Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
MELO3C006073.2 Cucumis melo HOM05D002932 ORTHO05D003208 1.4e-119 433.0 210 100.0
CsaV3_3G008520 Cucumis sativus L. HOM05D002932 ORTHO05D003208 2.6e-110 402.1 210 93.3
Sed0004021 Sechium edule HOM05D002932 ORTHO05D003208 1.2e-75 287.0 197 70.6
Atru.chr5.594 Acer truncatum HOM05D002932 ORTHO05D003208 1.8e-31 140.2 215 43.3
Manes.01G251500 Manihot esculenta HOM05D002932 ORTHO05D003208 3.8e-29 132.5 215 37.7
Duzib138G0190 Durio zibethinus HOM05D002932 ORTHO05D003208 6.5e-29 131.7 214 39.3
Dinv43873 Davidia involucrata HOM05D002932 ORTHO05D003208 8.4e-29 131.3 237 38.8
Duzib133G1077 Durio zibethinus HOM05D002932 ORTHO05D003208 5.5e-28 128.6 214 39.3
Haze_15577 Corylus avellana HOM05D002932 ORTHO05D003208 1.4e-23 114.0 207 35.7
Haze_15582 Corylus avellana HOM05D002932 ORTHO05D003208 1.4e-23 114.0 207 35.7
Potri.014G091500 Populus trichocarpa HOM05D002932 ORTHO05D003208 3.1e-23 112.8 214 33.6
Manes.05G028200 Manihot esculenta HOM05D002932 ORTHO05D003208 5.3e-23 112.1 215 35.3
Dinv32532 Davidia involucrata HOM05D002932 ORTHO05D003208 9.0e-23 111.3 257 33.9
Gorai.004G154500 Gossypium raimondii HOM05D002932 ORTHO05D003208 1.0e-21 107.8 206 36.4
Gohir.A08G127400 Gossypium hirsutum HOM05D002932 ORTHO05D003208 1.3e-21 107.5 206 36.4
Ciclev10023540m.g Citrus clementina HOM05D002932 ORTHO05D003208 1.7e-21 107.1 206 34.0
Gohir.D08G148800 Gossypium hirsutum HOM05D002932 ORTHO05D003208 1.7e-21 107.1 205 36.6
PGR031G1724 Punica granatum HOM05D002932 ORTHO05D003208 6.5e-21 105.1 201 33.3
Lalb_Chr04g0256131 Lupinus albus HOM05D002932 ORTHO05D003208 8.5e-21 104.8 203 37.9
Thecc.01G350800 Theobroma cacao HOM05D002932 ORTHO05D003208 2.5e-20 103.2 138 42.0
Dinv28362 Davidia involucrata HOM05D002932 ORTHO05D003208 4.2e-20 102.4 219 32.0
Phvul.007G077100 Phaseolus vulgaris HOM05D002932 ORTHO05D003208 4.2e-20 102.4 225 32.4
VMungo0720G0620 Vigna mungo HOM05D002932 ORTHO05D003208 1.2e-19 100.9 220 32.3
COL.COLO4_06371 Corchorus olitorius HOM05D002932 ORTHO05D003208 6.1e-19 98.6 176 38.1
Dinv35290 Davidia involucrata HOM05D002932 ORTHO05D003208 7.9e-19 98.2 219 31.1
VMungo0251G1401 Vigna mungo HOM05D002932 ORTHO05D003208 7.9e-19 98.2 202 34.7
Glyma.20G164000 Glycine max HOM05D002932 ORTHO05D003208 1.4e-18 97.4 225 33.3
SalBow3G2518 Salvia bowleyana HOM05D002932 ORTHO05D003208 1.4e-18 97.4 228 32.5
Glyma.10G229200 Glycine max HOM05D002932 ORTHO05D003208 3.0e-18 96.3 227 33.5
TAR636G0499 Trochodendron aralioides HOM05D002932 ORTHO05D003208 3.9e-18 95.9 221 31.7
CSS0013096 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 8.8e-18 94.7 238 34.0
