Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006127.2 Cucumis melo HOM05D006991 ORTHO05D009188 0.0e+00 1296.6 634 100.0
CsaV3_3G009060 Cucumis sativus L. HOM05D006991 ORTHO05D009188 0.0e+00 1215.3 624 95.0
ClCG05G001680 Citrullus lanatus HOM05D006991 ORTHO05D009188 0.0e+00 1148.3 631 89.2
Sed0028010 Sechium edule HOM05D006991 ORTHO05D009188 0.0e+00 1079.7 632 83.4
Lj3g0006815 Lotus japonicus HOM05D006991 ORTHO05D009188 1.4e-255 886.3 652 67.9
TPR.G4402 Trifolium pratense HOM05D006991 ORTHO05D009188 3.0e-255 885.2 650 68.0
Ciclev10019238m.g Citrus clementina HOM05D006991 ORTHO05D009188 3.9e-255 884.8 650 67.4
Lalb_Chr04g0256761 Lupinus albus HOM05D006991 ORTHO05D009188 6.7e-255 884.0 651 67.4
Glyma.07G073500 Glycine max HOM05D006991 ORTHO05D009188 1.7e-253 879.4 651 68.0
Haze_15467 Corylus avellana HOM05D006991 ORTHO05D009188 2.8e-253 878.6 646 68.0
GSVIVG01026850001 Vitis vinifera HOM05D006991 ORTHO05D009188 4.1e-252 874.8 650 66.2
Potri.002G157400 Populus trichocarpa HOM05D006991 ORTHO05D009188 1.5e-251 872.8 643 67.3
Medtr8g031480 Medicago truncatula HOM05D006991 ORTHO05D009188 3.5e-251 871.7 654 66.1
RcHm_v2.0_Chr1g0354041 Rosa chinensis HOM05D006991 ORTHO05D009188 5.9e-251 870.9 648 66.7
FvH4_7g13830 Fragaria vesca HOM05D006991 ORTHO05D009188 1.0e-250 870.2 648 67.0
Nn6g33525 Nelumbo nucifera HOM05D006991 ORTHO05D009188 1.0e-250 870.2 636 66.2
TWI23G0867 Tripterygium wilfordii HOM05D006991 ORTHO05D009188 1.0e-250 870.2 641 67.4
CANSAT56G3382 Cannabis sativa HOM05D006991 ORTHO05D009188 2.2e-250 869.0 652 66.3
FAN03G2057 Fragaria x ananassa HOM05D006991 ORTHO05D009188 2.2e-250 869.0 648 66.7
Prupe.2G164100 Prunus persica HOM05D006991 ORTHO05D009188 5.0e-250 867.8 649 67.6
QL08p049512 Quercus lobata HOM05D006991 ORTHO05D009188 8.8e-247 857.1 650 66.6
COL.COLO4_12678 Corchorus olitorius HOM05D006991 ORTHO05D009188 5.7e-246 854.4 654 66.2
MD01G1054400 Malus domestica HOM05D006991 ORTHO05D009188 5.7e-246 854.4 641 65.7
FAN06G2381 Fragaria x ananassa HOM05D006991 ORTHO05D009188 4.8e-245 851.3 686 63.1
Dinv43786 Davidia involucrata HOM05D006991 ORTHO05D009188 1.4e-244 849.7 656 64.5
FAN10G0464 Fragaria x ananassa HOM05D006991 ORTHO05D009188 2.4e-244 849.0 675 63.7
Duzib138G0243 Durio zibethinus HOM05D006991 ORTHO05D009188 2.0e-243 845.9 660 65.5
Thecc.01G363100 Theobroma cacao HOM05D006991 ORTHO05D009188 1.3e-242 843.2 650 66.0
Cfa003952 Carpinus fangiana HOM05D006991 ORTHO05D009188 4.2e-241 838.2 652 65.3
PGR042G0621 Punica granatum HOM05D006991 ORTHO05D009188 7.2e-241 837.4 650 63.4
