHO05D009570 4.6e-88 328.9 271 60.5
FAN08G2497 Fragaria x ananassa HOM05D007595 ORTHO05D009570 1.3e-87 327.4 271 60.1
QL04p026468 Quercus lobata HOM05D007595 ORTHO05D009570 3.6e-85 319.3 306 53.9
CiPaw.13G022600 Carya illinoinensis HOM05D007595 ORTHO05D009570 1.4e-84 317.4 300 56.7
Cfa011030 Carpinus fangiana HOM05D007595 ORTHO05D009570 2.4e-84 316.6 271 60.5
Duzib138G0502 Durio zibethinus HOM05D007595 ORTHO05D009570 9.0e-84 314.7 313 53.4
Atru.chr5.81 Acer truncatum HOM05D007595 ORTHO05D009570 1.4e-81 307.4 318 51.3
Manes.01G274800 Manihot esculenta HOM05D007595 ORTHO05D009570 1.9e-81 307.0 304 54.3
Potri.014G052800 Populus trichocarpa HOM05D007595 ORTHO05D009570 3.2e-81 306.2 296 54.4
Sabra14G0039800 Salix brachista HOM05D007595 ORTHO05D009570 6.7e-79 298.5 268 55.6
Gohir.A12G098700 Gossypium hirsutum HOM05D007595 ORTHO05D009570 1.1e-78 297.7 249 56.6
TWI59G0156 Tripterygium wilfordii HOM05D007595 ORTHO05D009570 2.1e-77 293.5 300 52.3
VMungo0251G3282 Vigna mungo HOM05D007595 ORTHO05D009570 1.1e-76 291.2 274 51.1
CANSAT54G2206 Cannabis sativa HOM05D007595 ORTHO05D009570 1.8e-76 290.4 289 51.6
Ciclev10018805m.g Citrus clementina HOM05D007595 ORTHO05D009570 6.9e-76 288.5 296 50.7
Phvul.002G094300 Phaseolus vulgaris HOM05D007595 ORTHO05D009570 3.4e-75 286.2 257 53.7
CANSAT25G1659 Cannabis sativa HOM05D007595 ORTHO05D009570 2.9e-74 283.1 250 56.0
Glyma.07G218100 Glycine max HOM05D007595 ORTHO05D009570 2.9e-74 283.1 275 53.5
Lsat_1_v5_gn_4_38381 Lactuca sativa HOM05D007595 ORTHO05D009570 6.0e-72 275.4 262 53.1
CANSAT78G1456 Cannabis sativa HOM05D007595 ORTHO05D009570 1.5e-70 270.8 250 54.4
Lj1g0026949 Lotus japonicus HOM05D007595 ORTHO05D009570 1.1e-68 264.6 261 52.1
Lalb_Chr16g0384971 Lupinus albus HOM05D007595 ORTHO05D009570 2.0e-67 260.4 258 52.7
Sc22g0000140 Simmondsia chinensis HOM05D007595 ORTHO05D009570 2.0e-67 260.4 241 51.5
Sc22g0001280 Simmondsia chinensis HOM05D007595 ORTHO05D009570 2.0e-67 260.4 241 51.5
Psat3g072800 Pisum sativum HOM05D007595 ORTHO05D009570 3.4e-67 259.6 252 51.6
vmacro09088 Vaccinium macrocarpon HOM05D007595 ORTHO05D009570 4.5e-67 259.2 316 48.7
RcHm_v2.0_Chr7g0215291 Rosa chinensis HOM05D007595 ORTHO05D009570 1.0e-66 258.1 186 64.5
Peaxi162Scf00793g00032 Petunia axillaris HOM05D007595 ORTHO05D009570 1.3e-66 257.7 291 48.5
Hund27417 Selenicereus undatus HOM05D007595 ORTHO05D009570 2.2e-66 256.9 254 51.2
MD02G1222500 Malus domestica HOM05D007595 ORTHO05D009570 2.9e-66 256.5 184 65.2
