Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006104.2 Cucumis melo HOM05D001925 ORTHO05D004257 1.5e-172 609.4 305 100.0
CsaV3_3G008850 Cucumis sativus L. HOM05D001925 ORTHO05D004257 2.8e-166 588.6 305 96.7
ClCG05G001470 Citrullus lanatus HOM05D001925 ORTHO05D004257 1.2e-156 556.6 305 90.8
Sed0006621 Sechium edule HOM05D001925 ORTHO05D004257 2.5e-130 469.2 305 80.0
Sed0020685 Sechium edule HOM05D001925 ORTHO05D004257 8.5e-123 444.1 305 77.7
Atru.chr5.510 Acer truncatum HOM05D001925 ORTHO05D004257 5.6e-82 308.5 310 56.1
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 9.6e-82 307.8 309 58.3
Dinv32493 Davidia involucrata HOM05D001925 ORTHO05D004257 1.2e-81 307.4 309 56.3
CSS0032978 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D004257 3.1e-80 302.8 312 54.5
CANSAT21G1319 Cannabis sativa HOM05D001925 ORTHO05D004257 4.4e-79 298.9 308 56.2
Ciclev10021244m.g Citrus clementina HOM05D001925 ORTHO05D004257 1.3e-78 297.4 307 53.4
Thecc.01G357700 Theobroma cacao HOM05D001925 ORTHO05D004257 2.2e-78 296.6 317 55.5
RcHm_v2.0_Chr1g0355951 Rosa chinensis HOM05D001925 ORTHO05D004257 3.8e-78 295.8 313 57.2
Duzib133G0433 Durio zibethinus HOM05D001925 ORTHO05D004257 8.4e-78 294.7 311 55.0
TAR375G1105 Trochodendron aralioides HOM05D001925 ORTHO05D004257 1.9e-77 293.5 310 54.8
Phvul.008G061700 Phaseolus vulgaris HOM05D001925 ORTHO05D004257 2.1e-76 290.0 310 53.5
VMungo1383G2450 Vigna mungo HOM05D001925 ORTHO05D004257 6.0e-76 288.5 309 53.1
CiPaw.02G032000 Carya illinoinensis HOM05D001925 ORTHO05D004257 2.3e-75 286.6 281 57.7
Glyma.18G234100 Glycine max HOM05D001925 ORTHO05D004257 2.3e-75 286.6 308 53.6
Nn6g33385 Nelumbo nucifera HOM05D001925 ORTHO05D004257 3.9e-75 285.8 310 52.3
QL04p053608 Quercus lobata HOM05D001925 ORTHO05D004257 3.9e-75 285.8 283 58.7
arahy.Tifrunner.gnm1.ann1.IGP217 Arachis hypogaea HOM05D001925 ORTHO05D004257 5.1e-75 285.4 306 54.6
Prupe.2G172100 Prunus persica HOM05D001925 ORTHO05D004257 5.1e-75 285.4 314 54.1
TAR629G3070 Trochodendron aralioides HOM05D001925 ORTHO05D004257 8.7e-75 284.6 310 52.3
arahy.Tifrunner.gnm1.ann1.E5DFEG Arachis hypogaea HOM05D001925 ORTHO05D004257 1.9e-74 283.5 306 54.2
Potri.014G086000 Populus trichocarpa HOM05D001925 ORTHO05D004257 1.9e-74 283.5 303 55.4
Sabra14G0062300 Salix brachista HOM05D001925 ORTHO05D004257 2.5e-74 283.1 301 55.5
Duzib138G1880 Durio zibethinus HOM05D001925 ORTHO05D004257 3.3e-74 282.7 315 53.3
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 9.6e-74 281.2 312 53.8
Glyma.09G258600 Glycine max HOM05D001925 ORTHO05D004257 9.6e-74 281.2 311 54.0
Nn1g01562 Nelumbo nucifera HOM05D001925 ORTHO05D004257 1.3e-73 280.8 309 50.5
TAR374G1741 Trochodendron aralioides HOM05D001925 ORTHO05D004257 2.8e-73 279.6 315 50.8
Gohir.A11G089800 Gossypium hirsutum HOM05D001925 ORTHO05D004257 6.9e-72 275.0 306 52.9
Gorai.007G100500 Gossypium raimondii HOM05D001925 ORTHO05D004257 6.9e-72 275.0 306 52.9
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 1.2e-71 274.2 293 56.0
Actinidia02837 Actinidia chinensis HOM05D001925 ORTHO05D004257 2.6e-71 273.1 311 51.4