FAN06G3007 Fragaria x ananassa HOM05D006991 ORTHO05D009188 3.6e-240 835.1 668 63.8
VMungo0331G1855 Vigna mungo HOM05D006991 ORTHO05D009188 3.6e-240 835.1 640 65.8
FAN01G0340 Fragaria x ananassa HOM05D006991 ORTHO05D009188 4.7e-240 834.7 668 63.8
Ah.05g176510 Amaranthus hybridus HOM05D006991 ORTHO05D009188 3.0e-239 832.0 643 65.2
Atru.chr5.484 Acer truncatum HOM05D006991 ORTHO05D009188 5.2e-239 831.2 608 67.9
HanXRQChr04g0121651 Helianthus annuus HOM05D006991 ORTHO05D009188 2.6e-238 828.9 642 63.9
Eucgr.E00177 Eucalyptus grandis HOM05D006991 ORTHO05D009188 4.4e-238 828.2 665 63.6
ATR0680G083 Amborella trichopoda HOM05D006991 ORTHO05D009188 1.8e-236 822.8 654 62.8
AUR62004323 Chenopodium quinoa HOM05D006991 ORTHO05D009188 2.4e-236 822.4 654 63.8
Lsat_1_v5_gn_7_5201 Lactuca sativa HOM05D006991 ORTHO05D009188 4.1e-236 821.6 647 62.8
Cc02_g37710 Coffea canephora HOM05D006991 ORTHO05D009188 7.0e-236 820.8 642 62.3
Aqoxy5G03423_Aqoxy5G03424 Aquilegia oxysepala HOM05D006991 ORTHO05D009188 1.2e-235 820.1 648 64.5
MSTRG.28216 Avicennia marina HOM05D006991 ORTHO05D009188 1.2e-235 820.1 641 63.3
THA.LOC104801448 Tarenaya hassleriana HOM05D006991 ORTHO05D009188 1.7e-234 816.2 648 62.3
Cpa.g.sc18.226 Carica papaya HOM05D006991 ORTHO05D009188 2.2e-234 815.8 662 62.4
DCAR_015941 Daucus carota HOM05D006991 ORTHO05D009188 2.2e-234 815.8 645 62.0
Gohir.D07G148700 Gossypium hirsutum HOM05D006991 ORTHO05D009188 1.5e-233 813.1 649 64.3
Gorai.001G170100 Gossypium raimondii HOM05D006991 ORTHO05D009188 1.9e-233 812.8 649 64.1
PSO063G6634 Papaver somniferum HOM05D006991 ORTHO05D009188 1.9e-233 812.8 643 63.6
Rhsim07G0017800 Rhododendron simsii HOM05D006991 ORTHO05D009188 2.5e-233 812.4 634 64.5
CSS0011179 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 5.5e-233 811.2 647 63.5
Lj9A581T68 Lonicera japonica HOM05D006991 ORTHO05D009188 7.2e-233 810.8 640 62.2
Nitab4.5_0002160g0070 Nicotiana tabacum HOM05D006991 ORTHO05D009188 8.0e-232 807.4 636 63.2
CDE05G1529 Ceratophyllum demersum HOM05D006991 ORTHO05D009188 3.0e-231 805.4 651 62.4
Migut.N01431 Erythranthe guttata HOM05D006991 ORTHO05D009188 8.8e-231 803.9 638 61.9
Nitab4.5_0009210g0040 Nicotiana tabacum HOM05D006991 ORTHO05D009188 2.0e-230 802.7 636 62.7
CAN.G78.50 Capsicum annuum HOM05D006991 ORTHO05D009188 9.8e-230 800.4 643 62.4
AT1G01770 Arabidopsis thaliana HOM05D006991 ORTHO05D009188 1.3e-229 800.0 636 64.0
Sp1g00530 Schrenkiella parvula HOM05D006991 ORTHO05D009188 3.7e-229 798.5 643 62.7