RcHm_v2.0_Chr4g0407101 Rosa chinensis HOM05D007595 ORTHO05D009570 6.5e-66 255.4 186 64.0
Rhsim05G0178700 Rhododendron simsii HOM05D007595 ORTHO05D009570 1.1e-65 254.6 249 52.2
Sopen01g035520 Solanum pennellii HOM05D007595 ORTHO05D009570 4.2e-65 252.7 252 49.2
THA.LOC104811608 Tarenaya hassleriana HOM05D007595 ORTHO05D009570 4.2e-65 252.7 247 52.2
Cc02_g25530 Coffea canephora HOM05D007595 ORTHO05D009570 1.6e-64 250.8 205 58.0
SHI13644 Sapria himalayana HOM05D007595 ORTHO05D009570 6.0e-64 248.8 253 49.8
COL.COLO4_12359 Corchorus olitorius HOM05D007595 ORTHO05D009570 8.7e-63 245.0 184 62.5
CSS0007679 Camellia sinensis var. sinensis HOM05D007595 ORTHO05D009570 1.5e-62 244.2 184 62.5
AUR62008574 Chenopodium quinoa HOM05D007595 ORTHO05D009570 2.8e-61 240.0 184 59.8
Haze_02895 Corylus avellana HOM05D007595 ORTHO05D009570 2.8e-61 240.0 175 66.9
Migut.B01494 Erythranthe guttata HOM05D007595 ORTHO05D009570 1.1e-60 238.0 242 48.3
AUR62034666 Chenopodium quinoa HOM05D007595 ORTHO05D009570 1.4e-60 237.7 184 59.8
CDE04G2406 Ceratophyllum demersum HOM05D007595 ORTHO05D009570 9.0e-60 235.0 247 48.2
SalBow5G3719 Salvia bowleyana HOM05D007595 ORTHO05D009570 1.7e-58 230.7 260 48.5
Medtr7g091470 Medicago truncatula HOM05D007595 ORTHO05D009570 2.2e-58 230.3 252 46.8
CAN.G756.22 Capsicum annuum HOM05D007595 ORTHO05D009570 6.5e-58 228.8 238 50.0
Ah.08g212430 Amaranthus hybridus HOM05D007595 ORTHO05D009570 1.4e-57 227.6 184 57.6
MSTRG.20666 Avicennia marina HOM05D007595 ORTHO05D009570 1.9e-57 227.3 256 46.9
Actinidia05786 Actinidia chinensis HOM05D003161 ORTHO05D009570 7.9e-56 221.9 181 61.9
Lalb_Chr05g0219501 Lupinus albus HOM05D007595 ORTHO05D009570 2.3e-55 220.3 248 49.6
EL10Ac7g17423 Beta vulgaris HOM05D007595 ORTHO05D009570 3.9e-55 219.5 186 54.3
MBI04_g20744_MAGBIO Magnolia biondii HOM05D000404 ORTHO05D001765 1.1e-54 218.0 257 46.3
Ca_08452_v3 Cicer arietinum L. HOM05D007595 ORTHO05D009570 2.5e-54 216.9 181 59.1
Ca_08455_v3 Cicer arietinum L. HOM05D007595 ORTHO05D009570 2.5e-54 216.9 181 59.1
Oeu004640.1 Olea europaea HOM05D007595 ORTHO05D009570 4.3e-54 216.1 179 56.4
Nitab4.5_0000563g0010 Nicotiana tabacum HOM05D007595 ORTHO05D009570 7.4e-54 215.3 218 53.2
SGA_v2.0_scaffold34G13580 Striga asiatica HOM05D007595 ORTHO05D009570 1.7e-53 214.2 243 43.6
PGSC0003DMG400001689 Solanum tuberosum HOM05D007595 ORTHO05D009570 2.2e-53 213.8 180 56.1