TAR374G1073 Trochodendron aralioides HOM05D002932 ORTHO05D003208 1.5e-17 94.0 214 31.8
CSS0002659 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 2.0e-17 93.6 238 33.6
GSVIVG01028788001 Vitis vinifera HOM05D003816 ORTHO05D004410 2.5e-17 93.2 222 29.3
Sabra14G0066400 Salix brachista HOM05D002932 ORTHO05D003208 3.3e-17 92.8 212 29.7
Hma1.2p1_0142F.1_g064300 Hydrangea macrophylla HOM05D002932 ORTHO05D003208 9.7e-17 91.3 231 32.0
Lj2g0019721 Lotus japonicus HOM05D002932 ORTHO05D003208 9.7e-17 91.3 205 35.6
Nn1g01736 Nelumbo nucifera HOM05D002932 ORTHO05D003208 1.3e-16 90.9 231 31.6
Glyma.08G299600 Glycine max HOM05D002932 ORTHO05D003208 1.7e-16 90.5 213 34.7
Manes.06G154700 Manihot esculenta HOM05D002932 ORTHO05D003208 1.7e-16 90.5 222 32.4
Nn7g37319 Nelumbo nucifera HOM05D002932 ORTHO05D003208 2.2e-16 90.1 219 32.4
SGA_v2.0_scaffold11G05690 Striga asiatica HOM05D002932 ORTHO05D003208 2.2e-16 90.1 236 31.4
Actinidia03151 Actinidia chinensis HOM05D002932 ORTHO05D003208 2.8e-16 89.7 217 29.5
Glyma.09G126400 Glycine max HOM05D002932 ORTHO05D003208 2.8e-16 89.7 219 32.0
Hma1.2p1_0783F.1_g216930 Hydrangea macrophylla HOM05D002932 ORTHO05D003208 2.8e-16 89.7 167 37.1
ClCG05G008540 Citrullus lanatus HOM05D002932 ORTHO05D003208 4.8e-16 89.0 222 29.3
Glyma.18G121000 Glycine max HOM05D002932 ORTHO05D003208 4.8e-16 89.0 215 32.1
Sed0008251 Sechium edule HOM05D002932 ORTHO05D003208 4.8e-16 89.0 223 28.3
VMungo0464G0277 Vigna mungo HOM05D002932 ORTHO05D003208 4.8e-16 89.0 219 32.9
CSS0021611 Camellia sinensis var. sinensis HOM05D002932 ORTHO05D003208 6.3e-16 88.6 218 32.6
Phvul.004G102700 Phaseolus vulgaris HOM05D002932 ORTHO05D003208 6.3e-16 88.6 219 32.4
COL.COLO4_30256 Corchorus olitorius HOM05D002932 ORTHO05D003208 8.2e-16 88.2 219 31.5
MELO3C006960.2 Cucumis melo HOM05D002932 ORTHO05D003208 8.2e-16 88.2 223 29.6
Glyma.16G173400 Glycine max HOM05D002932 ORTHO05D003208 8.2e-16 88.2 220 32.3
Manes.14G020200 Manihot esculenta HOM05D002932 ORTHO05D003208 8.2e-16 88.2 219 32.4
TAR629G3108 Trochodendron aralioides HOM05D002932 ORTHO05D003208 8.2e-16 88.2 215 29.3
Duzib068G0647 Durio zibethinus HOM05D002932 ORTHO05D003208 1.1e-15 87.8 218 31.2
Ah.13g069610 Amaranthus hybridus HOM05D002932 ORTHO05D003208 1.4e-15 87.4 223 30.5
TPR.G7742 Trifolium pratense HOM05D002932 ORTHO05D003208 1.4e-15 87.4 223 32.3
CiPaw.02G036300 Carya illinoinensis HOM05D002932 ORTHO05D003208 1.8e-15 87.0 235 31.1
MSTRG.4831 Avicennia marina HOM05D002932 ORTHO05D003208 3.1e-15 86.3 242 29.3
Sabra12G0024300 Salix brachista HOM05D002932 ORTHO05D003208 3.1e-15 86.3 224 33.0
