Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006215.2 Cucumis melo HOM05D004910 ORTHO05D006864 0.0e+00 4132.0 2150 100.0
CsaV3_3G009930 Cucumis sativus L. HOM05D004910 ORTHO05D006864 0.0e+00 3949.1 2150 96.1
Sed0008127 Sechium edule HOM05D004910 ORTHO05D006864 0.0e+00 3525.7 2162 85.2
ClCG05G002500 Citrullus lanatus HOM05D004910 ORTHO05D006864 0.0e+00 3524.9 2077 88.8
Cfa003693 Carpinus fangiana HOM05D004910 ORTHO05D006864 0.0e+00 2543.5 2169 63.5
Potri.013G071800 Populus trichocarpa HOM05D004910 ORTHO05D006864 0.0e+00 2458.7 2181 61.5
Thecc.05G234000 Theobroma cacao HOM05D004910 ORTHO05D006864 0.0e+00 2450.6 2180 62.3
CiPaw.02G046700 Carya illinoinensis HOM05D004910 ORTHO05D006864 0.0e+00 2435.2 2175 61.6
Prupe.2G105000 Prunus persica HOM05D004910 ORTHO05D006864 0.0e+00 2422.1 2169 61.4
MD07G1080500 Malus domestica HOM05D004910 ORTHO05D006864 0.0e+00 2417.5 2179 61.8
CANSAT25G1237 Cannabis sativa HOM05D004910 ORTHO05D006864 0.0e+00 2393.6 2170 61.0
RcHm_v2.0_Chr1g0342311 Rosa chinensis HOM05D004910 ORTHO05D006864 0.0e+00 2390.9 2171 60.8
Manes.08G157000 Manihot esculenta HOM05D004910 ORTHO05D006864 0.0e+00 2385.5 2178 60.3
Duzib177G0285 Durio zibethinus HOM05D004910 ORTHO05D006864 0.0e+00 2378.6 2176 61.0
FAN10G3403 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 2363.2 2171 60.1
FAN03G0816 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 2352.4 2193 59.6
TAR629G2465 Trochodendron aralioides HOM05D004910 ORTHO05D006864 0.0e+00 2352.0 2207 59.9
TWI34G0933 Tripterygium wilfordii HOM05D004910 ORTHO05D006864 0.0e+00 2351.2 2196 59.3
FvH4_7g07740 Fragaria vesca HOM05D004910 ORTHO05D006864 0.0e+00 2347.8 2175 60.1
FAN06G0636 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 2334.7 2195 59.5
Glyma.03G099800 Glycine max HOM05D004910 ORTHO05D006864 0.0e+00 2325.4 2171 58.5
Gorai.007G249800 Gossypium raimondii HOM05D004910 ORTHO05D006864 0.0e+00 2323.5 2189 59.7
FAN01G0980 Fragaria x ananassa HOM05D004910 ORTHO05D006864 0.0e+00 2317.7 2268 57.8
Phvul.010G039700 Phaseolus vulgaris HOM05D004910 ORTHO05D006864 0.0e+00 2304.6 2174 58.3
Dinv43524 Davidia involucrata HOM05D004910 ORTHO05D006864 0.0e+00 2301.9 2175 59.5
TPR.G17367 Trifolium pratense HOM05D004910 ORTHO05D006864 0.0e+00 2293.1 2174 58.3
Glyma.07G122900 Glycine max HOM05D004910 ORTHO05D006864 0.0e+00 2287.3 2173 58.2
GSVIVG01019298001 Vitis vinifera HOM05D004910 ORTHO05D006864 0.0e+00 2283.4 2203 58.3
Ca_25886_v3 Cicer arietinum L. HOM05D004910 ORTHO05D006864 0.0e+00 2262.6 2173 57.8
Lj3g0022995 Lotus japonicus HOM05D004910 ORTHO05D006864 0.0e+00 2262.6 2172 57.6
Medtr8g009780 Medicago truncatula HOM05D004910 ORTHO05D006864 0.0e+00 2251.9 2178 57.6
Lalb_Chr07g0194851 Lupinus albus HOM05D004910 ORTHO05D006864 0.0e+00 2240.3 2173 57.0
Ciclev10030475m.g Citrus clementina HOM05D004910 ORTHO05D006864 0.0e+00 2210.6 2175 57.1
Eucgr.D01069 Eucalyptus grandis HOM05D004910 ORTHO05D006864 0.0e+00 2192.9 2180 57.1
Haze_15792 Corylus avellana HOM05D004910 ORTHO05D006864 0.0e+00 2134.8 1951 60.3
Cc08_g05600 Coffea canephora HOM05D004910 ORTHO05D006864 0.0e+00 2117.4 2177 53.7
PSO782G5450 Papaver somniferum HOM05D004910 ORTHO05D006864 0.0e+00 2114.3 2185 54.9