PGR042G2115 Punica granatum HOM05D007595 ORTHO05D009570 4.8e-53 212.6 189 55.6
Lj9C550T12 Lonicera japonica HOM05D007595 ORTHO05D009570 2.4e-52 210.3 169 62.1
PSO675G4153 Papaver somniferum HOM05D007595 ORTHO05D009570 3.0e-47 193.4 272 40.8
PSO732G0035 Papaver somniferum HOM05D007595 ORTHO05D009570 3.9e-47 193.0 263 42.2
Dinv44032 Davidia involucrata HOM05D007595 ORTHO05D009570 1.3e-45 188.0 174 56.3
Aqoxy7G02148 Aquilegia oxysepala HOM05D007595 ORTHO05D009570 8.2e-45 185.3 232 43.1
Nitab4.5_0004273g0020 Nicotiana tabacum HOM05D007595 ORTHO05D009570 8.2e-45 185.3 159 57.2
Glyma.20G014500 Glycine max HOM05D007595 ORTHO05D009570 9.1e-44 181.8 142 57.7
Nn1g00708 Nelumbo nucifera HOM05D007595 ORTHO05D009570 2.0e-43 180.6 187 51.9
HanXRQChr14g0457401 Helianthus annuus HOM05D007595 ORTHO05D009570 7.7e-43 178.7 206 47.6
PSO732G0412 Papaver somniferum HOM05D007595 ORTHO05D009570 7.2e-41 172.2 212 44.3
Thecc.01G401700 Theobroma cacao HOM05D007595 ORTHO05D009570 4.7e-40 169.5 117 64.1
Gohir.D12G101900 Gossypium hirsutum HOM05D007595 ORTHO05D009570 2.4e-36 157.1 117 59.8
TAR629G2414 Trochodendron aralioides HOM05D007595 ORTHO05D009570 2.4e-36 157.1 128 57.8
Aa31LG1G28920 Aethionema arabicum HOM05D007595 ORTHO05D009570 3.1e-36 156.8 140 53.6
DCAR_029507 Daucus carota HOM05D007595 ORTHO05D009570 7.7e-35 152.1 148 51.4
TPR.G3705 Trifolium pratense HOM05D007595 ORTHO05D009570 1.3e-29 134.8 107 58.9
RcHm_v2.0_Chr4g0407111 Rosa chinensis HOM05D007595 ORTHO05D009570 2.4e-28 130.6 93 62.4
Rhsim07G0038800 Rhododendron simsii HOM05D007595 ORTHO05D009570 2.0e-27 127.5 150 48.7
GSVIVG01018339001 Vitis vinifera HOM05D007595 ORTHO05D009570 8.5e-26 122.1 93 58.1
Gorai.008G111100 Gossypium raimondii HOM05D007595 ORTHO05D009570 7.2e-25 119.0 91 56.0
ECA234G2641 Erigeron canadensis HOM05D007595 ORTHO05D009570 8.8e-23 112.1 116 48.3
HPP92_014879 Vanilla planifolia HOM05D007595 ORTHO05D009570 2.0e-22 110.9 176 38.6
Cc11_g12050 Coffea canephora HOM05D007595 ORTHO05D009570 1.4e-20 104.8 78 57.7
AUR62026015 Chenopodium quinoa HOM05D007595 ORTHO05D009570 1.0e-15 88.6 161 34.8
CSS0045109 Camellia sinensis var. sinensis HOM05D007545 ORTHO05D009579 1.9e-09 67.8 162 28.4
CSS0047431 Camellia sinensis var. sinensis HOM05D007545 ORTHO05D009579 1.9e-09 67.8 162 28.4
Actinidia06485 Actinidia chinensis HOM05D007545 ORTHO05D009579 3.3e-09 67.0 141 28.4
Eucgr.D00277 Eucalyptus grandis HOM05D000104 ORTHO05D009920 2.1e-08 64.3 131 28.2
