Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006242.2 Cucumis melo HOM05D005239 ORTHO05D006698 1.7e-252 875.5 449 100.0
CsaV3_3G010220 Cucumis sativus L. HOM05D005239 ORTHO05D006698 7.9e-242 840.1 449 96.0
ClCG05G002730 Citrullus lanatus HOM05D005239 ORTHO05D006698 1.0e-220 770.0 451 88.5
Sed0010493 Sechium edule HOM05D005239 ORTHO05D006698 3.4e-213 745.0 450 85.3
Sed0027364 Sechium edule HOM05D005239 ORTHO05D006698 5.5e-211 737.6 450 84.2
CiPaw.13G020400 Carya illinoinensis HOM05D005239 ORTHO05D006698 2.3e-169 599.4 453 71.3
Thecc.04G216000 Theobroma cacao HOM05D005239 ORTHO05D006698 7.8e-165 584.3 452 71.2
Gorai.006G218900 Gossypium raimondii HOM05D005239 ORTHO05D006698 1.0e-164 583.9 462 69.5
Gohir.D09G195500 Gossypium hirsutum HOM05D005239 ORTHO05D006698 6.6e-164 581.3 462 69.3
RcHm_v2.0_Chr6g0273481 Rosa chinensis HOM05D005239 ORTHO05D006698 1.9e-163 579.7 452 69.2
TAR636G2805 Trochodendron aralioides HOM05D005239 ORTHO05D006698 9.5e-163 577.4 456 67.3
COL.COLO4_20862 Corchorus olitorius HOM05D005239 ORTHO05D006698 2.1e-162 576.2 455 68.6
MD08G1235300 Malus domestica HOM05D005239 ORTHO05D006698 2.1e-162 576.2 447 67.6
Duzib151G1142 Durio zibethinus HOM05D005239 ORTHO05D006698 2.8e-162 575.9 459 68.2
CSS0007844 Camellia sinensis var. sinensis HOM05D005239 ORTHO05D006698 1.4e-161 573.5 458 66.8
Gohir.A09G201600 Gossypium hirsutum HOM05D005239 ORTHO05D006698 4.0e-161 572.0 461 68.5
PGR119G0794 Punica granatum HOM05D005239 ORTHO05D006698 4.0e-161 572.0 464 66.8
FvH4_2g12720 Fragaria vesca HOM05D005239 ORTHO05D006698 5.2e-161 571.6 452 68.6
Dinv43567 Davidia involucrata HOM05D005239 ORTHO05D006698 2.0e-160 569.7 402 71.6
Eucgr.H02846 Eucalyptus grandis HOM05D005239 ORTHO05D006698 5.8e-160 568.2 470 66.0
Actinidia21601 Actinidia chinensis HOM05D005239 ORTHO05D006698 1.3e-159 567.0 451 67.0
Hma1.2p1_0601F.1_g187220 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 1.7e-159 566.6 456 65.6
FAN27G2303 Fragaria x ananassa HOM05D005239 ORTHO05D006698 2.9e-159 565.8 465 66.9
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 3.7e-159 565.5 450 68.9
FAN15G3107 Fragaria x ananassa HOM05D005239 ORTHO05D006698 4.9e-159 565.1 464 66.8
Dinv44000 Davidia involucrata HOM05D005239 ORTHO05D001060 8.3e-159 564.3 378 75.7
TWI59G0212 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 3.2e-158 562.4 464 66.4
TAR629G3002 Trochodendron aralioides HOM05D005239 ORTHO05D006698 9.2e-158 560.8 467 65.3
Prupe.1G571600 Prunus persica HOM05D005239 ORTHO05D006698 2.1e-157 559.7 450 64.7
TWI14G1099 Tripterygium wilfordii HOM05D005239 ORTHO05D006698 4.6e-157 558.5 466 67.4
Nitab4.5_0004264g0020 Nicotiana tabacum HOM05D005239 ORTHO05D006698 6.0e-157 558.1 448 65.8
QL04p024849 Quercus lobata HOM05D005239 ORTHO05D006698 1.3e-156 557.0 382 75.4
CANSAT54G1536 Cannabis sativa HOM05D005239 ORTHO05D006698 1.7e-156 556.6 455 67.5
Nn6g33642 Nelumbo nucifera HOM05D005239 ORTHO05D006698 8.6e-156 554.3 461 65.1
Sabra02G0168400 Salix brachista HOM05D005239 ORTHO05D006698 1.5e-155 553.5 457 67.2