DCAR_029567 Daucus carota HOM05D004910 ORTHO05D006864 0.0e+00 2114.0 2214 53.9
arahy.Tifrunner.gnm1.ann1.7UUD9R Arachis hypogaea HOM05D004910 ORTHO05D006864 0.0e+00 2111.3 2093 55.8
Nitab4.5_0006461g0010 Nicotiana tabacum HOM05D004910 ORTHO05D006864 0.0e+00 2105.9 2166 54.7
Aqoxy3G02002 Aquilegia oxysepala HOM05D004910 ORTHO05D006864 0.0e+00 2100.9 2205 55.6
Nitab4.5_0000792g0070 Nicotiana tabacum HOM05D004910 ORTHO05D006864 0.0e+00 2097.8 2176 54.5
MBI04_g30775_MAGBIO Magnolia biondii HOM05D004910 ORTHO05D006864 0.0e+00 2067.7 2245 54.4
SalBow4G1969 Salvia bowleyana HOM05D004910 ORTHO05D006864 0.0e+00 2063.9 2195 53.9
Rhsim07G0047300 Rhododendron simsii HOM05D004910 ORTHO05D006864 0.0e+00 2058.9 2022 55.9
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 0.0e+00 2058.5 2167 55.0
CAN.G992.20 Capsicum annuum HOM05D004910 ORTHO05D006864 0.0e+00 2049.6 2172 53.3
Sopen01g032990 Solanum pennellii HOM05D004910 ORTHO05D006864 0.0e+00 2031.1 2174 53.6
VMungo0331G1962 Vigna mungo HOM05D004910 ORTHO05D006864 0.0e+00 2026.1 2054 55.6
Lsat_1_v5_gn_4_42261 Lactuca sativa HOM05D004910 ORTHO05D006864 0.0e+00 1998.8 2165 52.6
THA.LOC104805731 Tarenaya hassleriana HOM05D004910 ORTHO05D006864 0.0e+00 1993.0 2174 53.6
ECA234G3354 Erigeron canadensis HOM05D004910 ORTHO05D006864 0.0e+00 1972.6 2157 53.4
EL10Ac1g00665 Beta vulgaris HOM05D004910 ORTHO05D006864 0.0e+00 1933.7 2283 49.8
Migut.N01670 Erythranthe guttata HOM05D004910 ORTHO05D006864 0.0e+00 1927.9 2182 51.2
HanXRQChr15g0492621 Helianthus annuus HOM05D004910 ORTHO05D006864 0.0e+00 1910.2 2160 51.4
Gohir.D11G236600 Gossypium hirsutum HOM05D004910 ORTHO05D006864 0.0e+00 1890.5 1891 57.5
vmacro13594 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 0.0e+00 1878.6 2131 50.6
Gohir.A11G225700 Gossypium hirsutum HOM05D004910 ORTHO05D006864 0.0e+00 1878.2 1887 57.2
ATR0829G021 Amborella trichopoda HOM05D004910 ORTHO05D006864 0.0e+00 1838.5 2195 50.6
CSS0017393 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 0.0e+00 1838.2 1900 55.4
QL04p053216 Quercus lobata HOM05D004910 ORTHO05D006864 0.0e+00 1826.6 1675 60.2
Aa31LG9G17970 Aethionema arabicum HOM05D004910 ORTHO05D006864 0.0e+00 1815.8 2251 49.2
AL7G44770 Arabidopsis lyrata HOM05D004910 ORTHO05D006864 0.0e+00 1811.2 2178 50.9
Ah.05g177140 Amaranthus hybridus HOM05D004910 ORTHO05D006864 0.0e+00 1785.4 2133 50.1
SGA_v2.0_scaffold4G02226 Striga asiatica HOM05D004910 ORTHO05D006864 0.0e+00 1767.3 2022 51.5
Hund26917 Selenicereus undatus HOM05D004910 ORTHO05D006864 0.0e+00 1755.0 2094 49.4
Peaxi162Scf00907g00121 Petunia axillaris HOM05D004910 ORTHO05D006864 0.0e+00 1700.6 1992 50.6
Solyc01g081430.4 Solanum lycopersicum HOM05D004910 ORTHO05D006864 0.0e+00 1693.7 1967 50.9
Lj9A617T56 Lonicera japonica HOM05D004910 ORTHO05D006864 0.0e+00 1674.4 1856 51.7
PGR083G1400 Punica granatum HOM05D004910 ORTHO05D006864 0.0e+00 1604.0 1539 56.1
Zm00001eb025470 Zea mays HOM05D004910 ORTHO05D006864 0.0e+00 1545.8 1980 45.3
AUR62038026 Chenopodium quinoa HOM05D004910 ORTHO05D006864 0.0e+00 1505.7 1744 52.1
Oeu002050.1 Olea europaea HOM05D004910 ORTHO05D006864 0.0e+00 1403.7 1666 50.4