FAN10G2559 Fragaria x ananassa HOM05D001925 ORTHO05D004257 4.5e-71 272.3 322 54.3
Gohir.D11G094100 Gossypium hirsutum HOM05D001925 ORTHO05D004257 5.8e-71 271.9 306 52.9
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.3e-70 270.8 313 54.6
FvH4_7g14520 Fragaria vesca HOM05D001925 ORTHO05D004257 1.7e-70 270.4 313 54.6
FAN06G4809 Fragaria x ananassa HOM05D001925 ORTHO05D004257 3.8e-70 269.2 313 54.3
FAN10G1179 Fragaria x ananassa HOM05D001925 ORTHO05D004257 3.8e-70 269.2 313 54.3
MBI18_g02843_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 4.9e-70 268.9 315 48.3
Manes.01G255700 Manihot esculenta HOM05D001925 ORTHO05D004257 6.4e-70 268.5 309 52.8
Potri.002G160700 Populus trichocarpa HOM05D001925 ORTHO05D004257 8.4e-70 268.1 301 52.5
FAN06G3089 Fragaria x ananassa HOM05D001925 ORTHO05D004257 1.4e-69 267.3 313 54.3
Ca_07929_v3 Cicer arietinum L. HOM05D001925 ORTHO05D004257 1.9e-69 266.9 307 50.5
Hma1.2p1_0780F.1_g216780 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 1.9e-69 266.9 328 49.4
Lj1g0025308 Lotus japonicus HOM05D001925 ORTHO05D004257 2.4e-69 266.5 305 50.8
Sabra02G0127500 Salix brachista HOM05D001925 ORTHO05D004257 2.4e-69 266.5 307 53.1
vmacro20933 Vaccinium macrocarpon HOM05D001925 ORTHO05D004257 4.2e-69 265.8 309 51.5
CiPaw.01G062900 Carya illinoinensis HOM05D001925 ORTHO05D004257 9.3e-69 264.6 303 51.5
FAN03G0610 Fragaria x ananassa HOM05D001925 ORTHO05D004257 9.3e-69 264.6 322 53.7
Medtr7g077860 Medicago truncatula HOM05D001925 ORTHO05D004257 1.6e-68 263.8 309 49.5
TPR.G37799 Trifolium pratense HOM05D001925 ORTHO05D004257 2.1e-68 263.5 307 48.2
Manes.05G033200 Manihot esculenta HOM05D001925 ORTHO05D004257 4.6e-68 262.3 308 52.9
TWI23G0808 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 7.9e-68 261.5 316 50.9
Cc02_g38170 Coffea canephora HOM05D001925 ORTHO05D004257 1.3e-67 260.8 307 51.1
Peaxi162Scf00020g00730 Petunia axillaris HOM05D001925 ORTHO05D004257 1.3e-67 260.8 305 50.5
Eucgr.D02304 Eucalyptus grandis HOM05D001925 ORTHO05D004257 1.8e-67 260.4 309 50.5
PGSC0003DMG400000175 Solanum tuberosum HOM05D001925 ORTHO05D004257 1.8e-67 260.4 306 50.3
PGR031G2850 Punica granatum HOM05D001925 ORTHO05D004257 6.7e-67 258.5 307 50.2
MD01G1065100 Malus domestica HOM05D001925 ORTHO05D004257 2.1e-65 253.4 299 52.8
MSTRG.14225 Avicennia marina HOM05D001925 ORTHO05D004257 2.8e-65 253.1 309 48.2
Hma1.2p1_0780F.1_g216750 Hydrangea macrophylla HOM05D001925 ORTHO05D004257 4.8e-65 252.3 323 47.1
Cpa.g.sc11.19 Carica papaya HOM05D001925 ORTHO05D004257 6.9e-64 248.4 310 49.7
Lalb_Chr23g0275821 Lupinus albus HOM05D001925 ORTHO05D004257 1.5e-63 247.3 311 48.2
GSVIVG01026948001 Vitis vinifera HOM05D001925 ORTHO05D004257 2.6e-63 246.5 303 49.8
MD07G1135300 Malus domestica HOM05D001925 ORTHO05D004257 7.6e-63 245.0 329 50.2
CAN.G78.91 Capsicum annuum HOM05D001925 ORTHO05D004257 1.7e-62 243.8 308 46.4
Nitab4.5_0000583g0190 Nicotiana tabacum HOM05D001925 ORTHO05D004257 1.7e-62 243.8 309 48.5
SalBow8G4919 Salvia bowleyana HOM05D001925 ORTHO05D004257 1.4e-61 240.7 306 46.4
Nitab4.5_0006018g0030 Nicotiana tabacum HOM05D001925 ORTHO05D004257 4.2e-61 239.2 306 48.0