Lj2g0001659 Lotus japonicus HOM05D002932 ORTHO05D003208 4.1e-15 85.9 226 28.8
TPR.G36623 Trifolium pratense HOM05D002932 ORTHO05D003208 4.1e-15 85.9 225 32.4
CsaV3_3G021720 Cucumis sativus L. HOM05D002932 ORTHO05D003208 5.3e-15 85.5 223 28.7
Sed0015119 Sechium edule HOM05D002932 ORTHO05D003208 5.3e-15 85.5 222 27.9
Phvul.003G048900 Phaseolus vulgaris HOM05D002932 ORTHO05D003208 6.9e-15 85.1 205 31.2
vmacro06597 Vaccinium macrocarpon HOM05D002932 ORTHO05D003208 6.9e-15 85.1 228 28.5
Rhsim03G0196300 Rhododendron simsii HOM05D002932 ORTHO05D003208 9.1e-15 84.7 225 29.8
Actinidia08604 Actinidia chinensis HOM05D002932 ORTHO05D003208 1.2e-14 84.3 229 30.6
Potri.012G035200 Populus trichocarpa HOM05D002932 ORTHO05D003208 1.2e-14 84.3 221 33.5
Duzib205G0983 Durio zibethinus HOM05D002932 ORTHO05D003208 1.5e-14 84.0 225 31.6
CiPaw.06G005800 Carya illinoinensis HOM05D002932 ORTHO05D003208 2.0e-14 83.6 229 32.8
Eucgr.E00092 Eucalyptus grandis HOM05D002932 ORTHO05D003208 2.0e-14 83.6 200 34.5
arahy.Tifrunner.gnm1.ann1.M5AIDB Arachis hypogaea HOM05D002932 ORTHO05D003208 2.6e-14 83.2 238 29.4
Lj5g0016966 Lotus japonicus HOM05D002932 ORTHO05D003208 2.6e-14 83.2 221 29.4
Duzib084G0326 Durio zibethinus HOM05D002932 ORTHO05D003208 3.4e-14 82.8 224 30.4
Ah.07g206300 Amaranthus hybridus HOM05D002932 ORTHO05D003208 4.5e-14 82.4 222 31.1
arahy.Tifrunner.gnm1.ann1.N7QM32 Arachis hypogaea HOM05D002932 ORTHO05D003208 4.5e-14 82.4 237 29.5
Cfa016327 Carpinus fangiana HOM05D002932 ORTHO05D003208 4.5e-14 82.4 237 30.0
Gohir.D12G255000 Gossypium hirsutum HOM05D002932 ORTHO05D003208 4.5e-14 82.4 233 30.5
Gorai.008G272600 Gossypium raimondii HOM05D002932 ORTHO05D003208 4.5e-14 82.4 233 30.5
Psat0s694g0080 Pisum sativum HOM05D002932 ORTHO05D003208 4.5e-14 82.4 229 29.3
Peaxi162Scf00020g00174 Petunia axillaris HOM05D002932 ORTHO05D003208 7.7e-14 81.6 267 29.2
Sabra15G0019600 Salix brachista HOM05D002932 ORTHO05D003208 7.7e-14 81.6 222 32.4
Actinidia20171 Actinidia chinensis HOM05D002932 ORTHO05D003208 1.0e-13 81.3 253 30.8
Haze_00079 Corylus avellana HOM05D002932 ORTHO05D003208 1.7e-13 80.5 238 29.4
Gohir.A12G254433 Gossypium hirsutum HOM05D002932 ORTHO05D003208 1.7e-13 80.5 228 29.8
TWI23G0695 Tripterygium wilfordii HOM05D002932 ORTHO05D003208 1.7e-13 80.5 226 28.8
EL10Ac3g05377 Beta vulgaris HOM05D002932 ORTHO05D003208 2.2e-13 80.1 219 31.1
PGSC0003DMG400019420 Solanum tuberosum HOM05D002932 ORTHO05D003208 2.9e-13 79.7 202 33.7
Medtr1g099440 Medicago truncatula HOM05D002932 ORTHO05D003208 5.0e-13 79.0 220 31.4
Thecc.03G188500 Theobroma cacao HOM05D002932 ORTHO05D003208 5.0e-13 79.0 230 29.6
