Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006226.2 Cucumis melo HOM05D004773 ORTHO05D005943 1.6e-216 755.7 379 100.0
CsaV3_3G010040 Cucumis sativus L. HOM05D004773 ORTHO05D005943 1.7e-173 612.8 315 97.5
ClCG05G002600 Citrullus lanatus HOM05D004773 ORTHO05D005943 7.5e-161 570.9 371 80.6
Sed0007971 Sechium edule HOM05D004773 ORTHO05D005943 1.3e-157 560.1 315 87.9
Ciclev10032178m.g Citrus clementina HOM05D004773 ORTHO05D005943 2.1e-126 456.4 304 72.7
QL09p005927 Quercus lobata HOM05D004773 ORTHO05D005943 6.7e-125 451.4 303 72.3
Cfa016123 Carpinus fangiana HOM05D004773 ORTHO05D005943 1.1e-122 444.1 304 71.4
MD15G1141100 Malus domestica HOM05D004773 ORTHO05D005943 1.4e-122 443.7 301 71.8
Haze_00339 Corylus avellana HOM05D004773 ORTHO05D005943 4.0e-122 442.2 304 71.1
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 3.4e-121 439.1 303 71.0
CiPaw.05G210200 Carya illinoinensis HOM05D004773 ORTHO05D005943 5.8e-121 438.3 305 69.8
Lj1P1212T41 Lonicera japonica HOM05D004773 ORTHO05D005943 1.9e-119 433.3 304 69.1
Lj2g0008141 Lotus japonicus HOM05D004773 ORTHO05D005943 1.9e-119 433.3 305 69.5
Atru.chr2.1725 Acer truncatum HOM05D004773 ORTHO05D005943 7.1e-119 431.4 305 68.5
Psat1g096800 Pisum sativum HOM05D004773 ORTHO05D005943 7.9e-118 427.9 303 70.3
Manes.08G158200 Manihot esculenta HOM05D004773 ORTHO05D005943 1.3e-117 427.2 309 67.6
Thecc.05G229300 Theobroma cacao HOM05D004773 ORTHO05D005943 1.3e-117 427.2 307 67.8
Duzib128G1941 Durio zibethinus HOM05D004773 ORTHO05D005943 1.8e-117 426.8 305 68.2
Prupe.7G272000 Prunus persica HOM05D004773 ORTHO05D005943 3.0e-117 426.0 302 69.5
Lalb_Chr06g0173871 Lupinus albus HOM05D004773 ORTHO05D005943 3.9e-117 425.6 303 69.0
Medtr6g033025 Medicago truncatula HOM05D004773 ORTHO05D005943 3.9e-117 425.6 305 67.9
AL6G28660 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 8.7e-117 424.5 303 68.0
Sp6g26650 Schrenkiella parvula HOM05D004773 ORTHO05D005943 8.7e-117 424.5 305 69.8
BcaB08g36761 Brassica carinata HOM05D004773 ORTHO05D005943 1.1e-116 424.1 305 69.5
Gohir.D11G235500 Gossypium hirsutum HOM05D004773 ORTHO05D005943 1.1e-116 424.1 303 67.0
Gorai.007G248200 Gossypium raimondii HOM05D004773 ORTHO05D005943 1.5e-116 423.7 303 67.0
Carub.0006s1581 Capsella rubella HOM05D004773 ORTHO05D005943 2.5e-116 422.9 303 68.0
arahy.Tifrunner.gnm1.ann1.WJU3K5 Arachis hypogaea HOM05D004773 ORTHO05D005943 3.3e-116 422.5 307 67.4
Ca_04503_v3 Cicer arietinum L. HOM05D004773 ORTHO05D005943 3.3e-116 422.5 305 68.9
Actinidia11804 Actinidia chinensis HOM05D004773 ORTHO05D005943 5.6e-116 421.8 304 67.8
Thhalv10014121m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 5.6e-116 421.8 303 69.3
AUR62014736 Chenopodium quinoa HOM05D004773 ORTHO05D005943 9.6e-116 421.0 307 66.8
A10p21830 Brassica napus HOM05D004773 ORTHO05D008759 1.3e-115 420.6 311 67.2
C09p59580 Brassica napus HOM05D004773 ORTHO05D005943 1.6e-115 420.2 306 68.3
TWI32G1059 Tripterygium wilfordii HOM05D004773 ORTHO05D005943 2.8e-115 419.5 309 67.6
BolC9t58797H Brassica oleracea HOM05D004773 ORTHO05D005943 3.7e-115 419.1 306 68.0
BcaC04g18778 Brassica carinata HOM05D004773 ORTHO05D005943 1.1e-114 417.5 303 68.3
AUR62016916 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.1e-114 417.5 303 67.0
TAR317G0002 Trochodendron aralioides HOM05D004773 ORTHO05D005943 2.4e-114 416.4 312 65.4