GSVIVG01018386001 Vitis vinifera HOM05D005239 ORTHO05D006698 1.5e-155 553.5 452 65.5
Peaxi162Scf01144g00013 Petunia axillaris HOM05D005239 ORTHO05D006698 1.9e-155 553.1 447 66.0
Ciclev10020370m.g Citrus clementina HOM05D005239 ORTHO05D006698 3.3e-155 552.4 422 69.9
Potri.002G216100 Populus trichocarpa HOM05D005239 ORTHO05D006698 7.3e-155 551.2 461 67.2
vmacro21097 Vaccinium macrocarpon HOM05D005239 ORTHO05D006698 1.1e-153 547.4 457 66.3
Atru.chr9.1540 Acer truncatum HOM05D005239 ORTHO05D006698 6.8e-153 544.7 402 70.4
Sopen01g032450 Solanum pennellii HOM05D005239 ORTHO05D006698 2.6e-152 542.7 450 64.2
Solyc01g080860.3 Solanum lycopersicum HOM05D005239 ORTHO05D006698 3.4e-152 542.3 450 64.0
Manes.05G061000 Manihot esculenta HOM05D005239 ORTHO05D006698 6.4e-151 538.1 448 65.2
ECA234G1231 Erigeron canadensis HOM05D005239 ORTHO05D006698 8.4e-151 537.7 456 63.4
Ah.06g191320 Amaranthus hybridus HOM05D005239 ORTHO05D006698 1.6e-149 533.5 452 64.2
Glyma.20G243400 Glycine max HOM05D005239 ORTHO05D006698 2.7e-149 532.7 400 70.0
Rhsim01G0145300 Rhododendron simsii HOM05D005239 ORTHO05D006698 2.7e-149 532.7 490 61.2
THA.LOC104802511 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 2.7e-149 532.7 457 63.0
CAN.G1480.7 Capsicum annuum HOM05D005239 ORTHO05D006698 3.5e-149 532.3 374 70.1
arahy.Tifrunner.gnm1.ann1.X9CQTL Arachis hypogaea HOM05D005239 ORTHO05D006698 6.0e-149 531.6 383 71.0
PGSC0003DMG400001672 Solanum tuberosum HOM05D005239 ORTHO05D006698 6.0e-149 531.6 480 60.0
DCAR_029633 Daucus carota HOM05D005239 ORTHO05D006698 1.3e-148 530.4 451 63.4
HanXRQChr17g0562471 Helianthus annuus HOM05D005239 ORTHO05D006698 5.1e-148 528.5 454 62.6
Aqoxy3G02472 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 8.7e-148 527.7 463 62.9
Haze_02934 Corylus avellana HOM05D005239 ORTHO05D006698 8.7e-148 527.7 476 62.8
arahy.Tifrunner.gnm1.ann1.XN1C7B Arachis hypogaea HOM05D005239 ORTHO05D006698 1.9e-147 526.6 385 70.1
Lj5g0010357 Lotus japonicus HOM05D005239 ORTHO05D006698 7.3e-147 524.6 401 69.3
THA.LOC104817164 Tarenaya hassleriana HOM05D005239 ORTHO05D006698 7.3e-147 524.6 472 62.5
Sc20g0003020 Simmondsia chinensis HOM05D005239 ORTHO05D006698 1.2e-146 523.9 390 69.5
EL10Ac4g08842 Beta vulgaris HOM05D005239 ORTHO05D006698 1.6e-146 523.5 451 63.4
CDE04G1215 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 1.6e-146 523.5 459 62.1
AUR62041654 Chenopodium quinoa HOM05D005239 ORTHO05D006698 3.6e-146 522.3 458 62.0
VMungo0720G0476 Vigna mungo HOM05D005239 ORTHO05D006698 3.6e-146 522.3 407 68.8
Medtr1g116110 Medicago truncatula HOM05D005239 ORTHO05D006698 4.0e-145 518.8 402 66.7
Phvul.007G006700 Phaseolus vulgaris HOM05D005239 ORTHO05D006698 5.3e-145 518.5 408 68.9
Lalb_Chr02g0143811 Lupinus albus HOM05D005239 ORTHO05D006698 9.0e-145 517.7 377 70.8
Oeu002884.1 Olea europaea HOM05D005239 ORTHO05D006698 9.0e-145 517.7 530 57.2
AUR62035533 Chenopodium quinoa HOM05D005239 ORTHO05D006698 2.0e-144 516.5 451 61.9