Peaxi162Scf00020g00011 Petunia axillaris HOM05D006991 ORTHO05D009188 4.8e-229 798.1 660 60.9
ECA236G3544 Erigeron canadensis HOM05D006991 ORTHO05D009188 4.1e-228 795.0 641 62.1
Thhalv10007047m.g Eutrema salsugineum HOM05D006991 ORTHO05D009188 7.0e-228 794.3 639 62.8
PGSC0003DMG400000156 Solanum tuberosum HOM05D006991 ORTHO05D009188 7.0e-228 794.3 637 62.5
SGA_v2.0_scaffold43G16441 Striga asiatica HOM05D006991 ORTHO05D009188 9.1e-228 793.9 639 61.0
SalBow5G3488 Salvia bowleyana HOM05D006991 ORTHO05D009188 1.6e-227 793.1 656 61.7
SalBow5G3803 Salvia bowleyana HOM05D006991 ORTHO05D009188 1.6e-227 793.1 656 61.7
Aa31LG1G11140 Aethionema arabicum HOM05D006991 ORTHO05D009188 3.5e-227 792.0 653 62.3
Hund27298 Selenicereus undatus HOM05D006991 ORTHO05D002850 4.5e-227 791.6 645 62.2
AL1G10570 Arabidopsis lyrata HOM05D006991 ORTHO05D009188 2.9e-226 788.9 636 63.2
BolC8t52898H Brassica oleracea HOM05D006991 ORTHO05D009188 8.6e-226 787.3 641 64.0
Carub.0001s0044 Capsella rubella HOM05D006991 ORTHO05D009188 8.6e-226 787.3 641 62.9
Hma1.2p1_0001F.1_g001590 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 1.5e-225 786.6 646 62.8
Sc26g0001000 Simmondsia chinensis HOM05D006991 ORTHO05D009188 1.5e-225 786.6 635 63.9
Sopen01g038120 Solanum pennellii HOM05D006991 ORTHO05D009188 4.7e-224 781.6 641 61.2
Gohir.A07G142900 Gossypium hirsutum HOM05D006991 ORTHO05D009188 5.2e-223 778.1 651 62.2
CSS0000914 Camellia sinensis var. sinensis HOM05D006991 ORTHO05D009188 1.2e-222 776.9 625 62.7
Os07g0457300 Oryza sativa ssp. japonica HOM05D006991 ORTHO05D009188 1.2e-222 776.9 645 61.1
BraA09t42261Z Brassica rapa HOM05D006991 ORTHO05D009188 3.4e-222 775.4 631 63.7
vmacro13305 Vaccinium macrocarpon HOM05D006991 ORTHO05D009188 3.4e-222 775.4 681 59.8
Psat4g154080 Pisum sativum HOM05D006991 ORTHO05D009188 4.4e-222 775.0 596 64.9
C08p53830 Brassica napus HOM05D006991 ORTHO05D009188 1.7e-221 773.1 631 63.5
Solyc01g094330.3 Solanum lycopersicum HOM05D006991 ORTHO05D009188 5.9e-219 764.6 669 58.6
Zm00001eb306550 Zea mays HOM05D006991 ORTHO05D009188 1.3e-218 763.5 647 60.4
HPP92_004979 Vanilla planifolia HOM05D006991 ORTHO05D009188 2.2e-213 746.1 634 58.5
EL10Ac1g00536 Beta vulgaris HOM05D006991 ORTHO05D009188 4.9e-205 718.4 632 59.7
unitig_748.g7107 Utricularia gibba HOM05D006991 ORTHO05D009188 1.2e-198 697.2 598 59.5
arahy.Tifrunner.gnm1.ann1.NT7Z8Q Arachis hypogaea HOM05D006991 ORTHO05D009188 9.9e-198 694.1 641 57.7
Hma1.2p1_0001F.1_g001600 Hydrangea macrophylla HOM05D006991 ORTHO05D009188 5.2e-191 671.8 497 68.0
