Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006197.2 Cucumis melo HOM05D005612 ORTHO05D007014 4.2e-209 731.1 367 100.0
CsaV3_3G009760 Cucumis sativus L. HOM05D005612 ORTHO05D007014 1.0e-178 630.2 335 94.6
ClCG05G002330 Citrullus lanatus HOM05D005612 ORTHO05D007014 1.1e-164 583.6 351 85.5
Sed0014004 Sechium edule HOM05D005612 ORTHO05D007014 4.6e-163 578.2 336 86.6
QL08p052678 Quercus lobata HOM05D005612 ORTHO05D007014 3.5e-131 472.2 338 71.0
GSVIVG01027677001 Vitis vinifera HOM05D005612 ORTHO05D007014 5.1e-130 468.4 336 69.3
CSS0047351 Camellia sinensis var. sinensis HOM05D005612 ORTHO05D007014 9.6e-129 464.2 336 68.5
Atru.chr2.2479 Acer truncatum HOM05D005612 ORTHO05D007014 4.8e-128 461.8 336 68.8
TAR375G1134 Trochodendron aralioides HOM05D005612 ORTHO05D007014 3.1e-127 459.1 336 68.5
Dinv43696 Davidia involucrata HOM05D005612 ORTHO05D007014 9.0e-127 457.6 327 70.3
Nn4g26368 Nelumbo nucifera HOM05D005612 ORTHO05D007014 9.9e-126 454.1 336 67.9
vmacro13411 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 1.3e-125 453.8 335 67.2
Prupe.6G155400 Prunus persica HOM05D005612 ORTHO05D007014 2.2e-125 453.0 340 69.1
Actinidia12252 Actinidia chinensis HOM05D005612 ORTHO05D007014 3.8e-125 452.2 336 65.8
Cpa.g.sc18.108 Carica papaya HOM05D005612 ORTHO05D007014 1.1e-124 450.7 333 68.5
Aqoxy3G02061 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 1.4e-124 450.3 336 66.7
Ciclev10010228m.g Citrus clementina HOM05D005612 ORTHO05D007014 1.9e-124 449.9 336 69.0
Hma1.2p1_2025F.1_g311480 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 2.4e-124 449.5 336 67.3
Aqoxy1G04104 Aquilegia oxysepala HOM05D005612 ORTHO05D007014 3.2e-124 449.1 336 66.1
DCAR_008555 Daucus carota HOM05D005612 ORTHO05D007014 1.6e-123 446.8 336 66.1
CiPaw.01G263000 Carya illinoinensis HOM05D005612 ORTHO05D007014 3.5e-123 445.7 335 68.4
Hma1.2p1_0511F.1_g169190 Hydrangea macrophylla HOM05D005612 ORTHO05D007014 1.1e-121 440.7 336 66.4
Cc02_g24020 Coffea canephora HOM05D005612 ORTHO05D007014 1.9e-121 439.9 336 65.8
Sc16g0011470 Simmondsia chinensis HOM05D005612 ORTHO05D007014 2.5e-121 439.5 330 67.9
Peaxi162Scf00045g01936 Petunia axillaris HOM05D005612 ORTHO05D007014 4.3e-121 438.7 330 65.8
Oeu055499.1 Olea europaea HOM05D005612 ORTHO05D007014 1.3e-120 437.2 333 64.3
Thecc.01G378200 Theobroma cacao HOM05D005612 ORTHO05D007014 1.6e-120 436.8 354 63.6
Gorai.004G162600 Gossypium raimondii HOM05D005612 ORTHO05D007014 2.1e-120 436.4 354 62.7
TWI14G1300 Tripterygium wilfordii HOM05D005612 ORTHO05D007014 4.8e-120 435.3 336 64.6
Lj3g0004128 Lotus japonicus HOM05D005612 ORTHO05D007014 8.2e-120 434.5 337 69.7
Eucgr.E01443 Eucalyptus grandis HOM05D005612 ORTHO05D007014 1.1e-119 434.1 336 65.2
Carub.0004s2795 Capsella rubella HOM05D005612 ORTHO05D007014 1.4e-119 433.7 336 67.6
Sabra14G0048200 Salix brachista HOM05D005612 ORTHO05D007014 3.1e-119 432.6 330 67.3