AUR62014509 Chenopodium quinoa HOM05D004910 ORTHO05D006864 0.0e+00 1384.8 1701 50.4
Sc26g0002020 Simmondsia chinensis HOM05D004910 ORTHO05D006864 0.0e+00 1383.2 1695 50.0
CARHR216720 Cardamine hirsuta HOM05D004910 ORTHO05D006864 0.0e+00 1361.7 1705 49.7
Mapoly0032s0018 Marchantia polymorpha HOM05D004910 ORTHO05D006864 0.0e+00 1358.2 2290 40.0
CDE12G0362 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 0.0e+00 1351.3 1805 44.1
arahy.Tifrunner.gnm1.ann1.X9S6DI Arachis hypogaea HOM05D004910 ORTHO05D006864 0.0e+00 1340.5 1569 50.9
Atru.chr2.1651 Acer truncatum HOM05D004910 ORTHO05D006864 0.0e+00 1327.0 1111 62.6
Pp3c7_26820 Physcomitrium patens HOM05D004910 ORTHO05D006864 0.0e+00 1229.5 2262 38.0
AagrBONN_evm.TU.Sc2ySwM_362.1947 Anthoceros agrestis HOM05D004910 ORTHO05D006864 0.0e+00 1188.3 1956 38.4
Atru.chr2.1650 Acer truncatum HOM05D004910 ORTHO05D006864 3.2e-309 1066.2 1025 59.5
Psat4g216280 Pisum sativum HOM05D004910 ORTHO05D006864 4.4e-306 1055.8 1295 47.3
arahy.Tifrunner.gnm1.ann1.L1X5S4 Arachis hypogaea HOM05D004910 ORTHO05D006864 4.4e-298 1029.2 1146 52.8
PSO063G2935 Papaver somniferum HOM05D004910 ORTHO05D006864 2.2e-289 1000.3 951 56.8
Cpa.g.sc73.58 Carica papaya HOM05D004910 ORTHO05D006864 3.7e-289 999.6 1009 55.0
PSO063G6831 Papaver somniferum HOM05D004910 ORTHO05D006864 1.1e-285 988.0 1126 53.3
SEGI_03249 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 2.0e-258 897.5 1381 40.4
Os04g0218600 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 3.9e-254 883.2 965 51.1
CBR_g49462 Chara braunii HOM05D004910 ORTHO05D006864 2.2e-225 787.7 2513 29.0
QL04p053202 Quercus lobata HOM05D004910 ORTHO05D006864 4.6e-215 753.4 507 75.1
SMO347G0286 Selaginella moellendorffii HOM05D004910 ORTHO05D006864 1.1e-208 732.3 1454 33.4
Actinidia21201 Actinidia chinensis HOM05D004910 ORTHO05D006864 2.8e-196 691.0 881 46.3
Psat4g215960 Pisum sativum HOM05D004910 ORTHO05D006864 6.3e-196 689.9 506 68.0
unitig_578.g16705 Utricularia gibba HOM05D004910 ORTHO05D006864 1.7e-193 681.8 638 56.3
Hma1.2p1_0353F.1_g133240 Hydrangea macrophylla HOM05D004910 ORTHO05D006864 2.8e-143 515.0 413 65.9
arahy.Tifrunner.gnm1.ann1.2JI1W5 Arachis hypogaea HOM05D004910 ORTHO05D006864 3.2e-139 501.5 384 65.1
AUR62014510 Chenopodium quinoa HOM05D004910 ORTHO05D006864 1.1e-115 423.3 406 56.7
PGR083G0666 Punica granatum HOM05D004910 ORTHO05D006864 1.0e-113 416.8 568 51.1
Prupe.2G100700 Prunus persica HOM05D004910 ORTHO05D006864 2.5e-112 412.1 358 61.7
AUR62038025 Chenopodium quinoa HOM05D004910 ORTHO05D006864 3.3e-112 411.8 406 55.4
CSS0010640 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 2.7e-106 392.1 342 62.0
Cpa.g.sc73.62 Carica papaya HOM05D004910 ORTHO05D006864 2.6e-101 375.6 216 83.8
Solyc01g081420.3 Solanum lycopersicum HOM05D004910 ORTHO05D006864 1.4e-97 363.2 216 79.2
Actinidia21200 Actinidia chinensis HOM05D004910 ORTHO05D006864 1.1e-91 343.6 339 58.1
Peaxi162Scf00907g00123 Petunia axillaris HOM05D004910 ORTHO05D006864 2.7e-90 339.0 230 71.7
Haze_15794 Corylus avellana HOM05D004910 ORTHO05D006864 2.2e-87 329.3 182 86.3
Cpa.g.sc73.57 Carica papaya HOM05D004910 ORTHO05D006864 1.4e-78 300.1 350 60.6