TPR.G10426 Trifolium pratense HOM05D005239 ORTHO05D006698 4.4e-144 515.4 404 66.6
Aa31LG1G26110 Aethionema arabicum HOM05D005239 ORTHO05D006698 9.9e-144 514.2 455 61.8
Ca_11344_v3 Cicer arietinum L. HOM05D005239 ORTHO05D006698 1.3e-143 513.8 405 66.9
Cc02_g25930 Coffea canephora HOM05D005239 ORTHO05D006698 3.8e-143 512.3 451 62.1
AL4G43540 Arabidopsis lyrata HOM05D005239 ORTHO05D006698 2.4e-142 509.6 454 61.7
PSO302G0170 Papaver somniferum HOM05D005239 ORTHO05D006698 3.2e-142 509.2 408 65.9
Psat6g232360 Pisum sativum HOM05D005239 ORTHO05D006698 3.2e-142 509.2 368 71.2
Sp4g26610 Schrenkiella parvula HOM05D005239 ORTHO05D006698 3.2e-142 509.2 452 61.3
BraA04t18797Z Brassica rapa HOM05D005239 ORTHO05D006698 1.6e-141 506.9 455 60.7
PSO170G2576 Papaver somniferum HOM05D005239 ORTHO05D006698 1.0e-140 504.2 415 65.1
Thhalv10001456m.g Eutrema salsugineum HOM05D005239 ORTHO05D006698 1.3e-140 503.8 453 60.3
BcaC02g07098 Brassica carinata HOM05D005239 ORTHO05D006698 2.3e-140 503.1 455 59.8
BolC4t28610H Brassica oleracea HOM05D005239 ORTHO05D006698 3.0e-140 502.7 455 60.2
Carub.0004s2708 Capsella rubella HOM05D005239 ORTHO05D006698 3.9e-140 502.3 454 60.1
BcaB06g29384 Brassica carinata HOM05D005239 ORTHO05D006698 1.1e-139 500.7 455 59.8
Lj9A547G68 Lonicera japonica HOM05D005239 ORTHO05D006698 1.1e-139 500.7 341 72.4
HPP92_001886 Vanilla planifolia HOM05D005239 ORTHO05D006698 9.6e-139 497.7 369 69.6
AT2G44520 Arabidopsis thaliana HOM05D005239 ORTHO05D006698 1.3e-138 497.3 456 60.5
SGA_v2.0_scaffold69G23296 Striga asiatica HOM05D005239 ORTHO05D006698 2.8e-138 496.1 448 61.6
ATR1153G024 Amborella trichopoda HOM05D005239 ORTHO05D006698 3.1e-137 492.7 422 61.6
SGA_v2.0_scaffold52G19274 Striga asiatica HOM05D005239 ORTHO05D006698 3.4e-136 489.2 448 60.5
Os01g0527700 Oryza sativa ssp. japonica HOM05D005239 ORTHO05D006698 4.9e-135 485.3 356 69.1
C04p05410 Brassica napus HOM05D005239 ORTHO05D006698 2.1e-133 479.9 361 68.4
BolC4t22181H Brassica oleracea HOM05D005239 ORTHO05D006698 2.1e-133 479.9 361 68.4
Zm00001eb402310 Zea mays HOM05D005239 ORTHO05D006698 2.1e-133 479.9 356 69.9
unitig_26.g9718 Utricularia gibba HOM05D005239 ORTHO05D006698 1.8e-132 476.9 432 59.0
Lsat_1_v5_gn_4_39040 Lactuca sativa HOM05D005239 ORTHO05D006698 5.6e-131 471.9 453 59.6
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 4.8e-130 468.8 335 70.4
BcaNung07053 Brassica carinata HOM05D005239 ORTHO05D006698 6.2e-130 468.4 455 57.4
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 2.4e-129 466.5 330 70.3
Nitab4.5_0001476g0120 Nicotiana tabacum HOM05D005239 ORTHO05D006698 9.0e-129 464.5 448 58.3
Duzib212G0896 Durio zibethinus HOM05D005239 ORTHO05D006698 4.5e-128 462.2 459 59.3
BcaC02g12301 Brassica carinata HOM05D005239 ORTHO05D006698 1.9e-126 456.8 340 68.2
Zm00001eb005400 Zea mays HOM05D005239 ORTHO05D006698 6.7e-124 448.4 334 69.2
MD15G1426600 Malus domestica HOM05D005239 ORTHO05D006698 1.5e-123 447.2 303 72.9
AagrBONN_evm.TU.Sc2ySwM_369.187 Anthoceros agrestis HOM05D005239 ORTHO05D006698 2.6e-112 409.8 391 56.3