Migut.M00740 Erythranthe guttata HOM05D001925 ORTHO05D004257 5.5e-61 238.8 308 47.1
Lj9A584T67 Lonicera japonica HOM05D001925 ORTHO05D004257 1.2e-60 237.7 280 48.9
Sopen01g038550 Solanum pennellii HOM05D001925 ORTHO05D004257 2.7e-60 236.5 307 44.3
PGR042G2528 Punica granatum HOM05D001925 ORTHO05D004257 6.0e-60 235.3 314 45.5
Ah.05g180510 Amaranthus hybridus HOM05D001925 ORTHO05D004257 2.3e-59 233.4 320 45.9
TWI59G0730 Tripterygium wilfordii HOM05D001925 ORTHO05D004257 2.3e-59 233.4 285 50.2
Nitab4.5_0000386g0060 Nicotiana tabacum HOM05D001925 ORTHO05D004257 3.9e-59 232.6 301 46.2
THA.LOC104825845 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 8.7e-59 231.5 308 46.4
Oeu005388.3 Olea europaea HOM05D001925 ORTHO05D004257 1.9e-58 230.3 308 46.1
Actinidia10041 Actinidia chinensis HOM05D001925 ORTHO05D004257 5.6e-58 228.8 284 49.6
Nitab4.5_0008206g0010 Nicotiana tabacum HOM05D001925 ORTHO05D004257 1.6e-57 227.3 302 45.0
Psat3g108000 Pisum sativum HOM05D001925 ORTHO05D004257 1.6e-57 227.3 281 48.8
Oeu031215.1 Olea europaea HOM05D001925 ORTHO05D004257 6.2e-57 225.3 312 44.2
Sc26g0000880 Simmondsia chinensis HOM05D001925 ORTHO05D004257 4.0e-56 222.6 287 46.3
Rhsim07G0013800 Rhododendron simsii HOM05D001925 ORTHO05D004257 5.3e-56 222.2 285 46.7
PSO782G1204 Papaver somniferum HOM05D001925 ORTHO05D004257 2.0e-55 220.3 308 45.5
Sopen10g006250 Solanum pennellii HOM05D001925 ORTHO05D004257 2.6e-55 219.9 304 43.8
Aqoxy7G00278 Aquilegia oxysepala HOM05D001925 ORTHO05D004257 4.5e-55 219.2 317 45.1
Solyc10g012420.3 Solanum lycopersicum HOM05D001925 ORTHO05D004257 1.0e-54 218.0 304 43.8
TAR636G0324 Trochodendron aralioides HOM05D001925 ORTHO05D004257 3.8e-54 216.1 288 46.5
Peaxi162Scf00008g02423 Petunia axillaris HOM05D001925 ORTHO05D004257 6.5e-54 215.3 304 43.8
AUR62022581 Chenopodium quinoa HOM05D001925 ORTHO05D004257 3.2e-53 213.0 342 41.2
Aa31LG5G590 Aethionema arabicum HOM05D001925 ORTHO05D004257 4.6e-52 209.1 307 43.3
Sp6g00430 Schrenkiella parvula HOM05D001925 ORTHO05D004257 2.3e-51 206.8 296 44.6
PSO478G2649 Papaver somniferum HOM05D001925 ORTHO05D004257 3.3e-50 203.0 304 44.4
Hund27265 Selenicereus undatus HOM05D001925 ORTHO05D004257 3.3e-50 203.0 264 47.0
PSO063G1799 Papaver somniferum HOM05D001925 ORTHO05D004257 4.8e-49 199.1 305 41.3
PSO017G3573 Papaver somniferum HOM05D001925 ORTHO05D004257 1.4e-48 197.6 303 41.3
EL10Ac1g00401 Beta vulgaris HOM05D001925 ORTHO05D004257 3.1e-48 196.4 252 46.8
CAN.G116.9 Capsicum annuum HOM05D001925 ORTHO05D004257 4.1e-48 196.1 302 41.4
Rhsim01G0159000 Rhododendron simsii HOM05D001925 ORTHO05D004257 1.2e-47 194.5 279 44.4
Eucgr.E00120 Eucalyptus grandis HOM05D001925 ORTHO05D004257 1.5e-47 194.1 268 44.4
Thhalv10029186m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 2.6e-47 193.4 303 42.9
CARHR248450 Cardamine hirsuta HOM05D001925 ORTHO05D004257 3.4e-47 193.0 304 42.4
PGSC0003DMG400006504 Solanum tuberosum HOM05D001925 ORTHO05D004257 1.7e-46 190.7 276 43.1
Thhalv10001583m.g Eutrema salsugineum HOM05D001925 ORTHO05D004257 2.2e-46 190.3 298 41.6
DCAR_007445 Daucus carota HOM05D001925 ORTHO05D004257 5.0e-46 189.1 277 43.3