vmacro15870 Vaccinium macrocarpon HOM05D004773 ORTHO05D005943 3.1e-114 416.0 304 67.8
AT5G17570 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 4.0e-114 415.6 303 67.0
MBI04_g12483_MAGBIO Magnolia biondii HOM05D004773 ORTHO05D005943 5.3e-114 415.2 309 65.4
Rhsim02G0120400 Rhododendron simsii HOM05D000873 ORTHO05D002948 7.6e-113 411.4 304 68.1
Hund21271 Selenicereus undatus HOM05D004773 ORTHO05D005943 1.3e-112 410.6 306 65.7
THA.LOC104802901 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 1.7e-112 410.2 303 66.0
Cc02_g12570 Coffea canephora HOM05D004773 ORTHO05D005943 2.9e-112 409.5 303 64.7
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 2.9e-112 409.5 307 64.5
ECA234G3816 Erigeron canadensis HOM05D004773 ORTHO05D005943 1.4e-111 407.1 304 66.4
Nn2g15176 Nelumbo nucifera HOM05D004773 ORTHO05D005943 1.9e-111 406.8 305 65.2
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 4.2e-111 405.6 296 67.6
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 9.3e-111 404.4 303 67.0
DCAR_024890 Daucus carota HOM05D004773 ORTHO05D005943 1.6e-110 403.7 306 63.4
HanXRQChr17g0555701 Helianthus annuus HOM05D004773 ORTHO05D005943 6.0e-110 401.7 308 63.6
Aqoxy5G04203 Aquilegia oxysepala HOM05D004773 ORTHO05D005943 7.9e-110 401.4 305 64.3
CDE07G0301 Ceratophyllum demersum HOM05D004773 ORTHO05D005943 3.0e-109 399.4 303 64.7
Nitab4.5_0003676g0020 Nicotiana tabacum HOM05D004773 ORTHO05D005943 3.3e-108 396.0 308 63.0
Nitab4.5_0005399g0010 Nicotiana tabacum HOM05D004773 ORTHO05D005943 1.6e-107 393.7 304 62.8
Peaxi162Scf00527g00065 Petunia axillaris HOM05D004773 ORTHO05D005943 8.2e-107 391.3 307 61.9
GSVIVG01019376001 Vitis vinifera HOM05D004773 ORTHO05D005943 1.1e-106 391.0 289 66.1
Hma1.2p1_0144F.1_g064840 Hydrangea macrophylla HOM05D004773 ORTHO05D005943 3.1e-106 389.4 304 63.2
CAN.G1181.18 Capsicum annuum HOM05D004773 ORTHO05D005943 5.3e-106 388.7 304 61.8
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 1.5e-105 387.1 304 62.2
Solyc02g078980.3 Solanum lycopersicum HOM05D004773 ORTHO05D005943 2.0e-105 386.7 304 62.5
Glyma.16G151100 Glycine max HOM05D004773 ORTHO05D005943 2.6e-105 386.3 274 69.7
Sopen02g023790 Solanum pennellii HOM05D004773 ORTHO05D005943 5.9e-105 385.2 306 62.7
Aa31LG11G12090 Aethionema arabicum HOM05D004773 ORTHO05D005943 7.6e-105 384.8 303 64.4
SalBow8G5056 Salvia bowleyana HOM05D004773 ORTHO05D005943 1.0e-104 384.4 304 61.8
Eucgr.F01970 Eucalyptus grandis HOM05D004773 ORTHO05D005943 1.3e-104 384.0 305 62.0
PGSC0003DMG400022363 Solanum tuberosum HOM05D004773 ORTHO05D005943 3.8e-104 382.5 304 61.5
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 5.0e-104 382.1 304 60.5
Phvul.004G078000 Phaseolus vulgaris HOM05D004773 ORTHO05D005943 6.5e-104 381.7 272 69.1
Lsat_1_v5_gn_4_57340 Lactuca sativa HOM05D004773 ORTHO05D005943 1.4e-103 380.6 305 61.0
CANSAT01G2664 Cannabis sativa HOM05D004773 ORTHO05D005943 2.5e-103 379.8 304 63.5
ATR0620G003 Amborella trichopoda HOM05D004773 ORTHO05D005943 4.6e-102 375.6 305 60.0
Os04g0577500 Oryza sativa ssp. japonica HOM05D004773 ORTHO05D005943 4.6e-102 375.6 309 61.2
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.0e-101 374.4 305 63.9
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 3.0e-101 372.9 303 59.7
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.0e-101 372.9 305 63.6