CiPaw.02G028700 Carya illinoinensis HOM05D006991 ORTHO05D009188 6.8e-191 671.4 458 71.0
Pp3c9_2540 Physcomitrium patens HOM05D006991 ORTHO05D009188 2.8e-184 649.4 625 53.0
Actinidia10005 Actinidia chinensis HOM05D006991 ORTHO05D009188 2.0e-182 643.3 531 61.8
SMO164G0214 Selaginella moellendorffii HOM05D006991 ORTHO05D009188 3.9e-178 629.0 616 52.3
arahy.Tifrunner.gnm1.ann1.JH251T Arachis hypogaea HOM05D006991 ORTHO05D009188 5.6e-177 625.2 627 53.4
MBI18_g09765_MAGBIO Magnolia biondii HOM05D006991 ORTHO05D009188 1.3e-162 577.4 515 58.1
Ca_23659_v3 Cicer arietinum L. HOM05D006991 ORTHO05D009188 1.8e-162 577.0 621 51.4
Phvul.010G096000 Phaseolus vulgaris HOM05D006991 ORTHO05D009188 2.8e-152 543.1 362 71.3
CARHR000550 Cardamine hirsuta HOM05D006991 ORTHO05D009188 8.8e-146 521.5 417 62.6
Manes.01G259800 Manihot esculenta HOM05D006991 ORTHO05D009188 9.7e-137 491.5 330 70.9
TAR375G0043 Trochodendron aralioides HOM05D006991 ORTHO05D009188 2.9e-133 479.9 335 67.8
AagrBONN_evm.TU.Sc2ySwM_344.4948 Anthoceros agrestis HOM05D006991 ORTHO05D009188 9.7e-129 464.9 474 50.8
RcHm_v2.0_Chr1g0354021 Rosa chinensis HOM05D006991 ORTHO05D009188 7.0e-103 379.0 412 50.5
EL10Ac1g02136 Beta vulgaris HOM05D006991 ORTHO05D009188 2.9e-72 277.3 269 55.4
Sabra02G0125100 Salix brachista HOM05D006991 ORTHO05D009188 1.7e-69 268.1 188 69.7
EL10Ac3g06779 Beta vulgaris HOM05D006991 ORTHO05D009188 2.6e-65 254.2 188 62.2
HanXRQChr01g0021681 Helianthus annuus HOM05D006991 ORTHO05D009188 1.6e-62 245.0 191 61.3
QL09p021383 Quercus lobata HOM05D006991 ORTHO05D009188 2.1e-54 218.0 163 66.9
Ca_23662_v3 Cicer arietinum L. HOM05D006991 ORTHO05D028457 7.1e-47 193.0 131 71.0
AUR62033321 Chenopodium quinoa HOM05D006991 ORTHO05D028457 6.7e-45 186.4 129 68.2
EL10Ac5g11247 Beta vulgaris HOM05D006991 ORTHO05D009188 5.7e-44 183.3 192 51.6
AUR62003727 Chenopodium quinoa HOM05D001417 ORTHO05D001496 5.7e-44 183.3 140 64.3
PSO782G3099 Papaver somniferum HOM05D006991 ORTHO05D028457 5.1e-37 160.2 178 50.0
HanXRQChr01g0025441 Helianthus annuus HOM05D006991 ORTHO05D009188 1.4e-31 142.1 73 86.3
HanXRQChr03g0092981 Helianthus annuus HOM05D006991 ORTHO05D226355 6.1e-30 136.7 101 61.4
CAN.G1527.6 Capsicum annuum HOM05D006991 ORTHO05D028457 9.1e-26 122.9 103 58.3
CAN.G226.8 Capsicum annuum HOM05D006991 ORTHO05D000001 5.1e-21 107.1 63 77.8
AUR62036784 Chenopodium quinoa HOM05D006991 ORTHO05D138340 5.3e-18 97.1 78 65.4


User provided reference genes

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