Haze_16797 Corylus avellana HOM05D005612 ORTHO05D007014 6.9e-119 431.4 309 70.2
Potri.014G068500 Populus trichocarpa HOM05D005612 ORTHO05D007014 9.0e-119 431.0 330 66.7
RcHm_v2.0_Chr3g0497141 Rosa chinensis HOM05D005612 ORTHO05D007014 9.0e-119 431.0 337 65.9
Nitab4.5_0000264g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 2.0e-118 429.9 335 63.9
MD00G1094900 Malus domestica HOM05D005612 ORTHO05D007014 3.4e-118 429.1 345 65.2
PSO339G2081 Papaver somniferum HOM05D005612 ORTHO05D007014 3.4e-118 429.1 332 65.4
Gohir.A08G135500 Gossypium hirsutum HOM05D005612 ORTHO05D007014 7.6e-118 427.9 354 61.6
Lalb_Chr03g0039601 Lupinus albus HOM05D005612 ORTHO05D007014 1.3e-117 427.2 336 67.3
Manes.01G266600 Manihot esculenta HOM05D005612 ORTHO05D007014 1.7e-117 426.8 336 63.7
PSO384G4101 Papaver somniferum HOM05D005612 ORTHO05D007014 4.9e-117 425.2 331 65.0
Duzib138G1608 Durio zibethinus HOM05D005612 ORTHO05D007014 6.5e-117 424.9 354 62.1
TPR.G17234 Trifolium pratense HOM05D005612 ORTHO05D007014 1.1e-116 424.1 335 65.7
Lalb_Chr01g0021461 Lupinus albus HOM05D005612 ORTHO05D007014 1.4e-116 423.7 336 67.0
Solyc08g006610.3 Solanum lycopersicum HOM05D005612 ORTHO05D007014 2.5e-116 422.9 335 63.3
COL.COLO4_12531 Corchorus olitorius HOM05D005612 ORTHO05D007014 4.2e-116 422.2 330 64.5
Phvul.011G138100 Phaseolus vulgaris HOM05D005612 ORTHO05D007014 4.2e-116 422.2 336 65.8
THA.LOC104827614 Tarenaya hassleriana HOM05D005612 ORTHO05D007014 1.2e-115 420.6 336 63.1
FAN28G0581 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.6e-115 420.2 337 63.5
Psat0s2995g0040 Pisum sativum HOM05D005612 ORTHO05D007014 1.6e-115 420.2 335 65.4
Sopen08g002560 Solanum pennellii HOM05D005612 ORTHO05D007014 1.6e-115 420.2 335 63.0
ECA236G2759 Erigeron canadensis HOM05D005612 ORTHO05D007014 6.0e-115 418.3 337 62.0
Manes.05G046700 Manihot esculenta HOM05D005612 ORTHO05D007014 6.0e-115 418.3 296 69.9
AL4G44420 Arabidopsis lyrata HOM05D005612 ORTHO05D007014 1.0e-114 417.5 338 64.8
FvH4_1g28100 Fragaria vesca HOM05D005612 ORTHO05D007014 1.0e-114 417.5 337 63.5
Glyma.12G134000 Glycine max HOM05D005612 ORTHO05D007014 1.0e-114 417.5 337 65.6
Cfa015219 Carpinus fangiana HOM05D005612 ORTHO05D007014 1.3e-114 417.2 330 65.2
FAN23G2738 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.3e-114 417.2 337 63.2
FAN28G2973 Fragaria x ananassa HOM05D005612 ORTHO05D007014 1.8e-114 416.8 337 63.2
MSTRG.17178 Avicennia marina HOM05D005612 ORTHO05D007014 2.3e-114 416.4 335 62.7
CAN.G530.1 Capsicum annuum HOM05D005612 ORTHO05D007014 2.3e-114 416.4 335 62.7
CANSAT01G1400 Cannabis sativa HOM05D005612 ORTHO05D007014 3.0e-114 416.0 328 64.3
Medtr4g053430 Medicago truncatula HOM05D005612 ORTHO05D007014 3.0e-114 416.0 295 72.2
AUR62000130 Chenopodium quinoa HOM05D005612 ORTHO05D007014 1.5e-113 413.7 346 62.7
Ca_19396_v3 Cicer arietinum L. HOM05D005612 ORTHO05D007014 1.5e-113 413.7 327 66.4