THA.LOC104817300 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 5.0e-46 189.1 304 42.8
Sp4g28050 Schrenkiella parvula HOM05D001925 ORTHO05D004257 8.5e-46 188.3 300 41.0
SalBow3G4075 Salvia bowleyana HOM05D001925 ORTHO05D004257 2.5e-45 186.8 303 38.9
THA.LOC104817027 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 5.5e-45 185.7 270 43.0
AL4G45210 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 7.2e-45 185.3 301 41.5
ECA236G3632 Erigeron canadensis HOM05D001925 ORTHO05D004257 7.2e-45 185.3 299 38.8
AUR62004372 Chenopodium quinoa HOM05D001925 ORTHO05D004257 9.3e-45 184.9 341 40.2
Carub.0006s3688 Capsella rubella HOM05D001925 ORTHO05D004257 2.1e-44 183.7 302 39.7
HanXRQChr13g0426611 Helianthus annuus HOM05D001925 ORTHO05D004257 2.7e-44 183.3 258 43.8
arahy.Tifrunner.gnm1.ann1.2X3TQS Arachis hypogaea HOM05D001925 ORTHO05D004257 1.8e-43 180.6 309 41.7
ATR0680G064 Amborella trichopoda HOM05D001925 ORTHO05D004257 3.9e-43 179.5 310 40.3
AT2G45980 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 3.9e-43 179.5 296 41.2
CARHR141250 Cardamine hirsuta HOM05D001925 ORTHO05D004257 1.5e-42 177.6 301 38.5
unitig_749.g13536 Utricularia gibba HOM05D001925 ORTHO05D004257 4.3e-42 176.0 304 42.1
C04p06900 Brassica napus HOM05D001925 ORTHO05D004257 9.7e-42 174.9 300 39.0
BolC4t22311H Brassica oleracea HOM05D001925 ORTHO05D004257 9.7e-42 174.9 300 39.0
Carub.0004s2868 Capsella rubella HOM05D001925 ORTHO05D004257 9.7e-42 174.9 304 38.2
DCAR_025195 Daucus carota HOM05D001925 ORTHO05D004257 9.7e-42 174.9 308 37.3
AT4G00355 Arabidopsis thaliana HOM05D001925 ORTHO05D004257 2.2e-41 173.7 305 40.3
Lj6A572T61 Lonicera japonica HOM05D001925 ORTHO05D004257 2.8e-41 173.3 236 44.5
Aa31LG1G27390 Aethionema arabicum HOM05D001925 ORTHO05D004257 3.7e-41 172.9 297 39.1
Sc23g0002810 Simmondsia chinensis HOM05D001925 ORTHO05D004257 3.7e-41 172.9 275 42.5
AL6G53090 Arabidopsis lyrata HOM05D001925 ORTHO05D004257 1.1e-40 171.4 305 41.3
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 1.4e-40 171.0 308 40.3
THA.LOC104802035 Tarenaya hassleriana HOM05D001925 ORTHO05D004257 2.4e-40 170.2 300 38.3
BraA05t19560Z Brassica rapa HOM05D001925 ORTHO05D004257 3.1e-40 169.9 300 39.0
A05p05970 Brassica napus HOM05D001925 ORTHO05D004257 9.1e-40 168.3 296 38.5
Medtr2g027720 Medicago truncatula HOM05D001925 ORTHO05D004257 2.0e-39 167.2 253 43.9
A04p34180 Brassica napus HOM05D001925 ORTHO05D004257 1.1e-37 161.4 293 39.2
BraA04t18879Z Brassica rapa HOM05D001925 ORTHO05D004257 1.1e-37 161.4 293 39.2
Oeu061351.3 Olea europaea HOM05D001925 ORTHO05D004257 3.2e-37 159.8 275 37.8
C04p71970 Brassica napus HOM05D001925 ORTHO05D004257 1.2e-36 157.9 292 38.0
SGA_v2.0_scaffold55G19707 Striga asiatica HOM05D001925 ORTHO05D004257 4.6e-36 156.0 281 38.4
Lsat_1_v5_gn_7_4301 Lactuca sativa HOM05D001925 ORTHO05D004257 1.8e-35 154.1 298 35.2
BolC3t16197H Brassica oleracea HOM05D001925 ORTHO05D004257 3.9e-35 152.9 309 36.6
Migut.B01767 Erythranthe guttata HOM05D001925 ORTHO05D004257 3.9e-35 152.9 298 36.6
BcaC01g06884 Brassica carinata HOM05D001925 ORTHO05D004257 4.4e-34 149.4 306 36.6