Actinidia33289 Actinidia chinensis HOM05D005239 ORTHO05D006698 8.5e-111 404.8 327 66.4
SEGI_24425 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 5.5e-110 402.1 292 67.1
Cpa.g.sc20.28 Carica papaya HOM05D005239 ORTHO05D006698 1.2e-109 401.0 347 63.1
Migut.B01467 Erythranthe guttata HOM05D005239 ORTHO05D006698 1.5e-107 394.0 326 64.1
SMO364G0841 Selaginella moellendorffii HOM05D005239 ORTHO05D006698 2.0e-104 383.6 345 55.7
Hma1.2p1_0601F.1_g187230 Hydrangea macrophylla HOM05D005239 ORTHO05D006698 5.5e-102 375.6 295 67.8
Mapoly0029s0153 Marchantia polymorpha HOM05D005239 ORTHO05D006698 2.7e-101 373.2 361 53.5
CDE12G0888 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 2.3e-92 343.6 246 71.1
CARHR139710 Cardamine hirsuta HOM05D005239 ORTHO05D006698 1.1e-91 341.3 241 70.5
CBR_g3821 Chara braunii HOM05D005239 ORTHO05D006698 5.3e-89 332.4 291 57.7
CAN.G74.42 Capsicum annuum HOM05D005239 ORTHO05D006698 1.3e-87 327.8 302 57.6
PSO357G0304 Papaver somniferum HOM05D005239 ORTHO05D006698 2.5e-86 323.6 204 79.4
Pp3c14_19200 Physcomitrium patens HOM05D005239 ORTHO05D006698 2.5e-86 323.6 260 61.9
Oeu037395.1 Olea europaea HOM05D005239 ORTHO05D006698 1.3e-74 284.6 349 51.3
Cre12.g516350 Chlamydomonas reinhardtii HOM05D005239 ORTHO05D006698 6.6e-71 272.3 303 49.2
BraA05t19443Z Brassica rapa HOM05D005239 ORTHO05D006698 1.0e-68 265.0 292 51.7
MD15G1426900 Malus domestica HOM05D005239 ORTHO05D006698 5.2e-68 262.7 187 67.9
A05p04670 Brassica napus HOM05D005239 ORTHO05D006698 1.2e-67 261.5 284 53.2
MCO03G363 Micromonas commoda HOM05D005239 ORTHO05D006698 2.0e-67 260.8 281 49.1
PRCOL_00000009 Prasinoderma coloniale HOM05D005239 ORTHO05D006698 4.4e-67 259.6 340 42.4
Aqoxy5G02001 Aquilegia oxysepala HOM05D005239 ORTHO05D006698 1.8e-65 254.2 197 65.5
BcaB02g08828 Brassica carinata HOM05D005239 ORTHO05D006698 1.0e-55 221.9 237 52.7
FAN24G3432 Fragaria x ananassa HOM05D005239 ORTHO05D006698 4.9e-50 203.0 207 60.4
SHI13675 Sapria himalayana HOM05D005239 ORTHO05D006698 2.4e-49 200.7 196 58.2
Cfa027222 Carpinus fangiana HOM05D005239 ORTHO05D006698 2.1e-37 161.0 368 34.5
PGR004G1759 Punica granatum HOM05D005239 ORTHO05D006698 1.2e-32 145.2 121 66.1
PSO081G0040 Papaver somniferum HOM05D005239 ORTHO05D006698 1.6e-29 134.8 84 81.0
TPR.G37315 Trifolium pratense HOM05D005239 ORTHO05D006698 1.8e-28 131.3 83 72.3
Glyma.10G293300 Glycine max HOM05D005239 ORTHO05D006698 5.3e-28 129.8 76 78.9
RcHm_v2.0_Chr6g0271171 Rosa chinensis HOM05D005239 ORTHO05D006698 1.0e-23 115.5 71 81.7
RcHm_v2.0_Chr7g0200821 Rosa chinensis HOM05D005239 ORTHO05D006698 1.6e-21 108.2 71 77.5
CDE12G0056 Ceratophyllum demersum HOM05D005239 ORTHO05D006698 6.2e-21 106.3 86 66.3
Cc02_g25970 Coffea canephora HOM05D005239 ORTHO05D006698 4.3e-14 83.6 98 48.0
SEGI_27712 Sequoiadendron giganteum HOM05D005239 ORTHO05D006698 7.4e-14 82.8 57 70.2
SHI13676 Sapria himalayana HOM05D005239 ORTHO05D006698 2.6e-11 74.3 85 55.3


User provided reference genes

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