PGR102G2546 Punica granatum HOM05D004773 ORTHO05D005943 3.0e-101 372.9 301 61.5
HanXRQChr12g0364651 Helianthus annuus HOM05D004773 ORTHO05D005943 1.1e-100 370.9 328 57.0
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.5e-100 370.5 305 63.9
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 2.5e-100 369.8 305 63.3
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.3e-100 369.4 304 63.5
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.3e-100 369.4 304 63.5
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 7.4e-100 368.2 309 59.5
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 9.7e-100 367.9 302 64.9
HPP92_001439 Vanilla planifolia HOM05D004773 ORTHO05D005943 9.7e-100 367.9 306 61.4
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.3e-99 367.5 302 64.9
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.8e-99 366.3 302 64.2
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.8e-99 366.3 302 64.2
ECA234G0571 Erigeron canadensis HOM05D000140 ORTHO05D000087 1.1e-98 364.4 303 60.1
Eucgr.F01964 Eucalyptus grandis HOM05D004773 ORTHO05D005943 2.4e-98 363.2 307 59.9
PSO063G3794 Papaver somniferum HOM05D004773 ORTHO05D005943 4.1e-98 362.5 307 59.6
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 5.3e-98 362.1 306 60.5
arahy.Tifrunner.gnm1.ann1.KNV4WG Arachis hypogaea HOM05D004773 ORTHO05D005943 2.0e-97 360.1 307 59.6
Cc02_g14730 Coffea canephora HOM05D004773 ORTHO05D005943 1.7e-96 357.1 307 55.7
CARHR195610 Cardamine hirsuta HOM05D004773 ORTHO05D005943 2.9e-96 356.3 264 67.0
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.8e-96 355.9 304 62.5
Gohir.A11G222000 Gossypium hirsutum HOM05D004773 ORTHO05D005943 4.7e-94 349.0 239 67.4
THA.LOC104802900 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 1.0e-93 347.8 306 56.9
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 1.8e-93 347.1 303 55.8
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 1.1e-92 344.4 311 55.0
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 2.8e-91 339.7 306 54.6
TPR.G6097 Trifolium pratense HOM05D004773 ORTHO05D005943 1.7e-88 330.5 309 58.3
AUR62012595 Chenopodium quinoa HOM05D004773 ORTHO05D005943 6.5e-88 328.6 238 64.3
AL3G12620 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 8.5e-88 328.2 303 54.1
Gohir.D13G163600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 5.5e-87 325.5 306 52.9
AUR62014585 Chenopodium quinoa HOM05D004773 ORTHO05D005943 7.2e-87 325.1 303 56.4
Gohir.A13G158600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 7.2e-87 325.1 306 52.6
Aa31LG5G14030 Aethionema arabicum HOM05D004773 ORTHO05D005943 2.1e-86 323.6 303 52.5
Carub.0003s0264 Capsella rubella HOM05D004773 ORTHO05D005943 2.1e-86 323.6 303 52.8
Dinv40507 Davidia involucrata HOM05D004773 ORTHO05D005943 3.3e-84 316.2 304 58.2
A06p26410 Brassica napus HOM05D004773 ORTHO05D005943 4.4e-84 315.8 303 51.5
BNapus_Darmor_BZH_scaffold_78p00160 Brassica napus HOM05D004773 ORTHO05D005943 4.4e-84 315.8 303 51.5
SMO367G0365 Selaginella moellendorffii HOM05D004773 ORTHO05D005943 5.7e-84 315.5 306 52.0
Gorai.013G199600 Gossypium raimondii HOM05D004773 ORTHO05D005943 3.7e-83 312.8 306 51.6
SHI39094 Sapria himalayana HOM05D004773 ORTHO05D005943 6.3e-83 312.0 347 47.0
Pp3c12_11300 Physcomitrium patens HOM05D004773 ORTHO05D005943 8.2e-83 311.6 308 49.4