MBI17_g42624_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 1.7e-33 147.5 191 44.5
C03p39260 Brassica napus HOM05D001925 ORTHO05D004257 2.2e-33 147.1 309 36.6
CDE08G0634 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 1.8e-32 144.1 299 33.4
BcaB01g02169 Brassica carinata HOM05D001925 ORTHO05D004257 3.1e-32 143.3 313 34.8
Lalb_Chr11g0072911 Lupinus albus HOM05D001925 ORTHO05D004257 6.9e-32 142.1 299 38.1
HPP92_025783 Vanilla planifolia HOM05D001925 ORTHO05D004257 9.1e-32 141.7 298 35.6
A03p32220 Brassica napus HOM05D001925 ORTHO05D004257 5.9e-31 139.0 310 34.5
BraA03t12392Z Brassica rapa HOM05D001925 ORTHO05D004257 5.9e-31 139.0 310 34.5
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 2.9e-30 136.7 197 46.2
HPP92_014720 Vanilla planifolia HOM05D001925 ORTHO05D004257 5.0e-30 136.0 318 35.5
CDE05G2831 Ceratophyllum demersum HOM05D001925 ORTHO05D004257 1.1e-29 134.8 260 36.5
unitig_8.g3798 Utricularia gibba HOM05D001925 ORTHO05D004257 1.9e-29 134.0 306 33.3
BolC4t28695H Brassica oleracea HOM05D001925 ORTHO05D004257 3.2e-29 133.3 297 35.0
MBI17_g35262_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D004257 2.0e-26 124.0 97 58.8
HanXRQChr04g0121161 Helianthus annuus HOM05D001925 ORTHO05D004257 1.1e-24 118.2 246 32.9
SEGI_07880 Sequoiadendron giganteum HOM05D001925 ORTHO05D004257 5.0e-22 109.4 364 28.3
Zm00001eb103050 Zea mays HOM05D001925 ORTHO05D004257 6.5e-22 109.0 262 35.5
Zm00001eb318800 Zea mays HOM05D001925 ORTHO05D004257 1.1e-21 108.2 270 34.1
Zm00001eb191080 Zea mays HOM05D001925 ORTHO05D004257 1.6e-20 104.4 292 30.1
Os04g0165300 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 3.6e-20 103.2 285 33.0
SGA_v2.0_scaffold4G02300 Striga asiatica HOM05D001925 ORTHO05D004257 6.1e-20 102.4 291 30.9
Os02g0821900 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 8.0e-20 102.1 299 29.8
Zm00001eb305930 Zea mays HOM05D001925 ORTHO05D004257 1.3e-17 94.7 290 28.3
Zm00001eb087910 Zea mays HOM05D001925 ORTHO05D004257 1.9e-13 80.9 238 28.2
SGA_v2.0_scaffold95G28831 Striga asiatica HOM05D001925 ORTHO05D004257 2.5e-13 80.5 250 28.8
Zm00001eb415260 Zea mays HOM05D001925 ORTHO05D004257 9.4e-13 78.6 241 26.6
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 1.2e-12 78.2 81 44.4
A05p05940 Brassica napus HOM05D001925 ORTHO05D004257 2.7e-12 77.0 108 41.7
BraA05t19557Z Brassica rapa HOM05D001925 ORTHO05D004257 2.7e-12 77.0 57 57.9
Os07g0418200 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D004257 1.8e-11 74.3 289 27.3
C04p06870 Brassica napus HOM05D001925 ORTHO05D004257 3.0e-11 73.6 59 55.9
BolC4t22309H Brassica oleracea HOM05D001925 ORTHO05D004257 3.0e-11 73.6 59 55.9
SMO112G0035 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 1.5e-10 71.2 146 32.9
SMO364G0089 Selaginella moellendorffii HOM05D001925 ORTHO05D004257 7.5e-10 68.9 146 32.9
Pp3c15_17300 Physcomitrium patens HOM05D001925 ORTHO05D004257 1.8e-08 64.3 78 39.7
Pp3c9_18340 Physcomitrium patens HOM05D001925 ORTHO05D004257 9.1e-08 62.0 78 34.6


User provided reference genes

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