arahy.Tifrunner.gnm1.ann1.M9LJWH Arachis hypogaea HOM05D002932 ORTHO05D003208 6.5e-13 78.6 234 33.3
Lalb_Chr01g0009541 Lupinus albus HOM05D002932 ORTHO05D003208 6.5e-13 78.6 220 30.9
MD01G1211600 Malus domestica HOM05D002932 ORTHO05D003208 6.5e-13 78.6 248 31.0
Potri.015G026600 Populus trichocarpa HOM05D002932 ORTHO05D003208 6.5e-13 78.6 221 31.7
MSTRG.17303 Avicennia marina HOM05D002932 ORTHO05D003208 1.1e-12 77.8 243 29.2
QL09p012032 Quercus lobata HOM05D002932 ORTHO05D003208 1.1e-12 77.8 226 30.1
arahy.Tifrunner.gnm1.ann1.71GWZM Arachis hypogaea HOM05D002932 ORTHO05D003208 1.4e-12 77.4 226 35.0
MSTRG.20870 Avicennia marina HOM05D002932 ORTHO05D003208 1.4e-12 77.4 243 28.4
Sabra15G0022400 Salix brachista HOM05D002932 ORTHO05D003208 1.4e-12 77.4 222 31.5
Sopen10g005630 Solanum pennellii HOM05D002932 ORTHO05D003208 1.4e-12 77.4 201 34.8
Glyma.02G106200 Glycine max HOM05D002932 ORTHO05D003208 1.9e-12 77.0 215 35.3
Glyma.01G045900 Glycine max HOM05D002932 ORTHO05D003208 2.5e-12 76.6 206 35.4
Prupe.2G304400 Prunus persica HOM05D002932 ORTHO05D003208 2.5e-12 76.6 250 29.6
Eucgr.K00306 Eucalyptus grandis HOM05D002932 ORTHO05D003208 3.2e-12 76.3 228 29.4
Medtr6g034060 Medicago truncatula HOM05D002932 ORTHO05D003208 4.2e-12 75.9 235 28.1
AUR62021078 Chenopodium quinoa HOM05D002932 ORTHO05D003208 5.5e-12 75.5 224 29.5
Cc02_g38700 Coffea canephora HOM05D002932 ORTHO05D003208 5.5e-12 75.5 257 25.7
Psat1g099320 Pisum sativum HOM05D002932 ORTHO05D003208 7.2e-12 75.1 230 31.3
Psat1g106560 Pisum sativum HOM05D002932 ORTHO05D003208 7.2e-12 75.1 237 31.2
Cpa.g.sc3.12 Carica papaya HOM05D002932 ORTHO05D003208 1.2e-11 74.3 219 32.9
TPR.G37115 Trifolium pratense HOM05D002932 ORTHO05D003208 1.2e-11 74.3 220 33.2
Rhsim09G0202600 Rhododendron simsii HOM05D002932 ORTHO05D003208 2.1e-11 73.6 218 30.3
AUR62031454 Chenopodium quinoa HOM05D002932 ORTHO05D003208 2.7e-11 73.2 221 30.3
PGSC0003DMG402000198 Solanum tuberosum HOM05D002932 ORTHO05D003208 2.7e-11 73.2 271 27.7
TPR.G36701 Trifolium pratense HOM05D002932 ORTHO05D003208 2.7e-11 73.2 236 30.1
DCAR_006952 Daucus carota HOM05D002932 ORTHO05D003208 3.6e-11 72.8 224 31.7
Nitab4.5_0000305g0360 Nicotiana tabacum HOM05D002932 ORTHO05D003208 3.6e-11 72.8 262 28.2
Lalb_Chr02g0141341 Lupinus albus HOM05D002932 ORTHO05D003208 6.1e-11 72.0 212 29.7
FAN03G0587 Fragaria x ananassa HOM05D002932 ORTHO05D003208 7.9e-11 71.6 236 29.2
Nitab4.5_0009475g0010 Nicotiana tabacum HOM05D002932 ORTHO05D003208 1.0e-10 71.2 258 27.9
TWI14G1190 Tripterygium wilfordii HOM05D002932 ORTHO05D003208 1.0e-10 71.2 223 27.4