Actinidia31737 Actinidia chinensis HOM05D004910 ORTHO05D006864 1.0e-73 283.9 555 36.8
CDE12G0963 Ceratophyllum demersum HOM05D004910 ORTHO05D006864 2.7e-66 259.2 380 52.4
Psat4g216320 Pisum sativum HOM05D004910 ORTHO05D006864 1.8e-65 256.5 306 61.8
VMungo0331G1288 Vigna mungo HOM05D004910 ORTHO05D010195 1.9e-59 236.5 128 85.9
Cpa.g.sc73.59 Carica papaya HOM05D004910 ORTHO05D006864 1.6e-58 233.4 275 48.7
Gohir.A11G225602 Gossypium hirsutum HOM05D004910 ORTHO05D006864 9.2e-54 217.6 153 68.6
AagrBONN_evm.TU.Sc2ySwM_117.2552 Anthoceros agrestis HOM05D004910 ORTHO05D006864 3.0e-52 212.6 208 52.4
Rhsim07G0047400 Rhododendron simsii HOM05D004910 ORTHO05D006864 9.8e-48 197.6 162 69.8
vmacro13596 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 6.4e-47 194.9 162 68.5
PGSC0003DMG400031109 Solanum tuberosum HOM05D004910 ORTHO05D006864 9.2e-46 191.0 217 56.7
Lj9A617T57 Lonicera japonica HOM05D004910 ORTHO05D006864 2.3e-44 186.4 142 69.7
CSS0010022 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 2.8e-42 179.5 125 72.0
CSS0036242 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 3.6e-42 179.1 125 72.0
Os10g0581000 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 1.9e-35 156.8 345 44.6
CSS0002002 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 3.6e-34 152.5 73 94.5
CSS0008041 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 3.6e-34 152.5 73 94.5
CSS0011325 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 1.4e-33 150.6 147 53.7
Actinidia21203 Actinidia chinensis HOM05D004910 ORTHO05D006864 3.9e-28 132.5 64 92.2
SEGI_03241 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 6.6e-28 131.7 95 67.4
FvH4_1g21580 Fragaria vesca HOM05D004910 ORTHO05D045425 2.4e-25 123.2 172 45.3
SEGI_03420 Sequoiadendron giganteum HOM05D004910 ORTHO05D006864 3.1e-25 122.9 177 49.2
Os04g0218701 Oryza sativa ssp. japonica HOM05D004910 ORTHO05D006864 5.8e-24 118.6 383 39.9
Psat6g100000 Pisum sativum HOM05D004910 ORTHO05D030483 4.9e-23 115.5 212 37.7
ClCG00G006380 Citrullus lanatus HOM05D004910 ORTHO05D006864 6.0e-21 108.6 53 100.0
RcHm_v2.0_Chr4g0408121 Rosa chinensis HOM05D004910 ORTHO05D006864 7.8e-21 108.2 84 66.7
CSS0032650 Camellia sinensis var. sinensis HOM05D004910 ORTHO05D006864 5.6e-19 102.1 57 84.2
Dinv00622 Davidia involucrata HOM05D004910 ORTHO05D006864 9.0e-17 94.7 79 62.0
Nitab4.5_0011076g0010 Nicotiana tabacum HOM05D004910 ORTHO05D006864 9.0e-17 94.7 55 81.8
Psat0s999g0120 Pisum sativum HOM05D004910 ORTHO05D030483 4.5e-16 92.4 158 37.3
RcHm_v2.0_Chr4g0407941 Rosa chinensis HOM05D004910 ORTHO05D019205 2.2e-15 90.1 65 67.7
vmacro13595 Vaccinium macrocarpon HOM05D004910 ORTHO05D006864 8.7e-12 78.2 80 75.0
FAN23G3082 Fragaria x ananassa HOM05D004910 ORTHO05D045425 4.8e-10 72.4 101 43.6
Phvul.010G039400 Phaseolus vulgaris HOM05D004910 ORTHO05D006864 1.1e-09 71.2 55 67.3
Gohir.D06G038650 Gossypium hirsutum HOM05D004910 ORTHO05D030909 3.4e-08 66.2 55 58.2
FAN03G1104 Fragaria x ananassa HOM05D004910 ORTHO05D019205 4.5e-08 65.9 51 60.8
Actinidia21202 Actinidia chinensis HOM05D004910 ORTHO05D030909 2.2e-07 63.5 49 69.4


User provided reference genes

Program Settings