EL10Ac4g10240 Beta vulgaris HOM05D005612 ORTHO05D007014 2.5e-113 412.9 330 63.6
AT2G45320 Arabidopsis thaliana HOM05D005612 ORTHO05D007014 3.3e-113 412.5 337 64.4
arahy.Tifrunner.gnm1.ann1.Q1YE57 Arachis hypogaea HOM05D005612 ORTHO05D007014 7.4e-113 411.4 331 65.3
FAN26G0204 Fragaria x ananassa HOM05D005612 ORTHO05D007014 9.6e-113 411.0 359 59.6
Gohir.D08G156300 Gossypium hirsutum HOM05D005612 ORTHO05D007014 9.6e-113 411.0 290 69.0
arahy.Tifrunner.gnm1.ann1.39QM8U Arachis hypogaea HOM05D005612 ORTHO05D007014 1.6e-112 410.2 331 65.0
Hund07502 Selenicereus undatus HOM05D005612 ORTHO05D007014 2.8e-112 409.5 354 60.7
Thhalv10001485m.g Eutrema salsugineum HOM05D005612 ORTHO05D007014 3.7e-112 409.1 337 62.9
PGSC0003DMG400026305 Solanum tuberosum HOM05D005612 ORTHO05D007014 4.8e-112 408.7 311 64.6
BraA03t11718Z Brassica rapa HOM05D005612 ORTHO05D007014 1.1e-111 407.5 337 62.0
A03p25180 Brassica napus HOM05D005612 ORTHO05D007014 1.8e-111 406.8 337 61.7
Glyma.06G270700 Glycine max HOM05D005612 ORTHO05D007014 1.8e-111 406.8 339 64.3
PGR042G0232 Punica granatum HOM05D005612 ORTHO05D007014 9.0e-111 404.4 334 62.6
Migut.B01623 Erythranthe guttata HOM05D005612 ORTHO05D007014 1.5e-110 403.7 335 60.0
HanXRQChr04g0122751 Helianthus annuus HOM05D005612 ORTHO05D007014 2.6e-110 402.9 336 63.1
Lsat_1_v5_gn_7_9741 Lactuca sativa HOM05D005612 ORTHO05D007014 1.7e-109 400.2 310 65.5
Sp4g27340 Schrenkiella parvula HOM05D005612 ORTHO05D007014 5.0e-109 398.7 337 62.0
BcaB01g03271 Brassica carinata HOM05D005612 ORTHO05D007014 1.1e-108 397.5 337 60.5
C03p30020 Brassica napus HOM05D005612 ORTHO05D007014 2.5e-108 396.4 338 60.9
BcaC01g05140 Brassica carinata HOM05D005612 ORTHO05D007014 3.2e-108 396.0 337 61.4
BolC3t15349H Brassica oleracea HOM05D005612 ORTHO05D007014 3.2e-108 396.0 337 61.4
Lsat_1_v5_gn_8_86120 Lactuca sativa HOM05D005612 ORTHO05D007014 4.2e-108 395.6 309 64.7
vmacro21020 Vaccinium macrocarpon HOM05D005612 ORTHO05D007014 4.6e-107 392.1 335 60.6
SalBow5G3218 Salvia bowleyana HOM05D005612 ORTHO05D007014 2.3e-106 389.8 298 64.8
unitig_749.g14376 Utricularia gibba HOM05D005612 ORTHO05D007014 2.8e-104 382.9 335 59.4
Lj7C530T5 Lonicera japonica HOM05D005612 ORTHO05D007014 1.8e-103 380.2 365 55.9
Ah.04g161950 Amaranthus hybridus HOM05D004275 ORTHO05D005720 1.5e-102 377.1 373 55.2
CDE07G1659 Ceratophyllum demersum HOM05D005612 ORTHO05D007014 1.6e-99 367.1 331 56.2
Nitab4.5_0005450g0010 Nicotiana tabacum HOM05D005612 ORTHO05D007014 4.6e-99 365.5 332 56.6
ATR1100G025 Amborella trichopoda HOM05D005612 ORTHO05D007014 1.2e-94 350.9 312 59.3
Zm00001eb195050 Zea mays HOM05D005612 ORTHO05D007014 1.4e-87 327.4 325 54.2
ATR0686G054 Amborella trichopoda HOM05D005612 ORTHO05D007014 1.0e-82 311.2 252 62.7
AUR62019310 Chenopodium quinoa HOM05D005612 ORTHO05D007014 4.0e-82 309.3 210 70.5
VMungo1127G0102 Vigna mungo HOM05D005612 ORTHO05D007014 1.8e-79 300.4 198 70.7