FvH4_7g30650 Fragaria vesca HOM05D002932 ORTHO05D003208 1.4e-10 70.9 240 30.4
FAN06G0995 Fragaria x ananassa HOM05D002932 ORTHO05D003208 1.4e-10 70.9 240 30.4
CANSAT21G2430 Cannabis sativa HOM05D002932 ORTHO05D003208 1.8e-10 70.5 241 27.8
Medtr5g039840 Medicago truncatula HOM05D002932 ORTHO05D003208 1.8e-10 70.5 218 30.7
Psat1g099240 Pisum sativum HOM05D002932 ORTHO05D003208 1.8e-10 70.5 235 29.4
Psat1g099360 Pisum sativum HOM05D002932 ORTHO05D003208 1.8e-10 70.5 237 30.8
THA.LOC104811937 Tarenaya hassleriana HOM05D002932 ORTHO05D003208 1.8e-10 70.5 217 27.6
Lalb_Chr03g0035141 Lupinus albus HOM05D002932 ORTHO05D003208 2.3e-10 70.1 222 27.5
MD07G1282200 Malus domestica HOM05D002932 ORTHO05D003208 2.3e-10 70.1 250 29.2
RcHm_v2.0_Chr1g0379591 Rosa chinensis HOM05D002932 ORTHO05D003208 2.3e-10 70.1 239 31.8
Actinidia31853 Actinidia chinensis HOM05D002932 ORTHO05D003208 3.0e-10 69.7 152 32.2
FAN10G0880 Fragaria x ananassa HOM05D002932 ORTHO05D003208 3.9e-10 69.3 240 30.0
FAN10G1573 Fragaria x ananassa HOM05D002932 ORTHO05D003208 3.9e-10 69.3 240 30.0
Lalb_Chr21g0305311 Lupinus albus HOM05D002932 ORTHO05D003208 3.9e-10 69.3 224 27.7
Oeu054360.1 Olea europaea HOM05D002932 ORTHO05D003208 5.1e-10 68.9 255 25.9
Medtr6g034055 Medicago truncatula HOM05D002932 ORTHO05D003208 6.7e-10 68.6 224 29.5
Solyc03g007775.2 Solanum lycopersicum HOM05D002932 ORTHO05D003208 6.7e-10 68.6 227 28.2
PGR042G1004 Punica granatum HOM05D002932 ORTHO05D003208 8.8e-10 68.2 222 27.9
Medtr7g039720 Medicago truncatula HOM05D002932 ORTHO05D003208 1.5e-09 67.4 213 29.1
Oeu063673.2 Olea europaea HOM05D002932 ORTHO05D003208 2.0e-09 67.0 238 24.8
THA.LOC104825123 Tarenaya hassleriana HOM05D002932 ORTHO05D003208 2.0e-09 67.0 218 28.9
Atru.chr1.321 Acer truncatum HOM05D002932 ORTHO05D003208 3.3e-09 66.2 243 28.0
Sopen03g003700 Solanum pennellii HOM05D002932 ORTHO05D003208 3.3e-09 66.2 221 28.1
Eucgr.A02685 Eucalyptus grandis HOM05D002932 ORTHO05D003208 7.4e-09 65.1 230 29.1
Ciclev10005884m.g Citrus clementina HOM05D002932 ORTHO05D003208 9.7e-09 64.7 203 28.6
Medtr6g034050 Medicago truncatula HOM05D002932 ORTHO05D003208 2.2e-08 63.5 222 26.6
C09p42630 Brassica napus HOM05D002932 ORTHO05D003208 2.8e-08 63.2 223 30.5
BolC9t57139H Brassica oleracea HOM05D002932 ORTHO05D003208 2.8e-08 63.2 223 30.5
C03p18060 Brassica napus HOM05D002932 ORTHO05D003208 3.7e-08 62.8 219 27.4
BolC3t14211H Brassica oleracea HOM05D002932 ORTHO05D003208 3.7e-08 62.8 219 27.4
HanXRQChr13g0392281 Helianthus annuus HOM05D002932 ORTHO05D003208 3.7e-08 62.8 233 28.3
Peaxi162Scf00618g00627 Petunia axillaris HOM05D002932 ORTHO05D003208 3.7e-08 62.8 194 25.3