LjContig00141g0003453 Lotus japonicus HOM05D007545 ORTHO05D009579 2.8e-08 63.9 202 22.8
Dinv02560 Davidia involucrata HOM05D008657 ORTHO05D010869 6.1e-08 62.8 165 25.5
ECA234G3464 Erigeron canadensis HOM05D007639 ORTHO05D009509 1.0e-07 62.0 208 25.5
Os10g0147250 Oryza sativa ssp. japonica HOM05D011046 ORTHO05D013342 2.3e-07 60.8 111 34.2
ECA233G1899 Erigeron canadensis HOM05D000630 ORTHO05D001413 5.2e-07 59.7 190 23.7
AT5G55840 Arabidopsis thaliana HOM05D007390 ORTHO05D009114 6.8e-07 59.3 157 24.2
Hma1.2p1_0856F.1_g229090 Hydrangea macrophylla HOM05D000424 ORTHO05D008586 6.8e-07 59.3 105 34.3
Aa31LG3G11740 Aethionema arabicum HOM05D007390 ORTHO05D009114 8.9e-07 58.9 160 23.8
AL8G31410 Arabidopsis lyrata HOM05D007390 ORTHO05D009114 1.2e-06 58.5 169 22.5
THA.LOC104805633 Tarenaya hassleriana HOM05D007545 ORTHO05D009579 1.5e-06 58.2 156 23.7
CSS0020082 Camellia sinensis var. sinensis HOM05D003039 ORTHO05D008410 2.0e-06 57.8 124 32.3
Gohir.D05G340000 Gossypium hirsutum HOM05D007291 ORTHO05D009038 2.0e-06 57.8 182 23.6
Nn5g26955 Nelumbo nucifera HOM05D000104 ORTHO05D009920 2.6e-06 57.4 99 29.3
CDE09G0292 Ceratophyllum demersum HOM05D007212 ORTHO05D009094 3.4e-06 57.0 184 22.8
QL08p056824 Quercus lobata HOM05D005287 ORTHO05D006893 3.4e-06 57.0 179 26.3
VMungo0251G0107 Vigna mungo HOM05D007101 ORTHO05D008632 3.4e-06 57.0 101 33.7
GSVIVG01012782001 Vitis vinifera HOM05D003039 ORTHO05D008410 3.4e-06 57.0 100 33.0
Ca_06378_v3 Cicer arietinum L. HOM05D007340 ORTHO05D008979 4.4e-06 56.6 143 24.5
Cc02_g04950 Coffea canephora HOM05D000104 ORTHO05D009920 4.4e-06 56.6 166 25.9
Eucgr.D01185 Eucalyptus grandis HOM05D007595 ORTHO05D009570 4.4e-06 56.6 54 48.1
Lj6A773T130 Lonicera japonica HOM05D007623 ORTHO05D009641 4.4e-06 56.6 191 23.0
MBI19_g08382_MAGBIO Magnolia biondii HOM05D007545 ORTHO05D009579 4.4e-06 56.6 162 27.8
COL.COLO4_21653 Corchorus olitorius HOM05D000162 ORTHO05D000090 5.8e-06 56.2 99 31.3
AT2G01740 Arabidopsis thaliana HOM05D008835 ORTHO05D011094 7.5e-06 55.8 91 33.0
CARHR144310 Cardamine hirsuta HOM05D008835 ORTHO05D011094 7.5e-06 55.8 91 30.8
AL5G10840 Arabidopsis lyrata HOM05D008835 ORTHO05D011094 9.8e-06 55.5 91 33.0
CSS0033889 Camellia sinensis var. sinensis HOM05D003039 ORTHO05D008410 9.8e-06 55.5 102 31.4
MD16G1054700 Malus domestica HOM05D007623 ORTHO05D009641 9.8e-06 55.5 194 24.2


User provided reference genes

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