BNapus_Darmor_BZH_scaffold_162p00180 Brassica napus HOM05D004773 ORTHO05D005943 1.1e-82 311.2 304 51.3
BolC1t05828H Brassica oleracea HOM05D004773 ORTHO05D005943 1.1e-82 311.2 304 51.3
FAN02G4326 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.1e-82 311.2 208 74.0
BraA01t04577Z Brassica rapa HOM05D004773 ORTHO05D005943 1.4e-82 310.8 305 51.1
PSO063G1994 Papaver somniferum HOM05D004773 ORTHO05D005943 4.5e-81 305.8 303 49.8
Mapoly0004s0110 Marchantia polymorpha HOM05D004773 ORTHO05D005943 1.1e-79 301.2 312 50.0
AagrBONN_evm.TU.Sc2ySwM_362.2127 Anthoceros agrestis HOM05D004773 ORTHO05D005943 6.7e-77 292.0 301 49.5
BcaC09g47749 Brassica carinata HOM05D004773 ORTHO05D005943 1.2e-76 291.2 320 46.2
CBR_g32162 Chara braunii HOM05D004773 ORTHO05D001111 2.7e-73 280.0 308 50.0
PSO782G1422 Papaver somniferum HOM05D004773 ORTHO05D005943 1.5e-71 274.2 188 66.5
AT3G03500 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 2.3e-69 266.9 196 61.7
AUR62014597 Chenopodium quinoa HOM05D004773 ORTHO05D005943 8.3e-67 258.5 213 59.2
Thhalv10021316m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 3.8e-64 249.6 254 49.2
unitig_37.g12340 Utricularia gibba HOM05D004773 ORTHO05D005943 7.3e-55 218.8 149 63.1
COL.COLO4_31150 Corchorus olitorius HOM05D004773 ORTHO05D005943 2.6e-52 210.3 144 63.9
VMungo0464G1467 Vigna mungo HOM05D004773 ORTHO05D005943 3.7e-51 206.5 170 55.3
VMungo0464G0773 Vigna mungo HOM05D004773 ORTHO05D005943 4.9e-51 206.1 159 70.4
Sp3g02490 Schrenkiella parvula HOM05D004773 ORTHO05D005943 1.3e-48 198.0 343 36.7
COL.COLO4_31152 Corchorus olitorius HOM05D007715 ORTHO05D009760 3.9e-48 196.4 208 53.8
RcHm_v2.0_Chr3g0466941 Rosa chinensis HOM05D004773 ORTHO05D005943 1.9e-39 167.5 160 60.0
CAN.G1247.2 Capsicum annuum HOM05D004773 ORTHO05D005943 2.6e-36 157.1 224 39.7
HPP92_010162 Vanilla planifolia HOM05D004773 ORTHO05D005943 6.6e-24 115.9 77 61.0
PRCOL_00005876 Prasinoderma coloniale HOM05D004773 ORTHO05D005943 4.3e-23 113.2 261 33.3
SEGI_00738 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 1.1e-21 108.6 139 45.3
Cre17.g717200 Chlamydomonas reinhardtii HOM05D004773 ORTHO05D005943 2.4e-21 107.5 273 30.4
MCO10G115 Micromonas commoda HOM05D004773 ORTHO05D005943 6.9e-21 105.9 230 30.0
Glyma.16G150900 Glycine max HOM05D004773 ORTHO05D005943 1.6e-17 94.7 92 59.8
Cre03.g169800 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D005943 1.7e-16 91.3 267 27.3
AL6G10940 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.5e-15 88.2 71 56.3
TPR.G35071 Trifolium pratense HOM05D004773 ORTHO05D005943 3.6e-14 83.6 52 69.2
PGSC0003DMG400004239 Solanum tuberosum HOM05D004773 ORTHO05D005943 4.0e-13 80.1 51 64.7
Nn2g15177 Nelumbo nucifera HOM05D004773 ORTHO05D005943 9.0e-13 79.0 99 50.5
AUR62014598 Chenopodium quinoa HOM05D004773 ORTHO05D005943 2.6e-12 77.4 85 51.8
Haze_27322 Corylus avellana HOM05D005131 ORTHO05D006645 5.8e-12 76.3 292 24.3
AL3G13200 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 7.1e-10 69.3 50 58.0
Cre02.g085650 Chlamydomonas reinhardtii HOM05D005131 ORTHO05D006645 3.5e-09 67.0 257 27.6
SEGI_31644 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 1.5e-07 61.6 53 52.8
MCO14G398 Micromonas commoda HOM05D005131 ORTHO05D006645 7.4e-07 59.3 214 27.1


User provided reference genes

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