CAN.G926.8 Capsicum annuum HOM05D002932 ORTHO05D003208 8.2e-08 61.6 215 30.7
Sopen01g039030 Solanum pennellii HOM05D002932 ORTHO05D003208 8.2e-08 61.6 259 27.4
A03p15470 Brassica napus HOM05D002932 ORTHO05D003208 1.1e-07 61.2 222 28.8
BraA03t10842Z Brassica rapa HOM05D002932 ORTHO05D003208 1.1e-07 61.2 222 28.8
A10p10380 Brassica napus HOM05D002932 ORTHO05D003208 1.4e-07 60.8 219 28.8
BraA10t43121Z Brassica rapa HOM05D002932 ORTHO05D003208 1.4e-07 60.8 219 28.8
CAN.G78.138 Capsicum annuum HOM05D002932 ORTHO05D003208 1.4e-07 60.8 181 28.7
Gohir.D11G013600 Gossypium hirsutum HOM05D002932 ORTHO05D003208 1.4e-07 60.8 231 26.4
BcaC01g06213 Brassica carinata HOM05D002932 ORTHO05D003208 1.8e-07 60.5 217 27.2
CAN.G694.15 Capsicum annuum HOM05D001716 ORTHO05D003208 1.8e-07 60.5 209 28.7
Lsat_1_v5_gn_4_34860 Lactuca sativa HOM05D002932 ORTHO05D003208 1.8e-07 60.5 237 25.7
AT5G52900 Arabidopsis thaliana HOM05D002932 ORTHO05D003208 2.4e-07 60.1 234 28.6
arahy.Tifrunner.gnm1.ann1.7X5UPK Arachis hypogaea HOM05D046058 ORTHO05D003208 2.4e-07 60.1 213 31.5
Migut.B01809 Erythranthe guttata HOM05D002932 ORTHO05D003208 2.4e-07 60.1 183 27.9
TWI59G0718 Tripterygium wilfordii HOM05D002932 ORTHO05D003208 2.4e-07 60.1 207 30.0
Aa31LG3G9150 Aethionema arabicum HOM05D002932 ORTHO05D003208 3.1e-07 59.7 218 29.4
Oeu037130.1 Olea europaea HOM05D002932 ORTHO05D003208 3.1e-07 59.7 228 24.1
Solyc01g095240.3 Solanum lycopersicum HOM05D002932 ORTHO05D003208 4.1e-07 59.3 261 26.1
CAN.G959.5 Capsicum annuum HOM05D000001 ORTHO05D014548 5.3e-07 58.9 207 29.0
Thhalv10014576m.g Eutrema salsugineum HOM05D002932 ORTHO05D003208 7.0e-07 58.5 217 27.6
Sed0018025 Sechium edule HOM05D002932 ORTHO05D003208 7.0e-07 58.5 214 28.5
ClCG01G000790 Citrullus lanatus HOM05D002932 ORTHO05D003208 1.2e-06 57.8 217 26.7
ECA238G1001 Erigeron canadensis HOM05D002932 ORTHO05D003208 1.2e-06 57.8 220 29.1
HanXRQChr07g0207101 Helianthus annuus HOM05D002932 ORTHO05D003208 1.2e-06 57.8 216 26.4
HanXRQChr16g0523761 Helianthus annuus HOM05D002932 ORTHO05D003208 1.2e-06 57.8 208 28.4
arahy.Tifrunner.gnm1.ann1.R0FZSZ Arachis hypogaea HOM05D046058 ORTHO05D003208 2.6e-06 56.6 214 28.0
BcaC03g14485 Brassica carinata HOM05D002932 ORTHO05D003208 3.5e-06 56.2 217 27.2
BolC2t08047H Brassica oleracea HOM05D002932 ORTHO05D003208 4.5e-06 55.8 219 27.4
PGSC0003DMG400019964 Solanum tuberosum HOM05D002932 ORTHO05D003208 4.5e-06 55.8 221 26.7
C02p19170 Brassica napus HOM05D002932 ORTHO05D003208 5.9e-06 55.5 219 27.4
Sp6g15070 Schrenkiella parvula HOM05D002932 ORTHO05D003208 7.7e-06 55.1 225 28.4


User provided reference genes

Program Settings