SGA_v2.0_scaffold153G37000 Striga asiatica HOM05D005612 ORTHO05D007014 8.3e-72 275.0 227 62.6
Dinv32369 Davidia involucrata HOM05D005612 ORTHO05D007014 5.4e-71 272.3 226 64.6
MBI14_g08144_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 3.8e-69 266.2 215 62.3
unitig_76.g29085 Utricularia gibba HOM05D005612 ORTHO05D007014 3.0e-66 256.5 335 45.7
CARHR140520 Cardamine hirsuta HOM05D005612 ORTHO05D007014 3.8e-61 239.6 149 75.8
CiPaw.09G176500 Carya illinoinensis HOM05D005612 ORTHO05D007014 7.3e-60 235.3 271 48.0
Zm00001eb012290 Zea mays HOM05D005612 ORTHO05D007014 8.0e-59 231.9 178 62.4
Aa31LG1G26830 Aethionema arabicum HOM05D005612 ORTHO05D007014 8.9e-58 228.4 133 78.2
SMO119G0175 Selaginella moellendorffii HOM05D005612 ORTHO05D007014 3.1e-50 203.4 225 46.7
Zm00001eb249030 Zea mays HOM05D005612 ORTHO05D007014 2.6e-49 200.3 149 65.1
AagrBONN_evm.TU.Sc2ySwM_117.669 Anthoceros agrestis HOM05D005612 ORTHO05D007014 1.3e-48 198.0 203 48.3
Duzib138G0844 Durio zibethinus HOM05D005612 ORTHO05D007014 2.0e-46 190.7 110 79.1
CARHR140530 Cardamine hirsuta HOM05D005612 ORTHO05D007014 1.0e-45 188.3 187 57.8
Medtr8g102045 Medicago truncatula HOM05D005612 ORTHO05D007014 1.6e-43 181.0 124 71.8
Zm00001eb385140 Zea mays HOM05D005612 ORTHO05D007014 6.4e-40 169.1 133 60.9
Zm00001eb084960 Zea mays HOM05D005612 ORTHO05D007014 8.3e-40 168.7 133 60.9
Oeu011925.1 Olea europaea HOM05D005612 ORTHO05D007014 3.1e-34 150.2 199 42.7
Pp3c17_6010 Physcomitrium patens HOM05D005612 ORTHO05D007014 3.8e-32 143.3 157 46.5
Gohir.A08G135200 Gossypium hirsutum HOM05D005612 ORTHO05D007014 7.1e-31 139.0 168 50.0
FAN19G0199 Fragaria x ananassa HOM05D005612 ORTHO05D007014 3.9e-29 133.3 77 75.3
SEGI_33395 Sequoiadendron giganteum HOM05D005612 ORTHO05D007014 6.6e-29 132.5 175 45.1
Gohir.A08G135550 Gossypium hirsutum HOM05D005612 ORTHO05D007014 4.9e-24 116.3 104 59.6
MBI14_g08143_MAGBIO Magnolia biondii HOM05D005612 ORTHO05D007014 4.9e-24 116.3 114 57.0
Zm00001eb321930 Zea mays HOM05D005612 ORTHO05D007014 9.3e-23 112.1 109 53.2
Haze_18350 Corylus avellana HOM05D005612 ORTHO05D007014 1.0e-21 108.6 73 69.9
MSTRG.28297 Avicennia marina HOM05D005612 ORTHO05D007014 1.3e-19 101.7 60 73.3
Glyma.20G076400 Glycine max HOM05D005612 ORTHO05D007014 2.0e-17 94.4 98 50.0
Rhsim01G0149000 Rhododendron simsii HOM05D005612 ORTHO05D007014 1.1e-15 88.6 198 31.8
Zm00001eb270960 Zea mays HOM05D005612 ORTHO05D002685 2.7e-14 84.0 55 70.9
Os06g0571300 Oryza sativa ssp. japonica HOM05D005612 ORTHO05D007014 2.3e-13 80.9 93 53.8
Medtr8g102042 Medicago truncatula HOM05D005612 ORTHO05D007014 3.3e-12 77.0 68 66.2
Medtr8g102040 Medicago truncatula HOM05D005612 ORTHO05D007014 5.8e-09 66.2 78 42.3
TAR626G0370 Trochodendron aralioides HOM05D005612 ORTHO05D007014 9.9e-09 65.5 34 76.5


User provided reference genes

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